BQ623178

Overview
NameBQ623178
Unique NameBQ623178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_PSEMY (60 kDa chaperonin OS=Pseudomonas mendocina (strain ymp) GN=groL PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.489e-31
Identity = 78/196 (39.80%), Postives = 114/196 (58.16%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            NEL+ V+GM+ + G  SPYF    +     L+G L+L+ D KISN   +          G+ LL+VAEDVE E L  +  +      KV  +KA G  + RKA+++D+AILTGG V++   G++        LG+ KRV+   DN  II G+G   DI+ R  Q+R  ++ ++SD    KL++RLAKL+GG AV+K
Sbjct:  185 NELSVVEGMQFDRGYLSPYFINKPDTMVAELEGPLLLLVDKKISNIRELLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLESATLEHLGNAKRVVLNKDNTTIIDGAGAQADIEARVAQIRKQVEETSSDYDKEKLQERLAKLAGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_PELPB (60 kDa chaperonin OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=groL PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.489e-31
Identity = 77/194 (39.69%), Postives = 109/194 (56.19%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVL 579
            EL  V+GM+ + G  SPYF T+    +  L+  L+LIYD KISN   +          G+ LL+++ED+E E L  I  +    T +VC +KA G  + RKA++ED+AILTGG V++   G          LG   RV    DN  I+ G G   +I+ R  +++  ++ STSD    KL++RLAKLSGG AVL
Sbjct:  186 ELKVVEGMQFDRGYLSPYFVTNSETMDAELEDPLILIYDKKISNMKELLPILEKSAQSGRPLLIISEDIEGEALATIVVNKLRGTLRVCAVKAPGFGDRRKAMLEDIAILTGGTVISEEKGYKLENATISYLGQAGRVTVDKDNTTIVEGKGGAEEIKARINEIKGQVEKSTSDYDTEKLQERLAKLSGGVAVL 379          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_LISW6 (60 kDa chaperonin OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=groL PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.489e-31
Identity = 76/195 (38.97%), Postives = 116/195 (59.49%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLK 582
            EL+ V+GM+ + G  SPY  T  +K E VL+   +LI D KI+N   I       + QG+ +L++AEDVE E    +  +    T  V  +KA G  + RKA++ED+AILTGGQV+T   G+        +LG+  +V+ T D+  I+ G+G+   I  R  Q+R+ ++ +TS    +KL++RLAKL+GG AV+K
Sbjct:  184 ELDVVEGMQFDRGYTSPYMVTDSDKMEAVLEKPYILITDKKINNIQEILPVLEQVVQQGRPMLIIAEDVEGEAQATLVLNKLRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGQVITEDLGLELKTATVDQLGTANKVVVTKDDTTIVEGAGDSTQISARVNQIRAQMEETTSEFDREKLQERLAKLAGGVAVVK 378          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_LISMO (60 kDa chaperonin OS=Listeria monocytogenes GN=groL PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.489e-31
Identity = 76/195 (38.97%), Postives = 116/195 (59.49%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLK 582
            EL+ V+GM+ + G  SPY  T  +K E VL+   +LI D KI+N   I       + QG+ +L++AEDVE E    +  +    T  V  +KA G  + RKA++ED+AILTGGQV+T   G+        +LG+  +V+ T D+  I+ G+G+   I  R  Q+R+ ++ +TS    +KL++RLAKL+GG AV+K
Sbjct:  184 ELDVVEGMQFDRGYTSPYMVTDSDKMEAVLEKPYILITDKKINNIQEILPVLEQVVQQGRPMLIIAEDVEGEAQATLVLNKLRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGQVITEDLGLELKTATVDQLGTANKVVVTKDDTTIVEGAGDSTQISARVNQIRAQMEETTSEFDREKLQERLAKLAGGVAVVK 378          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_LISMF (60 kDa chaperonin OS=Listeria monocytogenes serotype 4b (strain F2365) GN=groL PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.489e-31
