BQ623178

Overview
NameBQ623178
Unique NameBQ623178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_PROVI (60 kDa chaperonin OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=groL PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.346e-32
Identity = 81/194 (41.75%), Postives = 109/194 (56.19%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVL 579
            EL  V+GM+ + G  SPYF T+    E  LD AL+LIYD KISN   +          G+ LL++AED+E E L  +  +    T KVC +KA G  + RKA+++D+AILTGG V++   G          LG   RV    DN  I+ G G   +I+ R  +++  I  STSD    KL++RLAKLSGG AVL
Sbjct:  186 ELKVVEGMQFDRGYLSPYFVTNSESMEAELDDALILIYDKKISNMKELLPILEKGAQSGRPLLIIAEDIEGEALATLVVNKLRGTLKVCAVKAPGFGDRRKAMLDDIAILTGGTVISEEKGYKLENATINYLGQAARVSLDKDNTTIVEGKGTQEEIKARINEIKGQIDKSTSDYDTEKLQERLAKLSGGVAVL 379          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_METPP (60 kDa chaperonin OS=Methylibium petroleiphilum (strain PM1) GN=groL PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.346e-32
Identity = 80/196 (40.82%), Postives = 114/196 (58.16%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            NEL+ V+GM+ + G  SPYF  +  K+  VLD   VL+YD KISN   +          G+ LL++AE+VE E L  +  +      KV  +KA G  + RKA++ED+AILTGG+V+    G+         LG  KRV    +N  II G+G   DI+ R +Q+R  I+ +TSD    KL++R+AKL+GG AV+K
Sbjct:  185 NELDVVEGMQFDRGYLSPYFINNPEKQSAVLDNPFVLLYDKKISNIRDLLPTLEQVAKSGRPLLIIAEEVEGEALATLVVNTIRGILKVVAVKAPGFGDRRKAMLEDIAILTGGKVIAEEVGLTLEKVTLADLGQAKRVEVGKENTTIIDGAGAAGDIEARVKQVRVQIEEATSDYDREKLQERVAKLAGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_CHLTB (60 kDa chaperonin OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=groL PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.346e-32
Identity = 79/194 (40.72%), Postives = 114/194 (58.76%), Query Frame = 1
Query:   13 LNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            L+ V+GM    G  S YF T+   +ECVL+ ALVLIYD KIS               G+ LL++AED+E E L  +  +      +VC +KA G  + RKA++ED+AILTGGQ+++   GM         LG  K+VI + ++  I+ G GE   ++ RCE ++  I+ S+SD    KL++RLAKLSGG AV++
Sbjct:  187 LDVVEGMNFNRGYLSSYFATNPETQECVLEDALVLIYDKKISGIKDFLPVLQQVAESGRPLLIIAEDIEGEALATLVVNRIRGGFRVCAVKAPGFGDRRKAMLEDIAILTGGQLISEELGMKLENANLAMLGKAKKVIVSKEDTTIVEGMGEKEALEARCESIKKQIEDSSSDYDKEKLQERLAKLSGGVAVIR 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_CHLT2 (60 kDa chaperonin OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=groL PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.346e-32
Identity = 79/194 (40.72%), Postives = 114/194 (58.76%), Query Frame = 1
Query:   13 LNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            L+ V+GM    G  S YF T+   +ECVL+ ALVLIYD KIS               G+ LL++AED+E E L  +  +      +VC +KA G  + RKA++ED+AILTGGQ+++   GM         LG  K+VI + ++  I+ G GE   ++ RCE ++  I+ S+SD    KL++RLAKLSGG AV++
Sbjct:  187 LDVVEGMNFNRGYLSSYFATNPETQECVLEDALVLIYDKKISGIKDFLPVLQQVAESGRPLLIIAEDIEGEALATLVVNRIRGGFRVCAVKAPGFGDRRKAMLEDIAILTGGQLISEELGMKLENANLAMLGKAKKVIVSKEDTTIVEGMGEKEALEARCESIKKQIEDSSSDYDKEKLQERLAKLSGGVAVIR 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_BURPP (60 kDa chaperonin OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=groL PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.346e-32
