BQ623178

Overview
NameBQ623178
Unique NameBQ623178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10513 contig Csv1_Contig10513:551..1163. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_BACAH (60 kDa chaperonin OS=Bacillus thuringiensis (strain Al Hakam) GN=groL PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.918e-32
Identity = 78/195 (40.00%), Postives = 114/195 (58.46%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLK 582
            EL+ V+GM+ + G  SPY  T  +K E VLD   +LI D KISN   I       + QG+ LL++AEDVE E L  +  +    T  V  +KA G  + RKA++ED+AILTGG+V+T   G +        LG   +V+ T +N  ++ G G    I+ R  Q+R+ ++ +TS    +KL++RLAKL+GG AV+K
Sbjct:  184 ELDVVEGMQFDRGYASPYMITDSDKMEAVLDNPYILITDKKISNIQEILPVLEQVVQQGKPLLIIAEDVEGEALATLVVNKLRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGEVITEELGRDLKSATVESLGRAGKVVVTKENTTVVEGVGSTEQIEARIGQIRAQLEETTSEFDREKLQERLAKLAGGVAVIK 378          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_VARPS (60 kDa chaperonin OS=Variovorax paradoxus (strain S110) GN=groL PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.117e-32
Identity = 77/196 (39.29%), Postives = 115/196 (58.67%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            +EL+ V+GM+ + G  SPYF  +  K+  +LD   VL++D KISN   +          G+ LL++AE+VE E L  +  +      KV  +KA G  + RKA++ED+AILTGG+V+    G+         LG  KR+    +N +II GSG   DI+ R +Q+R  I+ +TSD    KL++R+AKL+GG AV+K
Sbjct:  185 SELDVVEGMQFDRGYLSPYFINNPEKQSALLDNPFVLLFDKKISNIRDLLPTLEQVAKAGRPLLIIAEEVEGEALATLVVNTIRGILKVVAVKAPGFGDRRKAMLEDIAILTGGKVIAEEVGLTLEKVTLADLGQAKRIEVGKENTIIIDGSGAAADIEARVKQVRVQIEEATSDYDREKLQERVAKLAGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_PROA2 (60 kDa chaperonin OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=groL PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.117e-32
Identity = 77/194 (39.69%), Postives = 109/194 (56.19%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVL 579
            EL  V+GM+ + G  SPYF T+  K +  L+   +LIYD KISN   +          G+ L+++AED+E E L  +  +    T KVC +KA G  + RKA++ED+AILTGG V++   G          LG    +    DN  I+ G G+  DI+ R  +++  I+ STSD    KL++RLAKLSGG AVL
Sbjct:  186 ELTVVEGMQFDRGYLSPYFVTNSEKMDADLEDPYILIYDKKISNMKELLPVLEKTAQSGRPLMIIAEDIEGEALATLVVNKLRGTLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEEKGYKLENATISYLGQAASITVDKDNTTIVDGKGQADDIKARIGEIKGQIEKSTSDYDTEKLQERLAKLSGGVAVL 379          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_AZOSE (60 kDa chaperonin OS=Azoarcus sp. (strain EbN1) GN=groL PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.117e-32
Identity = 76/196 (38.78%), Postives = 117/196 (59.69%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            NEL+ V+GM+ + G  SPYF  + +K+  +L+   +L++D KISN   +          G+ LL+VAEDVE E L  +  +      K C +KA G  + RKA++ED+A+LTGGQV+    G+        +LG   R+    +N +II G+GE   I+ R +Q+R+ I+ +TSD    KL++R+AKL+GG AV+K
Sbjct:  185 NELDVVEGMQFDRGYLSPYFINNPDKQVAILENPFILLFDKKISNIRDLLPVLEQVAKAGRPLLIVAEDVEGEALATLVVNNIRGILKTCSVKAPGFGDRRKAMLEDIAVLTGGQVIAEEVGLTLEKATLAELGQAARIEIGKENTIIIDGAGEGSRIEGRVKQIRAQIEEATSDYDREKLQERVAKLAGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH602_PARUW (60 kDa chaperonin 2 OS=Protochlamydia amoebophila (strain UWE25) GN=groL2 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.117e-32
Identity = 77/194 (39.69%), Postives = 114/194 (58.76%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVL 579
            EL+ VKGMK + G  S YF T+   +EC+L+ A VLIY+ KIS    I       +  G+ LL++AEDVE E L  +  +      KVC +KA G  + RKA+++D+AILTGG++++   G+        +LG  K+ + T D   ++ G+G    I +R  Q++  I+ STSD    KL++RLAKL GG AV+
