BQ623178

Overview
NameBQ623178
Unique NameBQ623178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_BACFR (60 kDa chaperonin OS=Bacteroides fragilis GN=groL PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.044e-33
Identity = 75/193 (38.86%), Postives = 115/193 (59.59%), Query Frame = 1
Query:   13 LNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVL 579
            +  V+GM+ + G  S YF T+  K EC ++   +LIYD KISN         P +  G+ LLV+AEDV++E L  +  +   +  K+C +KA G  + RK ++ED+A+LTGG V++   G+         LG+  +V  + DN  I+ G+G   +I+ERC+Q+++ I  + SD    KL++RLAKLSGG AVL
Sbjct:  187 IGVVEGMQFDRGYLSAYFVTNTEKMECEMEKPYILIYDKKISNLKDFLPILEPAVQSGRPLLVIAEDVDSEALTTLVVNRLRSQLKICAVKAPGFGDRRKEMLEDIAVLTGGVVISEEKGLKLEQATIEMLGTADKVTVSKDNTTIVNGAGAKENIKERCDQIKAQIAATKSDYDREKLQERLAKLSGGVAVL 379          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_BACFN (60 kDa chaperonin OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=groL PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.044e-33
Identity = 75/193 (38.86%), Postives = 115/193 (59.59%), Query Frame = 1
Query:   13 LNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVL 579
            +  V+GM+ + G  S YF T+  K EC ++   +LIYD KISN         P +  G+ LLV+AEDV++E L  +  +   +  K+C +KA G  + RK ++ED+A+LTGG V++   G+         LG+  +V  + DN  I+ G+G   +I+ERC+Q+++ I  + SD    KL++RLAKLSGG AVL
Sbjct:  187 IGVVEGMQFDRGYLSAYFVTNTEKMECEMEKPYILIYDKKISNLKDFLPILEPAVQSGRPLLVIAEDVDSEALTTLVVNRLRSQLKICAVKAPGFGDRRKEMLEDIAVLTGGVVISEEKGLKLEQATIEMLGTADKVTVSKDNTTIVNGAGAKENIKERCDQIKAQIAATKSDYDREKLQERLAKLSGGVAVL 379          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH601_BURCH (60 kDa chaperonin 1 OS=Burkholderia cenocepacia (strain HI2424) GN=groL1 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.044e-33
Identity = 78/196 (39.80%), Postives = 119/196 (60.71%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            +EL+ V+GM+ + G  SPYF  + +K+  VLD   VL++D K+SN   +          G+ LL++AEDVE E L  +  +      K   +KA G  + RKA++ED+AILTGGQV+   +G+        +LG  KR+    +N  II G+GE V+I+ R +Q+R+ I+ +TSD    KL++R+AKL+GG AV+K
Sbjct:  185 DELDVVEGMQFDRGYLSPYFINNPDKQVAVLDNPFVLLHDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVVAEETGLTLEKATLAELGQAKRIEVGKENTTIIDGAGEAVNIEARVKQVRAQIEEATSDYDREKLQERVAKLAGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH601_BURCA (60 kDa chaperonin 1 OS=Burkholderia cenocepacia (strain AU 1054) GN=groL1 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.044e-33
Identity = 78/196 (39.80%), Postives = 119/196 (60.71%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            +EL+ V+GM+ + G  SPYF  + +K+  VLD   VL++D K+SN   +          G+ LL++AEDVE E L  +  +      K   +KA G  + RKA++ED+AILTGGQV+   +G+        +LG  KR+    +N  II G+GE V+I+ R +Q+R+ I+ +TSD    KL++R+AKL+GG AV+K
Sbjct:  185 DELDVVEGMQFDRGYLSPYFINNPDKQVAVLDNPFVLLHDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVVAEETGLTLEKATLAELGQAKRIEVGKENTTIIDGAGEAVNIEARVKQVRAQIEEATSDYDREKLQERVAKLAGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_POLSJ (60 kDa chaperonin OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=groL PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.894e-33
