BQ623167

Overview
NameBQ623167
Unique NameBQ623167
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623167 vs. ExPASy Swiss-Prot
Match: DCNL3_HUMAN (DCN1-like protein 3 OS=Homo sapiens GN=DCUN1D3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.166e-13
Identity = 33/72 (45.83%), Postives = 51/72 (70.83%), Query Frame = 2
Query:  194 RHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLD 409
            + LEEL+ RYKD   D IL +G+   CNDL VDP +  +L+++W  +AATMC+F+++EF  G +++  DS+D
Sbjct:   89 QRLEELFRRYKDEREDAILEEGMERFCNDLCVDPTEFRVLLLAWKFQAATMCKFTRKEFFDGCKAISADSID 160          
BLAST of BQ623167 vs. ExPASy Swiss-Prot
Match: DCNL3_BOVIN (DCN1-like protein 3 OS=Bos taurus GN=DCUN1D3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.166e-13
Identity = 33/72 (45.83%), Postives = 51/72 (70.83%), Query Frame = 2
Query:  194 RHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLD 409
            + LEEL+ RYKD   D IL +G+   CNDL VDP +  +L+++W  +AATMC+F+++EF  G +++  DS+D
Sbjct:   89 QRLEELFRRYKDEREDAILEEGMERFCNDLCVDPTEFRVLLLAWKFQAATMCKFTRKEFFDGCKAISADSID 160          
BLAST of BQ623167 vs. ExPASy Swiss-Prot
Match: DCNL3_XENLA (DCN1-like protein 3 OS=Xenopus laevis GN=dcun1d3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.989e-13
Identity = 45/131 (34.35%), Postives = 73/131 (55.73%), Query Frame = 2
Query:   41 RSNRDKLQQFVSITG-ASEKAALQALKASDWHLEGAFDVFYSQPQSKS-------LTDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLD 409
            RS+  K ++ +SI G AS +  +   K  D  LE +  +       K        L+  + +EEL+ RYKD   D IL +G+   C+DL VDP +  +LV++W  +AATMC+F+++EF  G +S+  D ++
Sbjct:   30 RSSSHK-EEHMSICGKASGEILVNGTKKGDASLEASQPLAVGVDTKKKEQGVGAELSSLQRIEELFRRYKDEREDAILEEGMERFCDDLCVDPTEFRVLVLAWKFQAATMCKFTRREFFEGCKSINADGIE 159          
BLAST of BQ623167 vs. ExPASy Swiss-Prot
Match: DCN1_CAEEL (Defective in cullin neddylation protein 1 OS=Caenorhabditis elegans GN=dcn-1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.989e-13
Identity = 54/181 (29.83%), Postives = 88/181 (48.62%), Query Frame = 2
Query:   50 RDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQ------SKSLTDTRHLEELYNRYKDPYLDM----ILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERI-SFHAG*AER*TKNSVRYTTLHLPGQKKRVRNLWALDTAIGMWQL 559
            + KL+QFV  T  +E  +L  L  ++W++E A  +++  P        +   D  ++E L+N+Y DP   +    +   GI  L  DL  +  D  +LV++W   A T CEFS  E++ G+ +L  D++   R+RI S ++G      K    Y       +    RNL  L+TAI  W +
Sbjct:    9 KTKLRQFVQWTQVTEAVSLNFLAKANWNIEYAMTLYFDNPNLFAGSTPQPSVDRSNIERLFNQYVDPKDKVGEKRMGPHGINRLLTDLGYEATDRRVLVLAWKFTAQTQCEFSLDEWVKGMTALQADTVQNLRQRIDSINSGLESDKAKFHELYLFAFNYAKSAACRNL-DLETAICCWDV 188          
BLAST of BQ623167 vs. ExPASy Swiss-Prot
Match: DCN1_CAEBR (Defective in cullin neddylation protein 1 OS=Caenorhabditis briggsae GN=dcn-1 PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 7.558e-13
Identity = 43/131 (32.82%), Postives = 71/131 (54.20%), Query Frame = 2
Query:   59 LQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQ-----SKSLTDTRHLEELYNRY---KDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERI 427
            L+QFV  T A+E  +L  L  ++W++E A  ++Y  P      + +  D     +L+ +Y   +D   + I   G+  L  DL  +P D  +L+++W  KA T CEFS QEF  G+ SL +DS+   +++I
Sbjct:   87 LRQFVQWTQATEPVSLNFLAKANWNIEYAMTLYYDNPNLFSSSAPATVDQSKTIQLFTQYVDKRDGLGERIGPHGMQRLLIDLGYEPIDRRVLILAWVFKAETQCEFSLQEFTNGMASLQVDSIQGLKQKI 217          
BLAST of BQ623167 vs. ExPASy Swiss-Prot
Match: DCN1_USTMA (Defective in cullin neddylation protein 1 OS=Ustilago maydis GN=DCN1 PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 8.830e-12
Identity = 42/153 (27.45%), Postives = 79/153 (51.63%), Query Frame = 2
Query:   59 LQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQ-------SKSLTDTR-------HLEELYNRYKDPYLD---------------MILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGI-DSLDKFRERI 427
            L+QF  +T A+ + A + LKA  + +E A D F++  Q       S S  D +        L  L++R++D   D               +I + G   +C  L+V P+D+V L +S+++K+A+M  F+++ +I G + L + D++DK ++ +
Sbjct:   11 LRQFRQLTNATPQDANRILKAHGYRIEPATDAFFNNEQAQINASISSSTLDRKSEREVKERLNALFDRFRDAGADSDEEDDEASQPEDRDLISIGGALKMCEALEVSPEDVVFLPLSYYLKSASMGTFTREGYINGWKMLDLSDTIDKQKKTL 163          

