BQ623178

Overview
NameBQ623178
Unique NameBQ623178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_PSEE4 (60 kDa chaperonin OS=Pseudomonas entomophila (strain L48) GN=groL PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.317e-31
Identity = 79/196 (40.31%), Postives = 117/196 (59.69%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            NEL+ V+GM+ + G  SPYF    +     L+G L+L+ D KISN   +          G+ LL+VAEDVE E L  +  +      KV  +KA G  + RKA+++D+A LTGGQV++   G++        LG+ KRVI + +N  II G+G   DI+ R +Q+R+ I+ ++SD    KL++RLAKL+GG AV+K
Sbjct:  185 NELSVVEGMQFDRGYLSPYFVNKPDTMVAELEGPLLLLVDKKISNIRELLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGQVISEEIGLSLETATLEHLGNAKRVILSKENTTIIDGAGADGDIEARVKQIRAQIEETSSDYDREKLQERLAKLAGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_LEGPN (60 kDa chaperonin OS=Legionella pneumophila GN=groL PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.317e-31
Identity = 74/196 (37.76%), Postives = 114/196 (58.16%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            NEL  V+GM+ + G  SPYF  ++    C L+   +L+ D K+S+   +          G+ LL++AEDVE E L  +  +      KVC +KA G  + RKA+++D+AILT GQV++   G +        LGS KR++ T +N  II G G+  +I  R  Q+R+ ++ +TSD    KL++R+AKL+GG AV+K
Sbjct:  184 NELYVVEGMQFDRGYISPYFINNQQNMSCELEHPFILLVDKKVSSIREMLSVLEGVAKSGRPLLIIAEDVEGEALATLVVNNMRGIVKVCAVKAPGFGDRRKAMLQDIAILTKGQVISEEIGKSLEGATLEDLGSAKRIVVTKENTTIIDGEGKATEINARIAQIRAQMEETTSDYDREKLQERVAKLAGGVAVIK 379          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_GEOMG (60 kDa chaperonin OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=groL PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.317e-31
Identity = 79/197 (40.10%), Postives = 116/197 (58.88%), Query Frame = 1
Query:   13 LNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGM---NSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            L  V+GM+ + G  SPYF T   + E  L+ A +LI+D KISN   +          G+ LL++AED+E E L  +  +       +C +KA G  + RKA++ED+A+LTGG+V++   G    N+T+ +   LG+ KRV    DN  II G G   DIQ R +Q+R+ I+ ++SD    KL++RLAKL GG AV+K
Sbjct:  186 LETVEGMQFDRGYLSPYFVTDPERMEASLENANILIHDKKISNMKDLLPILEQTAKSGRPLLIIAEDIEGEALATLVVNKLRGVLNICAVKAPGFGDRRKAMLEDIAVLTGGKVISEELGFKLENATFDM---LGTAKRVTIDKDNTTIIDGDGSEADIQGRVKQIRAQIEETSSDYDREKLQERLAKLVGGVAVIK 379          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_DIAST (60 kDa chaperonin OS=Diaphorobacter sp. (strain TPSY) GN=groL PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.317e-31
Identity = 75/196 (38.27%), Postives = 113/196 (57.65%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            NEL+ V+GM+ + G  SPYF  +  K+  +LD   VL++D KISN   +           + LL++AE+V+ E L  +  +      KV  +KA G  + RKA++ED+AILTGG+V+    G+         LG  KR+    +N  II G+G   DI+ R +Q+R  I+ +TSD    KL++R+AKL+GG AV+K
Sbjct:  185 NELDVVEGMQFDRGYLSPYFINNPEKQSAILDNPFVLLFDKKISNIRDLLPTLEQVAKASRPLLIIAEEVDGEALATLVVNTIRGILKVVAVKAPGFGDRRKAMLEDIAILTGGKVIAEEVGLTLEKVTLADLGQAKRIEVGKENTTIIDGAGAAADIEARVKQIRIQIEEATSDYDREKLQERVAKLAGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_CHLT3 (60 kDa chaperonin OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=groL PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.317e-31
