BQ623178

Overview
NameBQ623178
Unique NameBQ623178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10513 contig Csv1_Contig10513:551..1163. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_BURCE (60 kDa chaperonin OS=Burkholderia cepacia GN=groL PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.759e-32
Identity = 77/196 (39.29%), Postives = 117/196 (59.69%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            +EL+ V+GM+ + G  SPYF  + +K+  VLD   VL++D K+SN   +          G+ LL++AEDVE E L  +  +      K   +KA G  + RKA++ED+AILTGGQV+   +G+        +LG  KR+    +N  II G+GE   I+ R +Q+R+ I+ +TSD    KL++R+AKL+GG AV+K
Sbjct:  185 DELDVVEGMQFDRGYLSPYFINNPDKQVAVLDNPFVLLHDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVGKENTTIIDGAGEAASIEARVKQVRAQIEEATSDYDREKLQERVAKLAGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH601_RHORT (60 kDa chaperonin 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=groL1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.759e-32
Identity = 79/195 (40.51%), Postives = 115/195 (58.97%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            EL+ V+GM+ + G  SPYF T+  K    L+   +LI++ K+S    +       +  G+ LL++AEDVE E L  +  +      KV  +KA G  + RKA++ED+AILTGGQV++   G+         LG+ K V  T DN  I+ G+G   DI  RC Q+R+TI+ +TSD    KL++RLAKLSGG AV++
Sbjct:  186 ELDVVEGMQFDRGYLSPYFVTNAEKMVADLENPYILIHEKKLSGLQPLLPVLEAVVQSGRPLLIIAEDVEGEALATLVVNRLRGGLKVASVKAPGFGDRRKAMLEDIAILTGGQVISEDLGIKLETVTLDMLGTAKTVTITKDNTTIVDGAGVKADIDARCAQIRATIEDTTSDYDREKLQERLAKLSGGVAVIR 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH601_BURVG (60 kDa chaperonin 1 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=groL1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.759e-32
Identity = 77/196 (39.29%), Postives = 117/196 (59.69%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            +EL+ V+GM+ + G  SPYF  + +K+  VLD   VL++D K+SN   +          G+ LL++AEDVE E L  +  +      K   +KA G  + RKA++ED+AILTGGQV+   +G+        +LG  KR+    +N  II G+GE   I+ R +Q+R+ I+ +TSD    KL++R+AKL+GG AV+K
Sbjct:  185 DELDVVEGMQFDRGYLSPYFINNPDKQVAVLDNPFVLLHDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVGKENTTIIDGAGEAASIEARVKQVRTQIEEATSDYDREKLQERVAKLAGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_METI4 (60 kDa chaperonin OS=Methylacidiphilum infernorum (isolate V4) GN=groL PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.297e-32
Identity = 81/193 (41.97%), Postives = 114/193 (59.07%), Query Frame = 1
Query:   13 LNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVL 579
            L  V+GM+ + G  SPYF T+  + E VL+ A +LI++ KISN   +          G+ LL++AEDVE E L  +  +    T +VC +KA G  + RKA++ED+AILTGG+ LT   G+         LG  KR+I   +N  II GSG   +IQ R  Q+R  I+ +TSD    KL++RLAKL+GG AV+
Sbjct:  187 LEVVEGMQFDRGYISPYFVTNAEELEAVLENAYILIHEKKISNLKDLLPLLEKIAKAGRPLLIIAEDVEGEALATLVVNKLRGTLQVCAVKAPGFGDRRKAMLEDIAILTGGRCLTEDLGIKLENVQLEDLGRAKRIIVEKENTTIIEGSGSRSEIQGRINQIRRQIEETTSDYDREKLQERLAKLAGGVAVI 379          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH601_SYNAS (60 kDa chaperonin 1 OS=Syntrophus aciditrophicus (strain SB) GN=groL1 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.297e-32