Identity = 78/196 (39.80%), Postives = 117/196 (59.69%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            +EL+ V+GM+ + G  SPYF  +  K+  +LD   VL+YD KISN   +          G+ LL++AE+VE E L  +  +      KV  +KA G  + RKA++ED+A LTGG+V+    GM+        LG+ KR+    +N +II G+GE  DI+ R +Q+R  I+ +TSD    KL++R+AKL+GG AV+K
Sbjct:  185 SELDVVEGMQFDRGYLSPYFINNPEKQSAILDNPFVLLYDKKISNIRDLLPTLEQVAKAGRPLLIIAEEVEGEALATLVVNTLRGILKVVAVKAPGFGDRRKAMLEDIACLTGGKVIAEEVGMSLEKVTLADLGTAKRIEVGKENTIIIDGAGEAKDIEARVKQVRVQIEEATSDYDREKLQERVAKLAGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_CHLTE (60 kDa chaperonin OS=Chlorobium tepidum GN=groL PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.894e-33
Identity = 80/195 (41.03%), Postives = 111/195 (56.92%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            EL  V+GM+ + G  SPYF T+    E  LD AL+LI+D KISN   +          G+ LL++AED+E E L  +  +    T KV  +KA G  + RKA++ED+AILTGG V++   G          LG   R+    DN  I+ G G+  +I+ R  +++  I+ STSD    KL++RLAKLSGG AVLK
Sbjct:  186 ELKVVEGMQFDRGYLSPYFVTNSETMEAELDEALILIHDKKISNMKELLPILEKAAQSGRPLLIIAEDIEGEALATLVVNKLRGTLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEEKGYKLENATMAYLGQAARITIDKDNTTIVEGKGKQEEIKARINEIKGQIEKSTSDYDTEKLQERLAKLSGGVAVLK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH602_BURS3 (60 kDa chaperonin 2 OS=Burkholderia sp. (strain 383) GN=groL2 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.894e-33
Identity = 77/196 (39.29%), Postives = 118/196 (60.20%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            +EL+ V+GM+ + G  SPYF  +  K+  VLD   VL++D K+SN   +          G+ LL++AED+E E L  +  +      K   +KA G  + RKA++ED+AILTGGQV+   +G+        +LG  KR+    +N  II G+GE V+I+ R +Q+R+ I+ +TSD    KL++R+AKL+GG AV+K
Sbjct:  185 DELDVVEGMQFDRGYLSPYFINNPEKQVAVLDNPFVLLHDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDIEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVGKENTTIIDGAGEAVNIEARVKQVRAQIEEATSDYDREKLQERVAKLAGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_GEOSL (60 kDa chaperonin OS=Geobacter sulfurreducens GN=groL PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.031e-32
Identity = 79/194 (40.72%), Postives = 112/194 (57.73%), Query Frame = 1
Query:   13 LNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            L  V+GM+ + G  SPYF T   + E  L+ A++LI+D KISN   +          G+ LL++AED+E E L  +  +       +C +KA G  + RKA++ED+AILTGGQV++   G          LG  KR+    DN  II G G+  DIQ R +Q+R+ I+ +TSD    KL++RLAKL GG AV+K
Sbjct:  187 LETVEGMQFDRGYLSPYFVTDPERMEASLENAMILIHDKKISNMKDLLPVLEQTAKSGRPLLIIAEDIEGEALATLVVNKLRGVLNICAVKAPGFGDRRKAMLEDIAILTGGQVISEEIGNKLENTTMDMLGRAKRITVDKDNTTIIDGDGKEADIQGRVKQIRAQIEETTSDYDREKLQERLAKLVGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_GEOLS (60 kDa chaperonin OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=groL PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.031e-32
Identity = 78/194 (40.21%), Postives = 111/194 (57.22%), Query Frame = 1
