BQ623178

Overview
NameBQ623178
Unique NameBQ623178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10513 contig Csv1_Contig10513:551..1163. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH601_CHLCV (60 kDa chaperonin 1 OS=Chlamydophila caviae GN=groL1 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.186e-34
Identity = 81/194 (41.75%), Postives = 114/194 (58.76%), Query Frame = 1
Query:   13 LNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            L+ V+GM    G  S YF T+   +ECVL+ ALVLIYD KIS               G+ LL++AED+E E L  +  +      +VC +KA G  + RKA++ED+AILTGGQ+++   GM         LG  K+VI + ++  I+ G G   DI+ RCE ++  I+ STSD    KL++RLAKLSGG AV++
Sbjct:  187 LDVVEGMNFNRGYLSSYFSTNPETQECVLEEALVLIYDKKISGIKDFLPVLQQVAESGRPLLIIAEDIEGEALATLVVNRLRAGFRVCAVKAPGFGDRRKAMLEDIAILTGGQLISEELGMKLENTTLAMLGKAKKVIVSKEDTTIVEGLGSKEDIESRCESIKKQIEDSTSDYDKEKLQERLAKLSGGVAVIR 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_GEMAT (60 kDa chaperonin OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=groL PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.140e-34
Identity = 82/193 (42.49%), Postives = 113/193 (58.55%), Query Frame = 1
Query:   13 LNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVL 579
            L  V GM+ + G  SPYF T   K E VL+ AL+LI+D KIS    +  A       G+ LL++AEDVE E L  +  +    T ++C +KA G  + RKA+++D+A LT GQV++   G      V   LGS KR++   DN  II G+GE  DI+ R  ++R  I  STSD    KL++RLAKL+GG AV+
Sbjct:  187 LETVDGMQFDRGYLSPYFVTDPEKMEAVLENALILIHDKKISAMKDLLPALEKVAQLGKPLLIIAEDVEGEALATLVVNKLRGTLRICAVKAPGFGDRRKAMLQDIATLTKGQVISDEVGFKLENAVLTDLGSAKRIVIDKDNTTIIDGAGEQKDIEGRVREIRGAIDKSTSDYDREKLQERLAKLAGGVAVI 379          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_ELUMP (60 kDa chaperonin OS=Elusimicrobium minutum (strain Pei191) GN=groL PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.140e-34
Identity = 79/194 (40.72%), Postives = 114/194 (58.76%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVL 579
            EL  V+GM+ + G  SPYF T   + ECVL+   +++ D K+S+ N +       +  G++ L++AEDV+ E L  +  +    T K C +KA G  + RK ++ED+AILTGGQV+    GM         LGS KRV+   +N  I+ G G+   I+ R EQ+R  I+ STSD    KL++RLAKLSGG AV+
Sbjct:  184 ELQVVEGMQFDRGYISPYFVTDSERMECVLEDCQIILADKKVSSMNELLPLLEGIVKNGRNFLIIAEDVDGEALATLVVNRLRGTLKGCAVKAPGFGDRRKEMLEDIAILTGGQVIAEERGMKLETATLDMLGSAKRVVIDKENATIVSGEGDKKKIEARAEQIRKQIENSTSDYDKEKLQERLAKLSGGVAVI 377          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_CHLPN (60 kDa chaperonin OS=Chlamydia pneumoniae GN=groL PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 7.140e-34
Identity = 80/194 (41.24%), Postives = 114/194 (58.76%), Query Frame = 1
Query:   13 LNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            L+ V+GM    G  S YF T+   +ECVL+ AL+LIYD KIS               G+ LL++AE++E E L  +  +      +VC +KA G  + RKA++ED+AILTGGQ+++   GM         LG  K+VI T ++  I+ G G   DIQ RC+ ++  I+ STSD    KL++RLAKLSGG AV++