Identity = 80/198 (40.40%), Postives = 119/198 (60.10%), Query Frame = 1
Query:   13 LNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQ----GQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            L  V+GM+ + G  SPYF T   K E V++   +L+YD KIS    + Q  +P + Q    G+ +L+V+ED+E E L  +  +    T K   +KA G  + RKA++ED+AILTGG+V++   G+         LG+CKR+  T DN  I+ G+G   DI+ R +Q+R+ I+ +TSD    KL++RLAKL GG AV+K
Sbjct:  187 LEIVEGMQFDRGYVSPYFVTDPEKMEVVMEDPYILLYDKKIS----VMQDLVPILEQIARSGRPMLIVSEDLEGEALATLVVNNIRGTLKCAAVKAPGFGDRRKAMLEDIAILTGGKVVSEELGIKLDSITLTDLGTCKRLHITKDNTTIVDGAGSQADIEGRVKQIRTQIEETTSDYDREKLQERLAKLVGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH601_AZOSB (60 kDa chaperonin 1 OS=Azoarcus sp. (strain BH72) GN=groL1 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.297e-32
Identity = 77/196 (39.29%), Postives = 116/196 (59.18%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            NEL+ V+GM+ + G  SPYF  + +K+  +L+   VL++D KISN   +          G+ LL++AEDV+ E L  +  +      K C +KA G  + RKA++ED+AILTGGQV+    G+         LG  KR+    +N +II G+GE   I+ R +Q+R  I+ +TSD    KL++R+AKL+GG AV+K
Sbjct:  185 NELDVVEGMQFDRGYLSPYFINNPDKQVAILENPFVLLFDKKISNIRDLLPVLEQVAKAGRPLLIIAEDVDGEALATLVVNNIRGILKTCAVKAPGFGDRRKAMLEDIAILTGGQVIAEEVGLTLEKATLQDLGQAKRIEIGKENTIIIDGAGEASRIEARVKQIRVQIEEATSDYDREKLQERVAKLAGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_PELCD (60 kDa chaperonin OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=groL PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.000e-32
Identity = 79/194 (40.72%), Postives = 116/194 (59.79%), Query Frame = 1
Query:   13 LNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            L  V+GM+ + G  SPYF T   + E V++ A++LI+D KISN   +         QG+ LL++AED+E E L  +  +    T  V  +KA G  + RKA++ED+AILTGG+V++   G          LG+ KR++   +N  II G+G  VDIQ R +Q+R+ I+ + SD    KL++RLAKL GG AV+K
Sbjct:  187 LETVEGMQFDRGYLSPYFVTDAERMEAVMEDAMILIHDKKISNMRDMINILEAVAKQGRPLLIIAEDIEGEALATLVVNRLRGTLNVAAVKAPGFGDRRKAMLEDIAILTGGKVISEEVGFKLENATIDMLGNAKRIVIDKENSTIIDGAGSEVDIQGRVKQIRAQIEETKSDYDREKLQERLAKLVGGVAVVK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_NITSB (60 kDa chaperonin OS=Nitratiruptor sp. (strain SB155-2) GN=groL PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.000e-32
Identity = 75/197 (38.07%), Postives = 116/197 (58.88%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQS-LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLK 582
            +EL  V+GM+ + G  SPYF T   K E VL+ A +L+YD KISN   +       +  G   LL++AED+E E L  +  +    T  VC +KA G  + RKA+++D+AILTGGQV++   G          LG   R++   +N  I+GG G+   ++ R +++++ I+ +TS    +KL++RLAKL+GG AV+K
Sbjct:  185 DELEVVEGMQFDRGYLSPYFVTDTEKMEAVLENAYILLYDKKISNMKDLLPVLEKVVQTGNKPLLIIAEDIEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLQDIAILTGGQVISEEVGRTLESATLEDLGQADRIVVDKENTTIVGGKGDKAAVEARIKEIKAQIEQTTSEYDKEKLQERLAKLAGGVAVIK 381          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_BACSU (60 kDa chaperonin OS=Bacillus subtilis GN=groL PE=1 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 3.000e-32