Query:   13 LNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            L  V+GM+ + G  SPYF +   + E  L+ A +LIYD KISN   +          G+ L+++AED+E E L  +  +       VC +KA G  + RKA++ED+AILTGG+V++   G          LG  KR++   DN  II G G   DIQ R +Q+R+ I+ +TSD    KL++RLAKL GG AV+K
Sbjct:  187 LETVEGMQFDRGYLSPYFVSDPERMEATLENATILIYDKKISNMKDMLPVLEQTAKSGRPLMIIAEDIEGEALATLVVNKLRGVLNVCAVKAPGFGDRRKAMLEDIAILTGGKVISEEMGFKLENTTMEMLGRAKRIVVDKDNTTIIDGDGSEADIQGRVKQIRAQIEDTTSDYDREKLQERLAKLVGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_CHLTR (60 kDa chaperonin OS=Chlamydia trachomatis GN=groL PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.031e-32
Identity = 79/194 (40.72%), Postives = 114/194 (58.76%), Query Frame = 1
Query:   13 LNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            L+ V+GM    G  S YF T+   +ECVL+ ALVLIYD KIS               G+ LL++AED+E E L  +  +      +VC +KA G  + RKA++ED+AILTGGQ+++   GM         LG  K+VI + ++  I+ G GE   ++ RCE ++  I+ S+SD    KL++RLAKLSGG AV++
Sbjct:  187 LDIVEGMNFNRGYLSSYFATNPETQECVLEDALVLIYDKKISGIKDFLPVLQQVAESGRPLLIIAEDIEGEALATLVVNRIRGGFRVCAVKAPGFGDRRKAMLEDIAILTGGQLISEELGMKLENANLAMLGKAKKVIVSKEDTTIVEGMGEKEALEARCESIKKQIEDSSSDYDKEKLQERLAKLSGGVAVIR 380          
The following BLAST results are available for this feature:
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BACFR6.044e-3338.8660 kDa chaperonin OS=Bacteroides fragilis GN=groL ... [more]
CH60_BACFN6.044e-3338.8660 kDa chaperonin OS=Bacteroides fragilis (strain ... [more]
CH601_BURCH6.044e-3339.8060 kDa chaperonin 1 OS=Burkholderia cenocepacia (s... [more]
CH601_BURCA6.044e-3339.8060 kDa chaperonin 1 OS=Burkholderia cenocepacia (s... [more]
CH60_POLSJ7.894e-3339.8060 kDa chaperonin OS=Polaromonas sp. (strain JS666... [more]
CH60_CHLTE7.894e-3341.0360 kDa chaperonin OS=Chlorobium tepidum GN=groL PE... [more]
CH602_BURS37.894e-3339.2960 kDa chaperonin 2 OS=Burkholderia sp. (strain 38... [more]
CH60_GEOSL1.031e-3240.7260 kDa chaperonin OS=Geobacter sulfurreducens GN=g... [more]
CH60_GEOLS1.031e-3240.2160 kDa chaperonin OS=Geobacter lovleyi (strain ATC... [more]
CH60_CHLTR1.031e-3240.7260 kDa chaperonin OS=Chlamydia trachomatis GN=groL... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00269 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00269 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623178 ID=BQ623178; Name=BQ623178; organism=Citrus sinensis; type=EST; length=613bp
GGCTATAATGAATTAAATTTTGTTAAGGGAATGAAACTAGAGTGGGGTCT
TAAATCCCCATACTTCTTCACCCATAAGAATAAAAAAGAATGTGTTTTAG
ATGGTGCATTGGTTTTGATCTATGACACGAAAATTTCAAACTCCAATGTT
ATCAGGCAAGCATGTTTGCCATGTATGATGCAGGGACAAAGCTTATTGGT
TGTTGCTGAAGATGTTGAAAACGAAGTTCTAGGAGATATTGCGACAGACT
TCACCTGTACTACTGAAAAGGTTTGTATCATCAAAGCTGCTGGATTGGCA
GAAGATAGGAAGGCCATCATGGAGGACCTTGCAATTCTCACAGGAGGCCA
GGTTTTAACTGGAGGCTCAGGTATGAACTCTACGTATTTTGTGCCTCTAA
AGCTTGGCTCATGCAAAAGGGTTATAGCAACAATGGATAATGTTGTTATC
ATTGGTGGGTCTGGTGAATTGGTAGACATTCAAGAAAGATGTGAACAGCT
GAGATCTACAATAAAATTGAGCACTTCGGACAAGTTGAAAGATCGCCTTG
CAAAACTTTCTGGTGGATATGCCGTTTTGAAGGGTTGTGGACATGGGTAA
AGCTGAAGTGCGT
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