BQ623178

Overview
NameBQ623178
Unique NameBQ623178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH602_RHOP5 (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris (strain BisA53) GN=groL2 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.657e-31
Identity = 74/195 (37.95%), Postives = 116/195 (59.49%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            EL+ V+GM+ + G  SPYF T+ +K     D A +LI + K+SN N +       +  G+ L++VAEDVE E L  +  +      KV  +KA G  + RKA+++D+AILTGGQ ++   G+         LG  K+V+   +N  I+ G+G+  DI+ R  Q+++ I+ +TSD    KL++RLAKL+GG AV++
Sbjct:  186 ELDVVEGMQFDRGYISPYFVTNADKMRVEFDDAYILINEKKLSNLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKMENVTLAMLGKAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIR 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH601_RHOPB (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain BisB18) GN=groL1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.657e-31
Identity = 74/195 (37.95%), Postives = 116/195 (59.49%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            EL+ V+GM+ + G  SPYF T+ +K     D A +LI + K+SN N +       +  G+ L++VAEDVE E L  +  +      KV  +KA G  + RKA+++D+AILTGGQ ++   G+         LG  K+V+   +N  I+ G+G+  DI+ R  Q+++ I+ +TSD    KL++RLAKL+GG AV++
Sbjct:  186 ELDVVEGMQFDRGYISPYFVTNADKMRVEFDDAYILINEKKLSNLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKMENVTLAMLGKAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIR 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_ZYMMO (60 kDa chaperonin OS=Zymomonas mobilis GN=groL PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 7.388e-31
Identity = 76/195 (38.97%), Postives = 115/195 (58.97%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            EL+ V+GM+ + G  SPYF T+  K    L    +LIY+ K+SN   I       +  G+ LL++AED+E E L  +  +      KV  +KA G  + RKA++ED+AILT G++++   G+         LGS KRV  T +N  I+ G+G+   I++R E +RS I+ +TSD    KL++R+AKL+GG AV+K
Sbjct:  186 ELDVVEGMQFDRGYLSPYFITNPEKMVAELADPYILIYEKKLSNLQSILPILESVVQSGRPLLIIAEDIEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTKGELISEDLGIKLENVTLNMLGSAKRVSITKENTTIVDGAGDQSTIKDRVEAIRSQIEATTSDYDREKLQERVAKLAGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_SHEB8 (60 kDa chaperonin OS=Shewanella baltica (strain OS185) GN=groL PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.388e-31
Identity = 79/196 (40.31%), Postives = 109/196 (55.61%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            NEL+ V+GM+ + G  SPYF          LD   VL+ D KISN   +          G+ LL+VAEDVE E L  +  +      KV  +KA G  + RKA+++D+AILTGG V+    G+         LG+ KRV+ T DN  II G+GE   I  R  Q++  ++ STSD    KL++R+AKL+GG AV+K
Sbjct:  185 NELDVVEGMQFDRGYLSPYFINKPETGSVELDHPFVLLVDKKISNIRELLPILEGLAKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDVAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGEQTQIAARVSQIKQQVEESTSDYDKEKLQERMAKLAGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_SHEB5 (60 kDa chaperonin OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=groL PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.388e-31
Identity = 79/196 (40.31%), Postives = 109/196 (55.61%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            NEL+ V+GM+ + G  SPYF          LD   VL+ D KISN   +          G+ LL+VAEDVE E L  +  +      KV  +KA G  + RKA+++D+AILTGG V+    G+         LG+ KRV+ T DN  II G+GE   I  R  Q++  ++ STSD    KL++R+AKL+GG AV+K
Sbjct:  185 NELDVVEGMQFDRGYLSPYFINKPETGSVELDHPFVLLVDKKISNIRELLPILEGLAKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDVAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGEQTQIAARVSQIKQQVEESTSDYDKEKLQERMAKLAGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_RICBR (60 kDa chaperonin OS=Rickettsia bellii (strain RML369-C) GN=groL PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.388e-31
Identity = 78/195 (40.00%), Postives = 113/195 (57.95%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            ++  VKGM  + G  SPYF T+  K    L+   +L+++ K+SN   +       +   + LL++AEDVE E L  +  +      KV  +KA G  + RKA+MED+AILT G+++T   GM         LG  KRV  + +N VI+ GSG+  +I+ER  Q++S I  +TSD    KL++RLAKLSGG AVLK
Sbjct:  186 DVEVVKGMMFDRGYLSPYFVTNSEKMVAELENPYILLFEKKLSNLQPMLPILEAVVQSQRPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMMEDIAILTNGELITEDLGMKLENVSLKSLGHAKRVTISKENTVIVDGSGDKKNIEERVLQIKSHIAETTSDYDKEKLQERLAKLSGGVAVLK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_RICB8 (60 kDa chaperonin OS=Rickettsia bellii (strain OSU 85-389) GN=groL PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.388e-31