Identity = 76/195 (38.97%), Postives = 116/195 (59.49%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLK 582
            EL+ V+GM+ + G  SPY  T  +K E VL+   +LI D KI+N   I       + QG+ +L++AEDVE E    +  +    T  V  +KA G  + RKA++ED+AILTGGQV+T   G+        +LG+  +V+ T D+  I+ G+G+   I  R  Q+R+ ++ +TS    +KL++RLAKL+GG AV+K
Sbjct:  184 ELDVVEGMQFDRGYTSPYMVTDSDKMEAVLEKPYILITDKKINNIQEILPVLEQVVQQGRPMLIIAEDVEGEAQATLVLNKLRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGQVITEDLGLELKTATVDQLGTANKVVVTKDDTTIVEGAGDSTQISARVNQIRAQMEETTSEFDREKLQERLAKLAGGVAVVK 378          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_LISMC (60 kDa chaperonin OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=groL PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.489e-31
Identity = 76/195 (38.97%), Postives = 116/195 (59.49%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLK 582
            EL+ V+GM+ + G  SPY  T  +K E VL+   +LI D KI+N   I       + QG+ +L++AEDVE E    +  +    T  V  +KA G  + RKA++ED+AILTGGQV+T   G+        +LG+  +V+ T D+  I+ G+G+   I  R  Q+R+ ++ +TS    +KL++RLAKL+GG AV+K
Sbjct:  184 ELDVVEGMQFDRGYTSPYMVTDSDKMEAVLEKPYILITDKKINNIQEILPVLEQVVQQGRPMLIIAEDVEGEAQATLVLNKLRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGQVITEDLGLELKTATVDQLGTANKVVVTKDDTTIVEGAGDSTQISARVNQIRAQMEETTSEFDREKLQERLAKLAGGVAVVK 378          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_LISIN (60 kDa chaperonin OS=Listeria innocua GN=groL PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.489e-31
Identity = 75/195 (38.46%), Postives = 116/195 (59.49%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLK 582
            EL+ V+GM+ + G  SPY  T  +K E VL+   +LI D KI+N   I       + QG+ +L++AEDVE E    +  +    T  V  +KA G  + RKA++ED+A+LTGGQV+T   G+        +LG+  +V+ T D+  I+ G+G+   I  R  Q+R+ ++ +TS    +KL++RLAKL+GG AV+K
Sbjct:  184 ELDVVEGMQFDRGYTSPYMVTDSDKMEAVLEKPYILITDKKINNIQEILSVLEQVVQQGRPMLIIAEDVEGEAQATLVLNKLRGTFNVVAVKAPGFGDRRKAMLEDIAVLTGGQVITEDLGLELKTATVDQLGTANKVVVTKDDTTIVEGAGDSTQISARVNQIRAQMEETTSEFDREKLQERLAKLAGGVAVVK 378          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_LEGPL (60 kDa chaperonin OS=Legionella pneumophila (strain Lens) GN=groL PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.489e-31
Identity = 74/196 (37.76%), Postives = 115/196 (58.67%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            NEL+ V+GM+ + G  SPYF  ++    C L+   +L+ D K+S+   +          G+ LL++AEDVE E L  +  +      KVC +KA G  + RKA+++D+AILT GQV++   G +        LGS KR++ T +N  II G G+  +I  R  Q+R+ ++ +TSD    KL++R+AKL+GG AV+K
Sbjct:  184 NELSVVEGMQFDRGYISPYFINNQQNMSCELEHPFILLVDKKVSSIREMLSVLEGVAKSGRPLLIIAEDVEGEALATLVVNNMRGIVKVCAVKAPGFGDRRKAMLQDIAILTKGQVISEEIGKSLEGATLEDLGSAKRIVVTKENTTIIDGEGKATEINARITQIRAQMEETTSDYDREKLQERVAKLAGGVAVIK 379          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_LEGPH (60 kDa chaperonin OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=groL PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.489e-31