Identity = 78/194 (40.21%), Postives = 110/194 (56.70%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVL 579
            EL  V+GM+ + G  SPYF T+ +  E VLD   +LIYD KISN   +          G+ LL++AE++E E L  +  +    T KVC +KA G  + RKA++ED+AILTGG V++   G          LG    V    DN  I+ G G   DI+ R  ++++ ++ +TSD    KL++RLAKLSGG AVL
Sbjct:  186 ELKVVEGMQFDRGYLSPYFVTNADSMEAVLDEPYILIYDKKISNMKELLPILEKTAQSGRPLLIIAEEIEGEALATLVVNKLRGTLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEEKGYKLENATIGYLGQAGSVTIDKDNSTIVEGKGTEDDIKARINEIKNQVEKATSDYDKEKLQERLAKLSGGVAVL 379          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_CHLCH (60 kDa chaperonin OS=Chlorobium chlorochromatii (strain CaD3) GN=groL PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.317e-31
Identity = 78/194 (40.21%), Postives = 108/194 (55.67%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVL 579
            EL  V+GM+ + G  SPYF T+ +  E  LD  L+LIYD KISN   +          G+ LL++AED+E E L  +  +    T KVC +KA G  + RKA++ED+AILTGG V++   G          LG    V    DN  ++ G G    I+ R  +++  I+ STSD    KL++RLAKLSGG AV+
Sbjct:  186 ELKVVEGMQFDRGYLSPYFVTNSDTMEAELDNPLILIYDKKISNMKELLPILEKSAQSGRPLLIIAEDIEGEALATLVVNKLRGTLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEEKGYKLENATLSYLGQAGSVSLDKDNTTLVEGKGASDAIKARINEIKGQIEKSTSDYDTEKLQERLAKLSGGVAVI 379          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_CAMHC (60 kDa chaperonin OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=groL PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.317e-31
Identity = 74/196 (37.76%), Postives = 115/196 (58.67%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            +ELN V+GM+ + G  SPYF T   K +  L+  LVL++D KI+N   +          G+ LL++AED+E E L  +  +       +  +KA G  + RKA++ED+AILTGG V++   G          LG  +R++   DN  I+ G+G+  DI+ R +Q+++ I +++SD    KL++RLAKLSGG AV+K
Sbjct:  184 DELNVVEGMQFDRGYLSPYFITDAEKMQVELNSPLVLLFDKKITNLKDLLPVLEQVQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVKAPGFGDRRKAMLEDIAILTGGTVISEELGRTLESASIADLGKAERILIDKDNTTIVNGAGKKDDIKARVDQIKAQIAVTSSDYDREKLQERLAKLSGGVAVIK 379          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_ALTMD (60 kDa chaperonin OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=groL PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.317e-31
Identity = 75/196 (38.27%), Postives = 113/196 (57.65%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            NEL+ V+GM+ + G  SPYF  ++      LD   +L+ D KISN   +          G+ L+++AEDVE E L  +  +      KV  +KA G  + RKA+++D+AILTGG V++   G+         LG+ KRV+   DN  ++ G+G+   I+ RC Q++  I+ S+SD    KL++RLAKLSGG AV+K
Sbjct:  185 NELDVVEGMQFDRGYLSPYFINNQENGTVELDNPFILLVDKKISNIRELLPTLEGVAKAGKPLMIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEIGLELEKVQLEDLGTAKRVVINKDNTTVVDGNGDQEAIEGRCAQIKGQIEESSSDYDKEKLQERLAKLSGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH602_RHOP2 (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris (strain HaA2) GN=groL2 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.317e-31