Identity = 78/195 (40.00%), Postives = 113/195 (57.95%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            ++  VKGM  + G  SPYF T+  K    L+   +L+++ K+SN   +       +   + LL++AEDVE E L  +  +      KV  +KA G  + RKA+MED+AILT G+++T   GM         LG  KRV  + +N VI+ GSG+  +I+ER  Q++S I  +TSD    KL++RLAKLSGG AVLK
Sbjct:  186 DVEVVKGMMFDRGYLSPYFVTNSEKMVAELENPYILLFEKKLSNLQPMLPILEAVVQSQRPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMMEDIAILTNGELITEDLGMKLENVSLKSLGHAKRVTISKENTVIVDGSGDKKNIEERVLQIKSHIAETTSDYDKEKLQERLAKLSGGVAVLK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_RICAH (60 kDa chaperonin OS=Rickettsia akari (strain Hartford) GN=groL PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.388e-31
Identity = 77/195 (39.49%), Postives = 114/195 (58.46%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            ++  VKGM  + G  SPYF T+  K    L+   +L+++ K+SN   +       +   + LL++AEDVE E L  +  +      KV  +KA G  + RKA+MED+AILT G+++T   GM         LG+ KRV  + +N VI+ GSG+  +I++R  Q++S I  +TSD    KL++RLAKLSGG AVLK
Sbjct:  186 DVEVVKGMMFDRGYLSPYFVTNSEKMVAELENPFILLFEKKLSNLQPMLPILEAVVQSQRPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMMEDIAILTKGELITEDLGMKLENVSIKSLGTAKRVTVSKENTVIVDGSGDKKNIEDRVLQIKSQIAETTSDYDKEKLQERLAKLSGGVAVLK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_PSEAE (60 kDa chaperonin OS=Pseudomonas aeruginosa GN=groL PE=1 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 7.388e-31
Identity = 79/196 (40.31%), Postives = 113/196 (57.65%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            NEL+ V+GM+ + G  SPYF    +     LD  L+L+ D KISN   +          G+ LL+VAEDVE E L  +  +      KV  +KA G  + RKA+++D+AILTGG V++   G++        LG+ KRV+   +N  II G+G   DI+ R  Q+R  I+ +TSD    KL++RLAKL+GG AV+K
Sbjct:  185 NELSVVEGMQFDRGYLSPYFVNKPDTMAAELDSPLLLLVDKKISNIREMLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLEGATLEHLGNAKRVVINKENTTIIDGAGVQADIEARVLQIRKQIEETTSDYDREKLQERLAKLAGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_PSEAB (60 kDa chaperonin OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=groL PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.388e-31
Identity = 79/196 (40.31%), Postives = 113/196 (57.65%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            NEL+ V+GM+ + G  SPYF    +     LD  L+L+ D KISN   +          G+ LL+VAEDVE E L  +  +      KV  +KA G  + RKA+++D+AILTGG V++   G++        LG+ KRV+   +N  II G+G   DI+ R  Q+R  I+ +TSD    KL++RLAKL+GG AV+K
Sbjct:  185 NELSVVEGMQFDRGYLSPYFVNKPDTMAAELDSPLLLLVDKKISNIREMLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLEGATLEHLGNAKRVVINKENTTIIDGAGVQADIEARVLQIRKQIEETTSDYDREKLQERLAKLAGGVAVIK 380          
The following BLAST results are available for this feature:
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_RHOP55.657e-3137.9560 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH601_RHOPB5.657e-3137.9560 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH60_ZYMMO7.388e-3138.9760 kDa chaperonin OS=Zymomonas mobilis GN=groL PE=... [more]
CH60_SHEB87.388e-3140.3160 kDa chaperonin OS=Shewanella baltica (strain OS... [more]
CH60_SHEB57.388e-3140.3160 kDa chaperonin OS=Shewanella baltica (strain OS... [more]
CH60_RICBR7.388e-3140.0060 kDa chaperonin OS=Rickettsia bellii (strain RML... [more]
CH60_RICB87.388e-3140.0060 kDa chaperonin OS=Rickettsia bellii (strain OSU... [more]
CH60_RICAH7.388e-3139.4960 kDa chaperonin OS=Rickettsia akari (strain Hart... [more]
CH60_PSEAE7.388e-3140.3160 kDa chaperonin OS=Pseudomonas aeruginosa GN=gro... [more]
CH60_PSEAB7.388e-3140.3160 kDa chaperonin OS=Pseudomonas aeruginosa (strai... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00269 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00269 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623178 ID=BQ623178; Name=BQ623178; organism=Citrus sinensis; type=EST; length=613bp
GGCTATAATGAATTAAATTTTGTTAAGGGAATGAAACTAGAGTGGGGTCT
TAAATCCCCATACTTCTTCACCCATAAGAATAAAAAAGAATGTGTTTTAG
ATGGTGCATTGGTTTTGATCTATGACACGAAAATTTCAAACTCCAATGTT
ATCAGGCAAGCATGTTTGCCATGTATGATGCAGGGACAAAGCTTATTGGT
TGTTGCTGAAGATGTTGAAAACGAAGTTCTAGGAGATATTGCGACAGACT
TCACCTGTACTACTGAAAAGGTTTGTATCATCAAAGCTGCTGGATTGGCA
GAAGATAGGAAGGCCATCATGGAGGACCTTGCAATTCTCACAGGAGGCCA
GGTTTTAACTGGAGGCTCAGGTATGAACTCTACGTATTTTGTGCCTCTAA
AGCTTGGCTCATGCAAAAGGGTTATAGCAACAATGGATAATGTTGTTATC
ATTGGTGGGTCTGGTGAATTGGTAGACATTCAAGAAAGATGTGAACAGCT
GAGATCTACAATAAAATTGAGCACTTCGGACAAGTTGAAAGATCGCCTTG
CAAAACTTTCTGGTGGATATGCCGTTTTGAAGGGTTGTGGACATGGGTAA
AGCTGAAGTGCGT
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