BQ623171

Overview
NameBQ623171
Unique NameBQ623171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9730 contig Csv1_Contig9730:425..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623171 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 6.066e-15
Identity = 48/145 (33.10%), Postives = 74/145 (51.03%), Query Frame = 2
Query:    2 VTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAADIYNNDKAWDDHWILWEG 436
            VTF   +  ++SL+RA  Y+ AQ LGA+ G  ++ +             NT+ +G + G A   EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARSF  A +  N   + +HW+ W G
Sbjct:   69 VTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRG-NLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA----LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRN---FSNHWVYWVG 205          
BLAST of BQ623171 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 6.066e-15
Identity = 48/145 (33.10%), Postives = 74/145 (51.03%), Query Frame = 2
Query:    2 VTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAADIYNNDKAWDDHWILWEG 436
            VTF   +  ++SL+RA  Y+ AQ LGA+ G  ++ +             NT+ +G + G A   EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARSF  A +  N   + +HW+ W G
Sbjct:   71 VTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRG-NLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA----LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRN---FSNHWVYWVG 207          
BLAST of BQ623171 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.066e-15
Identity = 49/145 (33.79%), Postives = 73/145 (50.34%), Query Frame = 2
Query:    2 VTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAADIYNNDKAWDDHWILWEG 436
            VTF   +  ++SL+RA  YM AQ LGA+ G  ++ +             NT+  G + G A   EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARSF  A +  N   + +HW+ W G
Sbjct:   71 VTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRG-NLALNTLHPGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRN---FTNHWVYWVG 207          
BLAST of BQ623171 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 7.922e-15
Identity = 53/146 (36.30%), Postives = 78/146 (53.42%), Query Frame = 2
Query:    2 VTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAADIYNNDKAWDDHWILWEG 436
            VT GL +   ++++    Y +AQ LG+     L    +K+  N L    + VA+G N    +  EII TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARSFG A +  +   +  +WI W G
Sbjct:   86 VTLGLAVGGNITILTGFFYWIAQLLGSTVACLL----LKYVTNGLAVPTHGVAAGLNGFQGVVMEIIITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGD---FSQNWIYWAG 220          
BLAST of BQ623171 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.035e-14
Identity = 53/146 (36.30%), Postives = 78/146 (53.42%), Query Frame = 2
Query:    2 VTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAADIYNNDKAWDDHWILWEG 436
            VT GL +   ++++    Y +AQ LG+     L    +K+  N L    + VA+G N    +  EII TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARSFG A +  +   +  +WI W G
Sbjct:   86 VTLGLAVGGNITILTGFFYWIAQLLGSTVACLL----LKYVTNGLAVPTHGVAAGLNGLQGVVMEIIITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGD---FSQNWIYWAG 220          
BLAST of BQ623171 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.351e-14
Identity = 53/146 (36.30%), Postives = 73/146 (50.00%), Query Frame = 2
Query:    2 VTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSAT-DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAADIYNNDKAWDDHWILWEG 436
            +TFG  L  ++SLIRA+ Y +AQ LGA+    L++         +      +ASG     A+  E   TF L+Y  ++   DPKR     HV  +APL +GF +    LA  P  G G+NPAR FG A +      W  HW+ W G
Sbjct:   93 ITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLRLTT----GGMRPPGFALASGVGDWHAVLLEATMTFGLMYAYYATVIDPKRG----HVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPALV---GWRWRHHWVYWLG 227          
BLAST of BQ623171 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.765e-14
Identity = 52/146 (35.62%), Postives = 74/146 (50.68%), Query Frame = 2