Identity = 75/195 (38.46%), Postives = 117/195 (60.00%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            EL+ V+GM+ + G  SPYF T+ +K     D A +LI + K+SN N +       +  G+ L++VAEDVE E L  +  +      KV  +KA G  + RKA+++D+AILTGGQ ++   G+         LG  K+V+   +N  I+ G+G+ VDI+ R  Q+++ I+ +TSD    KL++RLAKL+GG AV++
Sbjct:  186 ELDVVEGMQFDRGYISPYFVTNADKMRVEFDDAYILINEKKLSNLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKMENVTLQMLGRAKKVMIDKENTTIVNGAGKKVDIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIR 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH601_FRASC (60 kDa chaperonin 1 OS=Frankia sp. (strain CcI3) GN=groL1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.317e-31
Identity = 75/195 (38.46%), Postives = 113/195 (57.95%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            +L   +GM+ + G  SPYF T    +E VL+ A VL+Y  KIS  N I       + + + LL++AE+VE E L  +  +    T +V  +KA G  + RKA+++D+A+LTGGQV+    G++        LG  +RV+   DN  I+ G GE   I +R  QL+  I++S SD    KL++RLAKL+GG AV++
Sbjct:  184 DLELTEGMQFDKGYISPYFVTDAEAQEAVLEDAYVLLYPGKISALNEILPVLEQVVQERKPLLIIAEEVEGEALSTLVVNSIRKTFQVVAVKAPGFGDRRKALLQDIAVLTGGQVVASEVGLSLDAVTLADLGRARRVVVDKDNTTIVDGVGEASSIADRVRQLKQEIEVSDSDWDREKLQERLAKLAGGVAVIR 378          
The following BLAST results are available for this feature:
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_PSEE43.317e-3140.3160 kDa chaperonin OS=Pseudomonas entomophila (stra... [more]
CH60_LEGPN3.317e-3137.7660 kDa chaperonin OS=Legionella pneumophila GN=gro... [more]
CH60_GEOMG3.317e-3140.1060 kDa chaperonin OS=Geobacter metallireducens (st... [more]
CH60_DIAST3.317e-3138.2760 kDa chaperonin OS=Diaphorobacter sp. (strain TP... [more]
CH60_CHLT33.317e-3140.2160 kDa chaperonin OS=Chloroherpeton thalassium (st... [more]
CH60_CHLCH3.317e-3140.2160 kDa chaperonin OS=Chlorobium chlorochromatii (s... [more]
CH60_CAMHC3.317e-3137.7660 kDa chaperonin OS=Campylobacter hominis (strain... [more]
CH60_ALTMD3.317e-3138.2760 kDa chaperonin OS=Alteromonas macleodii (strain... [more]
CH602_RHOP23.317e-3138.4660 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH601_FRASC3.317e-3138.4660 kDa chaperonin 1 OS=Frankia sp. (strain CcI3) G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00269 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00269 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623178 ID=BQ623178; Name=BQ623178; organism=Citrus sinensis; type=EST; length=613bp
GGCTATAATGAATTAAATTTTGTTAAGGGAATGAAACTAGAGTGGGGTCT
TAAATCCCCATACTTCTTCACCCATAAGAATAAAAAAGAATGTGTTTTAG
ATGGTGCATTGGTTTTGATCTATGACACGAAAATTTCAAACTCCAATGTT
ATCAGGCAAGCATGTTTGCCATGTATGATGCAGGGACAAAGCTTATTGGT
TGTTGCTGAAGATGTTGAAAACGAAGTTCTAGGAGATATTGCGACAGACT
TCACCTGTACTACTGAAAAGGTTTGTATCATCAAAGCTGCTGGATTGGCA
GAAGATAGGAAGGCCATCATGGAGGACCTTGCAATTCTCACAGGAGGCCA
GGTTTTAACTGGAGGCTCAGGTATGAACTCTACGTATTTTGTGCCTCTAA
AGCTTGGCTCATGCAAAAGGGTTATAGCAACAATGGATAATGTTGTTATC
ATTGGTGGGTCTGGTGAATTGGTAGACATTCAAGAAAGATGTGAACAGCT
GAGATCTACAATAAAATTGAGCACTTCGGACAAGTTGAAAGATCGCCTTG
CAAAACTTTCTGGTGGATATGCCGTTTTGAAGGGTTGTGGACATGGGTAA
AGCTGAAGTGCGT
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