Identity = 77/195 (39.49%), Postives = 115/195 (58.97%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLK 582
            EL  V+GM+ + G  SPY  T  +K E VLD   +LI D KI+N   I       + QG+ LL++AEDVE E L  +  +    T     +KA G  + RKA++ED+A+LTGG+V+T   G++       +LG   +V+ T +N  I+ G+GE   I  R  Q+R+ ++ +TS    +KL++RLAKL+GG AV+K
Sbjct:  184 ELEVVEGMQFDRGYASPYMVTDSDKMEAVLDNPYILITDKKITNIQEILPVLEQVVQQGKPLLLIAEDVEGEALATLVVNKLRGTFNAVAVKAPGFGDRRKAMLEDIAVLTGGEVITEDLGLDLKSTQIAQLGRASKVVVTKENTTIVEGAGETDKISARVTQIRAQVEETTSEFDREKLQERLAKLAGGVAVIK 378          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_AQUAE (60 kDa chaperonin OS=Aquifex aeolicus GN=groL PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.000e-32
Identity = 76/194 (39.18%), Postives = 111/194 (57.22%), Query Frame = 1
Query:   13 LNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            L  VKGM+ + G  SPYF T   K ECVL+   +LIY+ KI+N   +       +  G+ LLV+AEDVE E L  +  +      K C +KA G  + RK  + D+A+LTGGQ +T   G+         LG  ++V+   ++  IIGG G+   I+ R EQ++  I+ +TSD    KL++RLAKLSGG A+++
Sbjct:  187 LEVVKGMQFDRGYLSPYFVTDPEKMECVLENPYILIYEKKITNVKELLPILEQVVRSGRPLLVIAEDVEGEALATLVVNHIKGVLKACAVKAPGFGQRRKDYLGDIAVLTGGQAITEDLGIKLESVTLDMLGQAEKVVVDKEHTTIIGGKGDPEQIKARIEQIKRQIQETTSDYDREKLQERLAKLSGGVAIIR 380          
The following BLAST results are available for this feature:
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BURCE1.759e-3239.2960 kDa chaperonin OS=Burkholderia cepacia GN=groL ... [more]
CH601_RHORT1.759e-3240.5160 kDa chaperonin 1 OS=Rhodospirillum rubrum (stra... [more]
CH601_BURVG1.759e-3239.2960 kDa chaperonin 1 OS=Burkholderia vietnamiensis ... [more]
CH60_METI42.297e-3241.9760 kDa chaperonin OS=Methylacidiphilum infernorum ... [more]
CH601_SYNAS2.297e-3240.4060 kDa chaperonin 1 OS=Syntrophus aciditrophicus (... [more]
CH601_AZOSB2.297e-3239.2960 kDa chaperonin 1 OS=Azoarcus sp. (strain BH72) ... [more]
CH60_PELCD3.000e-3240.7260 kDa chaperonin OS=Pelobacter carbinolicus (stra... [more]
CH60_NITSB3.000e-3238.0760 kDa chaperonin OS=Nitratiruptor sp. (strain SB1... [more]
CH60_BACSU3.000e-3239.4960 kDa chaperonin OS=Bacillus subtilis GN=groL PE=... [more]
CH60_AQUAE3.000e-3239.1860 kDa chaperonin OS=Aquifex aeolicus GN=groL PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00269 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00269 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623178 ID=BQ623178; Name=BQ623178; organism=Citrus sinensis; type=EST; length=613bp
GGCTATAATGAATTAAATTTTGTTAAGGGAATGAAACTAGAGTGGGGTCT
TAAATCCCCATACTTCTTCACCCATAAGAATAAAAAAGAATGTGTTTTAG
ATGGTGCATTGGTTTTGATCTATGACACGAAAATTTCAAACTCCAATGTT
ATCAGGCAAGCATGTTTGCCATGTATGATGCAGGGACAAAGCTTATTGGT
TGTTGCTGAAGATGTTGAAAACGAAGTTCTAGGAGATATTGCGACAGACT
TCACCTGTACTACTGAAAAGGTTTGTATCATCAAAGCTGCTGGATTGGCA
GAAGATAGGAAGGCCATCATGGAGGACCTTGCAATTCTCACAGGAGGCCA
GGTTTTAACTGGAGGCTCAGGTATGAACTCTACGTATTTTGTGCCTCTAA
AGCTTGGCTCATGCAAAAGGGTTATAGCAACAATGGATAATGTTGTTATC
ATTGGTGGGTCTGGTGAATTGGTAGACATTCAAGAAAGATGTGAACAGCT
GAGATCTACAATAAAATTGAGCACTTCGGACAAGTTGAAAGATCGCCTTG
CAAAACTTTCTGGTGGATATGCCGTTTTGAAGGGTTGTGGACATGGGTAA
AGCTGAAGTGCGT
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