BQ623178

Overview
NameBQ623178
Unique NameBQ623178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10513 contig Csv1_Contig10513:551..1163. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_FRATW (60 kDa chaperonin OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=groL PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.541e-28
Identity = 75/196 (38.27%), Postives = 110/196 (56.12%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            +EL+ V+GM+ + G  SPYF T++      L+   +LI D KISN   +          G++LL++AEDVE+E L  +  +      KVC +KA G  + RKA++ED+A LTG   ++    M         LG+  RV+ T DN  II G+GE   I +R   +++ I  + SD    KL++RLAKLSGG AV+K
Sbjct:  185 DELDVVEGMQFDRGYLSPYFATNQENMTTDLENPYILIVDKKISNIRDLLPILEGVSKSGRALLIIAEDVESEALATLVVNNMRGVVKVCAVKAPGFGDRRKAMLEDIATLTGATFVSEDLSMKLEETNMEHLGTASRVLVTKDNTTIIDGAGEKEAIAKRINVIKANIAEANSDYDREKLQERLAKLSGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_ERWAP (60 kDa chaperonin (Fragment) OS=Erwinia aphidicola GN=groL PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.541e-28
Identity = 74/196 (37.76%), Postives = 108/196 (55.10%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            +EL+ V+GM+ + G  SPYF          L+   +L+ D KISN   +          G+ LL++AEDVE E L  +  +      KV  +KA G  + RKA+++D+A+LTGG V++   GM         +G  KRV+   D  +II G+GE   I  R  Q+R  I+ +TSD    KL++R+AKL+GG AVLK
Sbjct:  185 DELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIAVLTGGTVISEEIGMELEKAGLEDMGQAKRVVINKDTTIIIDGTGEEATINGRVTQIRQQIEEATSDYDREKLQERVAKLAGGVAVLK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_ENTGE (60 kDa chaperonin (Fragment) OS=Enterobacter gergoviae GN=groL PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.541e-28
Identity = 76/196 (38.78%), Postives = 106/196 (54.08%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            +EL+ V+GM+ + G  SPYF          LD   +L+ D KISN   +          G+ LL++AEDVE E L  +  +      KV  +KA G  + RKA+++D+A LT G V++   GM         LG  KRV+   D   II G GE V IQ R  Q+R  I+ +TSD    KL++R+AKL+GG AV+K
Sbjct:  185 DELDVVEGMQFDRGYLSPYFINKPETGAVELDSPFILLADKKISNIRELLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTAGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEVAIQGRVTQIRQQIEEATSDYDREKLQERVAKLAGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_COPPD (60 kDa chaperonin OS=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) GN=groL PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.541e-28
Identity = 70/195 (35.90%), Postives = 111/195 (56.92%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLK 582
            EL FV+GM+ + G  SPYF T   + E VL+  L++I D KISN           +  G+S L++A+DVE E L  +  +    T     +KA G  + RK +++D+AI+TGGQV++   G++     P   G  + V    ++  I+GG G   +I++R  Q+R  ++ + S    +KL++RLAKL+GG AV+K
Sbjct:  185 ELEFVEGMQFDRGYVSPYFVTDPERMETVLEDPLIVITDKKISNVQEFLPLLEKIVQYGRSFLLIADDVEGEALATLVVNKLRGTFNCVAVKAPGFGDRRKEMLQDIAIVTGGQVISEELGVSFESVTPDMFGHARSVKVDKESTTIVGGKGSSEEIEKRIAQIRKQLETTESEYEKEKLQERLAKLAGGVAVIK 379          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_BEUC1 (60 kDa chaperonin OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=groL PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.541e-28
Identity = 70/195 (35.90%), Postives = 116/195 (59.49%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            EL   +GM+ + G  S YF T + ++E VL+ A +L+ ++KIS+   +       +  G+SL+++AED+E E L  +  +    T K   +KA G  + RKA+++D+AILTGGQV++   G++        LG  ++++ T D   I+ G+G+   +  R  Q+R+ I+ S SD    KL++RLAKL+GG AV+K
Sbjct:  184 ELELTEGMRFDKGYLSAYFVTDQERQEAVLEDAYILLVESKISSVKDLLPLLEKVIQGGKSLVIIAEDIEGEALATLVVNKLKGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISETVGLSLENADLDALGQARKIVVTKDETTIVEGAGDPDQLAGRVAQIRAEIENSDSDYDREKLQERLAKLAGGVAVIK 378          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_BARBK (60 kDa chaperonin OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=groL PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.541e-28
Identity = 70/195 (35.90%), Postives = 112/195 (57.44%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            EL  V+GM+ + G  SPYF T+  K    LD   +LI++ K+SN   +       +  G+ LL++AEDVE E L  +  +      K+  +KA G  + RKA++ED+A+LT GQV++   G+         LG  K+V  + +   I+ G+G+  +I  R  Q+++ I+ +TSD    KL++RLAKL+GG AV++
Sbjct:  186 ELEVVEGMQFDRGYLSPYFVTNSEKMMVDLDDPYILIHEKKLSNLQSLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAVLTSGQVISEDVGIKLENVTLEMLGRAKKVHVSKETTTIVDGAGQKSEINARVSQIKAQIEETTSDYDREKLQERLAKLAGGVAVIR 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH605_RHILO (60 kDa chaperonin 5 OS=Rhizobium loti GN=groL5 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.541e-28