Sbjct:  187 LDVVEGMNFNRGYLSSYFSTNPETQECVLEDALILIYDKKISGIKDFLPVLQQVAESGRPLLIIAEEIEGEALATLVVNRLRAGFRVCAVKAPGFGDRRKAMLEDIAILTGGQLVSEELGMKLENTTLAMLGKAKKVIVTKEDTTIVEGLGNKPDIQARCDNIKKQIEDSTSDYDKEKLQERLAKLSGGVAVIR 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_CHLFF (60 kDa chaperonin OS=Chlamydophila felis (strain Fe/C-56) GN=groL PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.591e-33
Identity = 80/194 (41.24%), Postives = 114/194 (58.76%), Query Frame = 1
Query:   13 LNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            L+ V+GM    G  S YF T+   +ECVL+ +LVLIYD KIS               G+ LL++AED+E E L  +  +      +VC +KA G  + RKA++ED+AILTGGQ+++   GM         LG  K+VI + ++  I+ G G   DI+ RCE ++  I+ STSD    KL++RLAKLSGG AV++
Sbjct:  187 LDVVEGMNFNRGYLSSYFTTNPETQECVLEESLVLIYDKKISGIKDFLPVLQQVAESGRPLLIIAEDIEGEALATLVVNRLRAGFRVCAVKAPGFGDRRKAMLEDIAILTGGQLISEELGMKLENTTLSMLGKAKKVIVSKEDTTIVEGLGNKEDIEARCENIKKQIEDSTSDYDKEKLQERLAKLSGGVAVIR 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH602_POLNA (60 kDa chaperonin 2 OS=Polaromonas naphthalenivorans (strain CJ2) GN=groL2 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.591e-33
Identity = 79/196 (40.31%), Postives = 117/196 (59.69%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            +EL+ V+GM+ + G  SPYF  +  K+  +LD   VL+YD KISN   +          G+ LL++AE+VE E L  +  +      KV  +KA G  + RKA++ED+A+LTGG+V+    GM+        LG  KR+    +N +II GSGE  DI+ R +Q+R  I+ +TSD    KL++R+AKL+GG AV+K
Sbjct:  185 SELDVVEGMQFDRGYLSPYFINNPEKQSALLDNPFVLLYDKKISNIRDLLPTLEQVAKAGRPLLIIAEEVEGEALATLVVNTLRGILKVVAVKAPGFGDRRKAMLEDIAVLTGGKVIAEEVGMSLEKVTLADLGQAKRIEVGKENTIIIDGSGEAADIEARVKQVRVQIEEATSDYDREKLQERVAKLAGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH603_RHOBA (60 kDa chaperonin 3 OS=Rhodopirellula baltica GN=groL3 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.543e-33
Identity = 80/192 (41.67%), Postives = 114/192 (59.38%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYA 573
            E  +V+GM+ + G  SPYF T     E VL+ A VL+++ KISN   +       + QG+ LL++AEDV+ E L  +  +    T  VC +KA G  + RKA+MED+AILTGGQ +    G+        +LG  K++I   DN  +I G G+  DI+ R +Q+R  I+LSTSD    KL++RLAKL+GG A
Sbjct:  185 EQEWVEGMQFDRGYLSPYFVTDSTSMEVVLEDAYVLVFEKKISNIKDMVPLLEKVVQQGKPLLIIAEDVDGEALATLVINRLRGTFTVCAVKAPGYGDRRKAMMEDIAILTGGQAIFEALGVKLESVDLPQLGRAKKIIVDKDNTTVIEGGGKSADIKARIDQIRREIELSTSDYDREKLEERLAKLAGGVA 376          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH601_RHOFD (60 kDa chaperonin 1 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=groL1 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.543e-33
Identity = 79/196 (40.31%), Postives = 117/196 (59.69%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            +EL+ V+GM+ + G  SPYF  +  K+  +LD   VL+YD KISN   +          G+ LL+++EDVE E L  +  +      KV  +KA G  + RKA++ED+AILTGG+V+    GM+        LGS KR+    +N +II G+G   DI+ R +Q+R  I+ +TSD    KL++R+AKL+GG AV+K
Sbjct:  185 SELDVVEGMQFDRGYLSPYFINNPEKQAALLDNPFVLLYDKKISNIRDLLPTLEQVAKSGRPLLIISEDVEGEALATLVVNTIRGILKVVAVKAPGFGDRRKAMLEDIAILTGGKVIAEEVGMSLEKVTLADLGSAKRIEVGKENTIIIDGAGAAADIEARVKQVRVQIEEATSDYDREKLQERVAKLAGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_CHLMU (60 kDa chaperonin OS=Chlamydia muridarum GN=groL PE=2 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 6.044e-33