Query:    2 VTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSA-TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAADIYNNDKAWDDHWILWEG 436
            VT GL L   +S+ RA  Y + Q L +     L    + +    +G   +T+ASG +    +  EII TF L++TV++   DPK+ + D   P+L     GF V    LA    +G  +NPARSFG A +  N   W DHW+ W G
Sbjct:   82 VTLGLLLGGHISVFRAFLYWIDQLLASSAACFL----LSYLTGGMGTPVHTLASGVSYTQGIIWEIILTFSLLFTVYATIVDPKKGSLDGFGPLLT----GFVVGANILAGGAFSGASMNPARSFGPALVSGN---WTDHWVYWVG 216          
BLAST of BQ623171 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.765e-14
Identity = 53/150 (35.33%), Postives = 78/150 (52.00%), Query Frame = 2
Query:    2 VTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKG----SALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAADIYNNDKAWDDHWILWEG 436
            VTFG+ L   ++L+R + Y +AQ LG++    L+        +   GG    A G + G    +AL  EI+ TF LVYTV+ +A DPK  +    +  +AP+ IGF V    LA    +G  +NPA +FG A +      W +HW+ W G
Sbjct:   89 VTFGVLLGGNITLLRGILYWIAQLLGSVAACFLL--------SFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGS----LGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVV---SWTWTNHWVYWAG 223          
BLAST of BQ623171 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.765e-14
Identity = 50/146 (34.25%), Postives = 77/146 (52.74%), Query Frame = 2
Query:    2 VTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAADIYNNDKAWDDHWILWEG 436
            VTFG F+   ++L+R + Y +AQ LG++    +    +K     L   A  +++G    +A   EI+ TF LVYTV+ +A DPK  +    +  +AP+ IGF V    LA    +G  +NPA +FG A +      W +HW+ W G
Sbjct:   88 VTFGAFIGGNITLLRGILYWIAQLLGSV----VACLILKFATGGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDPKNGS----LGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVV---SWTWTNHWVYWAG 222          
BLAST of BQ623171 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.010e-14
Identity = 52/146 (35.62%), Postives = 75/146 (51.37%), Query Frame = 2
Query:    2 VTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAADIYNNDKAWDDHWILWEG 436
            V+FG  +  ++S+IRAV Y +AQ LG+I    +++       N++      V+ G   G     E++ TF L+YTV+ +A DPKR A    V  +APL IG  V    L   P  G  +NPA +FG + +      W  HWI W G
Sbjct:   88 VSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVT----NNMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGA----VSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLV---GWQWHQHWIFWVG 222          
The following BLAST results are available for this feature:
BLAST of BQ623171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
MIP_RAT6.066e-1533.10Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_MOUSE6.066e-1533.10Lens fiber major intrinsic protein OS=Mus musculus... [more]
MIP_CANFA6.066e-1533.79Lens fiber major intrinsic protein OS=Canis famili... [more]
TIP2_TOBAC7.922e-1536.30Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP1_TOBAC1.035e-1436.30Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIP31_ORYSJ1.351e-1436.30Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP41_ARATH1.765e-1435.62Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
TIP12_ARATH1.765e-1435.33Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
TIP11_ARATH1.765e-1434.25Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIPA_PHAVU3.010e-1435.62Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00262 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00262 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623171 ID=BQ623171; Name=BQ623171; organism=Citrus sinensis; type=EST; length=450bp
TGTGACGTTTGGGCTGTTCTTGGCAAGGAAGGTATCATTGATCAGGGCTG
TGGCTTACATGGTGGCTCAGTGCTTGGGTGCCATTTGCGGTGTTGGTTTG
GTCAAGGCCTTCATGAAGCATGAGTACAACTCACTTGGTGGTGGTGCTAA
CACTGTGGCTTCTGGCTACAACAAAGGATCAGCCTTGGGTGCTGAGATTA
TTGGTACCTTCGTGCTTGTTTACACAGTCTTCTCGGCCACAGACCCCAAG
AGAAGCGCTCGTGACTCTCACGTGCCCGTTTTGGCTCCACTTCCAATTGG
ATTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCCATCACTGGAACGG
GCATAAACCCTGCTAGGAGCTTTGGTGCTGCTGATATCTACAACAATGAC
AAGGCCTGGGATGACCATTGGATCTTATGGGAAGGACTTAAAAGGAACTT
back to top