Identity = 70/195 (35.90%), Postives = 115/195 (58.97%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            EL  V+GM+ + G  SPYF T+ +K    L+ A +L+++ K+SN   +       +   + L++++EDVE E L  +  +      K+  +KA G  + RKA++ED+AILTGGQV++   G+         LG  K+V  + +N  I+ G+G+  +IQ R  Q++  I+ +TSD    KL++RLAKL+GG AV++
Sbjct:  186 ELEVVEGMQFDRGYLSPYFVTNADKMVADLEDAYILLHEKKLSNLQAMLPILEAVVQTSKPLVIISEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTGGQVISEDLGIKLENVGLNMLGRAKKVSISKENTTIVDGAGKKAEIQGRVAQIKQQIEETTSDYDKEKLQERLAKLAGGVAVIR 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH602_STRCO (60 kDa chaperonin 2 OS=Streptomyces coelicolor GN=groL2 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.541e-28
Identity = 74/195 (37.95%), Postives = 109/195 (55.90%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            EL   +GM+ + G  S YF T   + E  LD   +LI ++KI N   +       M  G+ LL++AEDVE E L  +  +    T K   +KA G  + RKA++ D+AILTGG+V++   G+         LGS ++V+ T D   I+ G+G    +Q R  Q+R+ I+ S SD    KL++RLAKL+GG AV+K
Sbjct:  184 ELELTEGMRFDKGYISAYFATDMERMEASLDDPYILIANSKIGNVKDLLPLLEKVMQSGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLGDIAILTGGEVISEEVGLKLENATLDLLGSARKVVITKDETTIVDGAGSADQVQGRVNQIRAEIENSDSDYDREKLQERLAKLAGGVAVIK 378          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH602_RHIME (60 kDa chaperonin 2 OS=Rhizobium meliloti GN=groL2 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.541e-28
Identity = 70/195 (35.90%), Postives = 113/195 (57.95%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            EL  V+GM+ + G  SPYF T++ K    L+ A +L+++ K+SN   +       +  G+ LL++AEDVE E L  +  +      K+  +KA G  + RK+++ED+AILTGG V++   G+         LG  KR++   +   I+ G+G   DI  R  Q+++ I+ +TSD    KL++RLAKL+GG AV++
Sbjct:  186 ELEVVEGMEFDRGYLSPYFITNQEKMRVELEDAYILLHEKKLSNLQAMIPILESVIQSGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKSMLEDIAILTGGTVISEELGIKLENTTMDTLGRAKRIMVDKETTTIVDGAGSKEDIGGRVAQIKAQIEDTTSDYDREKLQERLAKLAGGVAVIR 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH602_RHIEC (60 kDa chaperonin 2 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL2 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.541e-28
Identity = 71/195 (36.41%), Postives = 112/195 (57.44%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            EL  V+GM+ + G  SPYF T+++K    L+   +LI++ K+SN   +       +  G+ LL++AEDVE E L  +  +      K+  +KA G  + RKA++ED+AILT G V++   G+         LG  K+V    +N  II G+G   ++  R  Q+R+ I+ +TSD    KL++RLAKL+GG AV++
Sbjct:  186 ELEVVEGMQFDRGYLSPYFVTNQDKMRVELEDPYILIHEKKLSNLQSMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTAGTVISEDLGIKLENVTLNMLGRAKKVAIEKENTTIIDGAGSKAELDGRTAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIR 380          
The following BLAST results are available for this feature:
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_FRATW1.541e-2838.2760 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_ERWAP1.541e-2837.7660 kDa chaperonin (Fragment) OS=Erwinia aphidicola... [more]
CH60_ENTGE1.541e-2838.7860 kDa chaperonin (Fragment) OS=Enterobacter gergo... [more]
CH60_COPPD1.541e-2835.9060 kDa chaperonin OS=Coprothermobacter proteolytic... [more]
CH60_BEUC11.541e-2835.9060 kDa chaperonin OS=Beutenbergia cavernae (strain... [more]
CH60_BARBK1.541e-2835.9060 kDa chaperonin OS=Bartonella bacilliformis (str... [more]
CH605_RHILO1.541e-2835.9060 kDa chaperonin 5 OS=Rhizobium loti GN=groL5 PE=... [more]
CH602_STRCO1.541e-2837.9560 kDa chaperonin 2 OS=Streptomyces coelicolor GN=... [more]
CH602_RHIME1.541e-2835.9060 kDa chaperonin 2 OS=Rhizobium meliloti GN=groL2... [more]
CH602_RHIEC1.541e-2836.4160 kDa chaperonin 2 OS=Rhizobium etli (strain CFN ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00269 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00269 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623178 ID=BQ623178; Name=BQ623178; organism=Citrus sinensis; type=EST; length=613bp
GGCTATAATGAATTAAATTTTGTTAAGGGAATGAAACTAGAGTGGGGTCT
TAAATCCCCATACTTCTTCACCCATAAGAATAAAAAAGAATGTGTTTTAG
ATGGTGCATTGGTTTTGATCTATGACACGAAAATTTCAAACTCCAATGTT
ATCAGGCAAGCATGTTTGCCATGTATGATGCAGGGACAAAGCTTATTGGT
TGTTGCTGAAGATGTTGAAAACGAAGTTCTAGGAGATATTGCGACAGACT
TCACCTGTACTACTGAAAAGGTTTGTATCATCAAAGCTGCTGGATTGGCA
GAAGATAGGAAGGCCATCATGGAGGACCTTGCAATTCTCACAGGAGGCCA
GGTTTTAACTGGAGGCTCAGGTATGAACTCTACGTATTTTGTGCCTCTAA
AGCTTGGCTCATGCAAAAGGGTTATAGCAACAATGGATAATGTTGTTATC
ATTGGTGGGTCTGGTGAATTGGTAGACATTCAAGAAAGATGTGAACAGCT
GAGATCTACAATAAAATTGAGCACTTCGGACAAGTTGAAAGATCGCCTTG
CAAAACTTTCTGGTGGATATGCCGTTTTGAAGGGTTGTGGACATGGGTAA
AGCTGAAGTGCGT
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