Identity = 80/194 (41.24%), Postives = 113/194 (58.25%), Query Frame = 1
Query:   13 LNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            L+ V+GM    G  S YF T+   +ECVL+ ALVLIYD KIS               G+ LL++AED+E E L  +  +      +VC +KA G  + RKA++ED+AILTGGQ+++   GM         LG  K+VI + ++  I+ G GE   +  RCE ++  I+ STSD    KL++RLAKLSGG AV++
Sbjct:  187 LDVVEGMNFNRGYLSSYFATNPETQECVLEDALVLIYDKKISGIKDFLPVLQQVAESGRPLLIIAEDIEGEALATLVVNRIRGGFRVCAVKAPGFGDRRKAMLEDIAILTGGQLISEELGMKLENASLAMLGKAKKVIVSKEDTTIVEGMGEKEALDARCESIKKQIEDSTSDYDKEKLQERLAKLSGGVAVIR 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_BACHD (60 kDa chaperonin OS=Bacillus halodurans GN=groL PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 6.044e-33
Identity = 80/195 (41.03%), Postives = 115/195 (58.97%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            EL  V+GM+ + G  SPY  T  +K E VLD   VLI D KISN   +       + QG+ +L++AEDVE E L  +  +    T     +KA G  + RKA++ED+AILTGG+V+T   G++       +LG   +V+ T +N  I+ G+GE   I  R  Q+++ I+ +TSD    KL++RLAKL+GG AVLK
Sbjct:  184 ELEVVEGMQFDRGYASPYMVTDSDKMEAVLDNPYVLITDKKISNIQEVLPVLEQVVQQGKPILIIAEDVEGEALATLVVNKLRGTFNAVAVKAPGFGDRRKAMLEDIAILTGGEVITEDLGLDLKSANITQLGRASKVVVTKENTTIVEGAGESDKIAARVNQIKAQIEETTSDFDKEKLQERLAKLAGGVAVLK 378          
The following BLAST results are available for this feature:
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_CHLCV4.186e-3441.7560 kDa chaperonin 1 OS=Chlamydophila caviae GN=gro... [more]
CH60_GEMAT7.140e-3442.4960 kDa chaperonin OS=Gemmatimonas aurantiaca (stra... [more]
CH60_ELUMP7.140e-3440.7260 kDa chaperonin OS=Elusimicrobium minutum (strai... [more]
CH60_CHLPN7.140e-3441.2460 kDa chaperonin OS=Chlamydia pneumoniae GN=groL ... [more]
CH60_CHLFF1.591e-3341.2460 kDa chaperonin OS=Chlamydophila felis (strain F... [more]
CH602_POLNA1.591e-3340.3160 kDa chaperonin 2 OS=Polaromonas naphthalenivora... [more]
CH603_RHOBA3.543e-3341.6760 kDa chaperonin 3 OS=Rhodopirellula baltica GN=g... [more]
CH601_RHOFD3.543e-3340.3160 kDa chaperonin 1 OS=Rhodoferax ferrireducens (s... [more]
CH60_CHLMU6.044e-3341.2460 kDa chaperonin OS=Chlamydia muridarum GN=groL P... [more]
CH60_BACHD6.044e-3341.0360 kDa chaperonin OS=Bacillus halodurans GN=groL P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00269 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00269 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623178 ID=BQ623178; Name=BQ623178; organism=Citrus sinensis; type=EST; length=613bp
GGCTATAATGAATTAAATTTTGTTAAGGGAATGAAACTAGAGTGGGGTCT
TAAATCCCCATACTTCTTCACCCATAAGAATAAAAAAGAATGTGTTTTAG
ATGGTGCATTGGTTTTGATCTATGACACGAAAATTTCAAACTCCAATGTT
ATCAGGCAAGCATGTTTGCCATGTATGATGCAGGGACAAAGCTTATTGGT
TGTTGCTGAAGATGTTGAAAACGAAGTTCTAGGAGATATTGCGACAGACT
TCACCTGTACTACTGAAAAGGTTTGTATCATCAAAGCTGCTGGATTGGCA
GAAGATAGGAAGGCCATCATGGAGGACCTTGCAATTCTCACAGGAGGCCA
GGTTTTAACTGGAGGCTCAGGTATGAACTCTACGTATTTTGTGCCTCTAA
AGCTTGGCTCATGCAAAAGGGTTATAGCAACAATGGATAATGTTGTTATC
ATTGGTGGGTCTGGTGAATTGGTAGACATTCAAGAAAGATGTGAACAGCT
GAGATCTACAATAAAATTGAGCACTTCGGACAAGTTGAAAGATCGCCTTG
CAAAACTTTCTGGTGGATATGCCGTTTTGAAGGGTTGTGGACATGGGTAA
AGCTGAAGTGCGT
back to top