BQ623173

Overview
NameBQ623173
Unique NameBQ623173
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623173_ssr153 microsatellite BQ623173_ssr153:153..164. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12816 contig Csv1_Contig12816:45..615. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623173 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.432e-14
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  255 VHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTL 560
            VH+ LG G  AD+ LWRN+  +  +L  +T  W LF+   Y+LL+ V + L++ +A+ FLW+ ++T +N+  P +P + IPEE   + A  LR  IN   ++
Sbjct:   13 VHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSI 114          
BLAST of BQ623173 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.166e-14
Identity = 35/114 (30.70%), Postives = 65/114 (57.02%), Query Frame = 3
Query:  228 FRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLRE 569
            +RL GR+  VH+ +GGGK AD+ LWR + +S GV+  +T  W++F+      L++    L++ + + F+ +  S F N+    +PE+ + EE V   A++ R ++N    +  +
Sbjct:   23 YRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHD 136          
BLAST of BQ623173 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.700e-13
Identity = 34/108 (31.48%), Postives = 61/108 (56.48%), Query Frame = 3
Query:  246 EKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLRE 569
            E+ VH+ +  G  AD+ +W+N++    +LG  T +W LF+   Y     V +  ++++ +LFLW+ ++   N+  P++P + I EE V  +A A+R  IN    + RE
Sbjct:    2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVARE 109          
BLAST of BQ623173 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.750e-12
Identity = 33/88 (37.50%), Postives = 53/88 (60.23%), Query Frame = 3
Query:  243 REKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWS--NASTFINKSPPRIPEVYIPE 500
            R + ++  LGGG+ AD+  W+NKK S  +LG  T IW LF+++EY  +T +C  L++ + +  +WS   +S  I   PP I ++ I E
Sbjct:   18 RRRSLYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGSSQLIQSKPPSINDLRISE 105          
The following BLAST results are available for this feature:
BLAST of BQ623173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RTNLK_ARATH1.432e-1437.25Reticulon-like protein B11 OS=Arabidopsis thaliana... [more]
RTNLP_ARATH4.166e-1430.70Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]
RTNLJ_ARATH2.700e-1331.48Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]
RTNLN_ARATH1.750e-1237.50Reticulon-like protein B14 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00264 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00264 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623173 ID=BQ623173; Name=BQ623173; organism=Citrus sinensis; type=EST; length=571bp
CGAGCTTCTTTCATTTCTCAAAGTTAAAAAGGTTTGAAAACACCGAGTGA
GGGATTTGTACAGAGAGCGAGATGGCTGACGAGCATAAACACGAGGAACC
AGCCGGTGAATCGGTGATGGAGAAGATAACGGAGAAGATCCACGGCCACG
ATTCGTCGTCGTCGTCATCGTCATCTGACACCGATGATGATAAGAAGTCA
TCTACATCCTCCCTCAAGACCAAAGTATTTCGTCTCTTCGGAAGAGAAAA
GCCTGTTCACAAGGTTCTTGGTGGCGGAAAACCTGCGGATGTTTTCTTAT
GGAGGAACAAGAAGATTTCAGCAGGAGTACTTGGTGGGGCTACTGCAATA
TGGGTTCTGTTTCAATTGCTTGAGTACCACCTTCTAACTCTTGTCTGTCA
CTGCCTGATTGTTGCACTTGCGGTGCTTTTCTTGTGGTCTAATGCTTCCA
CCTTCATTAACAAGTCTCCACCACGCATTCCGGAAGTATATATCCCTGAG
GAACCAGTTTTACAGTTGGCCTCTGCACTTAGGTTTGAGATCAATAGGGC
CTTCACTCTTCTGAGGGAAAT
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