Identity = 77/196 (39.29%), Postives = 118/196 (60.20%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            +EL+ V+GM+ + G  SPYF  + +K+  VLD   VL++D K+SN   +          G+ LL++AEDVE E L  +  +      K   +KA G  + RKA++ED+AILTGGQV+   +G+        +LG  KR+    +N  II G+GE  +I+ R +Q+R+ I+ +TSD    KL++R+AKL+GG AV+K
Sbjct:  185 DELDVVEGMQFDRGYLSPYFINNPDKQVAVLDNPFVLLHDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVGKENTTIIDGAGEAANIEARVKQVRTQIEEATSDYDREKLQERVAKLAGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH601_CHRVO (60 kDa chaperonin 1 OS=Chromobacterium violaceum GN=groL1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.346e-32
Identity = 82/196 (41.84%), Postives = 114/196 (58.16%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            NEL  V+GM+ + G  SPYF T   K+  VL+  LVL+YD KISN   +          G+ LL+VAEDVE E L  +  +      KV  +KA G  + RKA++ED+AILTGG V+   +G+        +LGS KRV    +N  II G+G+   I  R + +R+ I  +TSD    KL++R+AKLSGG AV++
Sbjct:  185 NELAVVEGMQFDRGYLSPYFITDPEKQTAVLEDPLVLLYDKKISNIRDLLPVLEQVAKAGKPLLIVAEDVEGEALATLVVNSMRGILKVAAVKAPGFGDRRKAMLEDIAILTGGTVIAEETGLTLEKAGLAELGSAKRVEIGKENTTIIDGAGDKAKIDARVQAIRAQIDAATSDYDREKLQERVAKLSGGVAVIR 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_THISH (60 kDa chaperonin OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=groL PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.759e-32
Identity = 78/196 (39.80%), Postives = 118/196 (60.20%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            NEL+ V+GM+ + G  SPYF  ++      LD   VL+YD KISN   +          G+ LL++AED+E E L  +  +      KV  +KA G  + RKA+++D+AILTGGQV++   G++        LG  KR++ T +N  II G+G+  +I+ R EQ+R+ I+ +TSD    KL++R+AKL+GG AV+K
Sbjct:  185 NELDVVEGMQFDRGYLSPYFVNNQQNMSAELDDCFVLLYDKKISNIRDLLPVLEGVAKAGKPLLIIAEDIEGEALATLVVNTIRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGQVISEEVGLSLEKASLDDLGQAKRIVVTKENSTIIDGAGKPDEIKGRVEQIRAQIEDATSDYDKEKLQERVAKLAGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_CHLTA (60 kDa chaperonin OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=groL PE=2 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 1.759e-32
Identity = 79/194 (40.72%), Postives = 114/194 (58.76%), Query Frame = 1
Query:   13 LNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            L+ V+GM    G  S YF T+   +ECVL+ ALVLIYD KIS               G+ LL++AED+E E L  +  +      +VC +KA G  + RKA++ED+AILTGGQ+++   GM         LG  K+VI + ++  I+ G GE   ++ RCE ++  I+ S+SD    KL++RLAKLSGG AV++
Sbjct:  187 LDVVEGMNFNRGYLSSYFATNPETQECVLEDALVLIYDKKISGIKDFLPILQQVAESGRPLLIIAEDIEGEALATLVVNRIRGGFRVCAVKAPGFGDRRKAMLEDIAILTGGQLISEELGMKLENANLAMLGKAKKVIVSKEDTTIVEGMGEKEALEARCESIKKQIEDSSSDYDKEKLQERLAKLSGGVAVIR 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_BURVI (60 kDa chaperonin OS=Burkholderia vietnamiensis GN=groL PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.759e-32