HSP 2 Score: 26.9498 bits (58), Expect = 8.830e-12
Identity = 8/22 (36.36%), Postives = 17/22 (77.27%), Query Frame = 1
Query:  466 FREIYNFAFAWAKEKGQKSLGI 531
            + ++Y + +A+A+ +GQKSL +
Sbjct:  199 YEKVYEYTYAFARREGQKSLAL 220          
BLAST of BQ623167 vs. ExPASy Swiss-Prot
Match: DCN1L_DICDI (DCN1-like protein 1 OS=Dictyostelium discoideum GN=DDB_G0290025 PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 2.531e-11
Identity = 36/125 (28.80%), Postives = 67/125 (53.60%), Query Frame = 2
Query:   56 KLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQS-KSLTDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERI 427
            K  +F+SIT A+E  A+Q LK + W  + A D FYS P +  +  D + +E ++N+YKD   + I  + +     D+ ++  +++ L V W  K   M   +K EF+  ++ L  D++    +++
Sbjct:   11 KCTEFMSITEATEAKAIQYLKDASWRTDAAVDNFYSNPSNFANKFDKKAIETIFNKYKDSGEEQI-SEKLPEFVKDININ-DEMMELAVLWKFKTKQMGVITKNEFMETMERLRCDNISSLEKQM 133          

HSP 2 Score: 25.7942 bits (55), Expect = 2.531e-11
Identity = 10/28 (35.71%), Postives = 15/28 (53.57%), Query Frame = 1
Query:  457 NKKFREIYNFAFAWAKEKGQKSLGIGHC 540
            N  F+E Y F F   K + QK++ +  C
Sbjct:  148 NSAFKEFYMFVFDLGKAENQKNVSLQMC 175          
The following BLAST results are available for this feature:
BLAST of BQ623167 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
DCNL3_HUMAN1.166e-1345.83DCN1-like protein 3 OS=Homo sapiens GN=DCUN1D3 PE=... [more]
DCNL3_BOVIN1.166e-1345.83DCN1-like protein 3 OS=Bos taurus GN=DCUN1D3 PE=2 ... [more]
DCNL3_XENLA1.989e-1334.35DCN1-like protein 3 OS=Xenopus laevis GN=dcun1d3 P... [more]
DCN1_CAEEL1.989e-1329.83Defective in cullin neddylation protein 1 OS=Caeno... [more]
DCN1_CAEBR7.558e-1332.82Defective in cullin neddylation protein 1 OS=Caeno... [more]
DCN1_USTMA8.830e-1227.45Defective in cullin neddylation protein 1 OS=Ustil... [more]
DCN1L_DICDI2.531e-1128.80DCN1-like protein 1 OS=Dictyostelium discoideum GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00258 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00258 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623167 ID=BQ623167; Name=BQ623167; organism=Citrus sinensis; type=EST; length=560bp
ATATCAAATTCACAAGCTCCCGAGATGCATAAGCGTGAGTAGAAGTAACC
GGGACAAACTCCAACAATTTGTCTCGATAACTGGGGCAAGCGAAAAAGCT
GCTCTTCAGGCTTTGAAGGCTAGTGACTGGCATCTTGAAGGAGCATTTGA
TGTATTCTATAGCCAACCTCAATCAAAATCACTAACTGATACCAGACATT
TGGAGGAGCTTTATAACAGATATAAAGATCCATATCTTGATATGATTCTG
GTTGACGGTATCACTCTCCTGTGCAATGACCTTCAGGTGGATCCTCAAGA
TATAGTTATGTTAGTTGTTTCATGGCACATGAAAGCTGCTACAATGTGTG
AATTCTCAAAGCAGGAGTTCATAGGTGGATTGCAATCACTAGGGATAGAT
TCTCTGGATAAGTTCCGTGAAAGGATATCATTTCATGCGGGCTGAGCTGA
AAGATGAACAAAAAATTCCGTGAGATATACAACTTTGCATTTGCCTGGGC
AAAAGAAAAGGGTCAGAAATCTCTGGGCATTGGACACTGCAATCGGAATG
TGGCAATTAT
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