Identity = 74/196 (37.76%), Postives = 115/196 (58.67%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            NEL+ V+GM+ + G  SPYF  ++    C L+   +L+ D K+S+   +          G+ LL++AEDVE E L  +  +      KVC +KA G  + RKA+++D+AILT GQV++   G +        LGS KR++ T +N  II G G+  +I  R  Q+R+ ++ +TSD    KL++R+AKL+GG AV+K
Sbjct:  184 NELSVVEGMQFDRGYISPYFINNQQNMSCELEHPFILLVDKKVSSIREMLSVLEGVAKSGRPLLIIAEDVEGEALATLVVNNMRGIVKVCAVKAPGFGDRRKAMLQDIAILTKGQVISEEIGKSLEGATLEDLGSAKRIVVTKENTTIIDGEGKATEINARITQIRAQMEETTSDYDREKLQERVAKLAGGVAVIK 379          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_LEGPA (60 kDa chaperonin OS=Legionella pneumophila (strain Paris) GN=groL PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.489e-31
Identity = 74/196 (37.76%), Postives = 115/196 (58.67%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            NEL+ V+GM+ + G  SPYF  ++    C L+   +L+ D K+S+   +          G+ LL++AEDVE E L  +  +      KVC +KA G  + RKA+++D+AILT GQV++   G +        LGS KR++ T +N  II G G+  +I  R  Q+R+ ++ +TSD    KL++R+AKL+GG AV+K
Sbjct:  184 NELSVVEGMQFDRGYISPYFINNQQNMSCELEHPFILLVDKKVSSIREMLSVLEGVAKSGRPLLIIAEDVEGEALATLVVNNMRGIVKVCAVKAPGFGDRRKAMLQDIAILTKGQVISEEIGKSLEGATLEDLGSAKRIVVTKENTTIIDGEGKATEINARIAQIRAQMEETTSDYDREKLQERVAKLAGGVAVIK 379          
The following BLAST results are available for this feature:
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_PSEMY1.489e-3139.8060 kDa chaperonin OS=Pseudomonas mendocina (strain... [more]
CH60_PELPB1.489e-3139.6960 kDa chaperonin OS=Pelodictyon phaeoclathratifor... [more]
CH60_LISW61.489e-3138.9760 kDa chaperonin OS=Listeria welshimeri serovar 6... [more]
CH60_LISMO1.489e-3138.9760 kDa chaperonin OS=Listeria monocytogenes GN=gro... [more]
CH60_LISMF1.489e-3138.9760 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH60_LISMC1.489e-3138.9760 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH60_LISIN1.489e-3138.4660 kDa chaperonin OS=Listeria innocua GN=groL PE=3... [more]
CH60_LEGPL1.489e-3137.7660 kDa chaperonin OS=Legionella pneumophila (strai... [more]
CH60_LEGPH1.489e-3137.7660 kDa chaperonin OS=Legionella pneumophila subsp.... [more]
CH60_LEGPA1.489e-3137.7660 kDa chaperonin OS=Legionella pneumophila (strai... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00269 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00269 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623178 ID=BQ623178; Name=BQ623178; organism=Citrus sinensis; type=EST; length=613bp
GGCTATAATGAATTAAATTTTGTTAAGGGAATGAAACTAGAGTGGGGTCT
TAAATCCCCATACTTCTTCACCCATAAGAATAAAAAAGAATGTGTTTTAG
ATGGTGCATTGGTTTTGATCTATGACACGAAAATTTCAAACTCCAATGTT
ATCAGGCAAGCATGTTTGCCATGTATGATGCAGGGACAAAGCTTATTGGT
TGTTGCTGAAGATGTTGAAAACGAAGTTCTAGGAGATATTGCGACAGACT
TCACCTGTACTACTGAAAAGGTTTGTATCATCAAAGCTGCTGGATTGGCA
GAAGATAGGAAGGCCATCATGGAGGACCTTGCAATTCTCACAGGAGGCCA
GGTTTTAACTGGAGGCTCAGGTATGAACTCTACGTATTTTGTGCCTCTAA
AGCTTGGCTCATGCAAAAGGGTTATAGCAACAATGGATAATGTTGTTATC
ATTGGTGGGTCTGGTGAATTGGTAGACATTCAAGAAAGATGTGAACAGCT
GAGATCTACAATAAAATTGAGCACTTCGGACAAGTTGAAAGATCGCCTTG
CAAAACTTTCTGGTGGATATGCCGTTTTGAAGGGTTGTGGACATGGGTAA
AGCTGAAGTGCGT
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