Identity = 77/196 (39.29%), Postives = 117/196 (59.69%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            +EL+ V+GM+ + G  SPYF  + +K+  VLD   VL++D K+SN   +          G+ LL++AEDVE E L  +  +      K   +KA G  + RKA++ED+AILTGGQV+   +G+        +LG  KR+    +N  II G+GE   I+ R +Q+R+ I+ +TSD    KL++R+AKL+GG AV+K
Sbjct:  185 DELDVVEGMQFDRGYLSPYFINNPDKQVAVLDNPFVLLHDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVGKENTTIIDGAGEAASIEARVKQVRTQIEEATSDYDREKLQERVAKLAGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_BURP8 (60 kDa chaperonin OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=groL PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.759e-32
Identity = 77/196 (39.29%), Postives = 118/196 (60.20%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            +EL+ V+GM+ + G  SPYF  + +K+  VLD   VL++D K+SN   +          G+ LL++AEDVE E L  +  +      K   +KA G  + RKA++ED+AILTGGQV+   +G+        +LG  KR+    +N  II G+GE  +I+ R +Q+R+ I+ +TSD    KL++R+AKL+GG AV+K
Sbjct:  185 DELDVVEGMQFDRGYLSPYFINNPDKQVAVLDNPFVLLHDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVIAEETGLTLEKATLQELGQAKRIEVGKENTTIIDGAGEAANIEARVKQVRTQIEEATSDYDREKLQERVAKLAGGVAVIK 380          
The following BLAST results are available for this feature:
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_PROVI1.346e-3241.7560 kDa chaperonin OS=Prosthecochloris vibrioformis... [more]
CH60_METPP1.346e-3240.8260 kDa chaperonin OS=Methylibium petroleiphilum (s... [more]
CH60_CHLTB1.346e-3240.7260 kDa chaperonin OS=Chlamydia trachomatis (strain... [more]
CH60_CHLT21.346e-3240.7260 kDa chaperonin OS=Chlamydia trachomatis (strain... [more]
CH60_BURPP1.346e-3239.2960 kDa chaperonin OS=Burkholderia phytofirmans (st... [more]
CH601_CHRVO1.346e-3241.8460 kDa chaperonin 1 OS=Chromobacterium violaceum G... [more]
CH60_THISH1.759e-3239.8060 kDa chaperonin OS=Thioalkalivibrio sp. (strain ... [more]
CH60_CHLTA1.759e-3240.7260 kDa chaperonin OS=Chlamydia trachomatis (strain... [more]
CH60_BURVI1.759e-3239.2960 kDa chaperonin OS=Burkholderia vietnamiensis GN... [more]
CH60_BURP81.759e-3239.2960 kDa chaperonin OS=Burkholderia phymatum (strain... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00269 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00269 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623178 ID=BQ623178; Name=BQ623178; organism=Citrus sinensis; type=EST; length=613bp
GGCTATAATGAATTAAATTTTGTTAAGGGAATGAAACTAGAGTGGGGTCT
TAAATCCCCATACTTCTTCACCCATAAGAATAAAAAAGAATGTGTTTTAG
ATGGTGCATTGGTTTTGATCTATGACACGAAAATTTCAAACTCCAATGTT
ATCAGGCAAGCATGTTTGCCATGTATGATGCAGGGACAAAGCTTATTGGT
TGTTGCTGAAGATGTTGAAAACGAAGTTCTAGGAGATATTGCGACAGACT
TCACCTGTACTACTGAAAAGGTTTGTATCATCAAAGCTGCTGGATTGGCA
GAAGATAGGAAGGCCATCATGGAGGACCTTGCAATTCTCACAGGAGGCCA
GGTTTTAACTGGAGGCTCAGGTATGAACTCTACGTATTTTGTGCCTCTAA
AGCTTGGCTCATGCAAAAGGGTTATAGCAACAATGGATAATGTTGTTATC
ATTGGTGGGTCTGGTGAATTGGTAGACATTCAAGAAAGATGTGAACAGCT
GAGATCTACAATAAAATTGAGCACTTCGGACAAGTTGAAAGATCGCCTTG
CAAAACTTTCTGGTGGATATGCCGTTTTGAAGGGTTGTGGACATGGGTAA
AGCTGAAGTGCGT
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