Sbjct:  186 ELDVVKGMKFDRGYLSAYFMTNSESQECILEDAYVLIYEKKISAIKEIIPLLQAVVETGRPLLIIAEDVEGEALATLVVNRLRAGLKVCAVKAPGFGDRRKAMLQDIAILTGGELISEEIGLKLETTTIEQLGRVKKAVLTKDETTLVEGAGTKAAILDRASQIKRQIEESTSDYDKEKLQERLAKLVGGVAVI 379          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_RHOMR (60 kDa chaperonin OS=Rhodothermus marinus GN=groL PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.683e-32
Identity = 79/194 (40.72%), Postives = 112/194 (57.73%), Query Frame = 1
Query:   13 LNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            L  V+GM+ + G  SPYF T+ +  E VL+ A +LI+D KIS    +       +  G+ LL++AEDVE E L  +  +      KV  +KA G  + RKA++ED+AILTGG V++   G          LG  +R+I   DN  I+GG G+   I+ R  Q+R  I+ +TSD    KL++RLAKL+GG AVLK
Sbjct:  187 LEVVEGMQFDRGYLSPYFVTNPDTMEAVLEDAYILIHDKKISAMKDLLPILEKVVQTGRPLLIIAEDVEGEALATLVVNKLRGVLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEEKGYRLENATLDYLGQAERIIVDKDNTTIVGGKGDPAQIKARANQIRQQIEETTSDYDREKLQERLAKLAGGVAVLK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_PSEPF (60 kDa chaperonin OS=Pseudomonas fluorescens (strain Pf0-1) GN=groL PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.683e-32
Identity = 79/196 (40.31%), Postives = 116/196 (59.18%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            NEL+ V+GM+ + G  SPYF    +     L+GAL+L+ D KISN   +          G+ LL+VAEDVE E L  +  +      KV  +KA G  + RKA+++D+A+LTGG V++   G++        LGS KRV  + +N +I+ G+G   DIQ R  Q+R+ +  ++SD    KL++RLAKLSGG AV+K
Sbjct:  185 NELSVVEGMQFDRGYLSPYFVNKPDTMVAELEGALILLVDKKISNIREMLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAVLTGGTVISEEIGLSLESTTLEHLGSAKRVTLSKENTIIVDGAGNDGDIQARIAQIRAQVAETSSDYDREKLQERLAKLSGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_PSEF5 (60 kDa chaperonin OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=groL PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.683e-32
Identity = 80/196 (40.82%), Postives = 114/196 (58.16%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            NEL+ V+GM+ + G  SPYF    +     LDG L+L+ D KISN   +          G+ LL+VAEDVE E L  +  +      KV  +KA G  + RKA+++D+A+LTGG V++   G++        LG+ KRVI + +N  II G+G   DIQ R  Q+R  +  ++SD    KL++RLAKLSGG AV+K
Sbjct:  185 NELSVVEGMQFDRGYLSPYFINKPDTMVAELDGPLILLVDKKISNIREMLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAVLTGGTVISEEIGLSLESTTLEHLGNAKRVILSKENTTIIDGAGVEADIQARVTQIRQQVADTSSDYDREKLQERLAKLSGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_BACWK (60 kDa chaperonin OS=Bacillus weihenstephanensis (strain KBAB4) GN=groL PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.683e-32
Identity = 77/195 (39.49%), Postives = 114/195 (58.46%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLK 582
            EL+ V+GM+ + G  SPY  T  +K E VLD   +LI D KISN   I       + QG+ LL++AEDVE E L  +  +    T  V  +KA G  + RKA++ED+AILTGG+V+T   G +        LG   +++ T +N  ++ G G    I+ R  Q+R+ ++ +TS    +KL++RLAKL+GG AV+K
Sbjct:  184 ELDVVEGMQFDRGYASPYMITDSDKMEAVLDNPYILITDKKISNIQEILPVLEQVVQQGKPLLIIAEDVEGEALATLVVNKLRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGEVITEELGRDLKSATVESLGRAGKIVVTKENTTVVEGIGNSQQIEARIGQIRAQLEETTSEFDREKLQERLAKLAGGVAVIK 378          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_ACIAC (60 kDa chaperonin OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=groL PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.683e-32
Identity = 77/196 (39.29%), Postives = 114/196 (58.16%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            NEL+ V+GM+ + G  SPYF  +  K+  +LD   VL++D KISN   +          G+ LL++AE+VE E L  +  +      KV  +KA G  + RKA++ED+AILTGG+V+    G+         LG  KR+    +N  II G+G   DI+ R +Q+R  I+ +TSD    KL++R+AKL+GG AV+K
Sbjct:  185 NELDVVEGMQFDRGYLSPYFINNPEKQAALLDNPFVLLFDKKISNIRDLLPTLEQVAKAGRPLLIIAEEVEGEALATLVVNTIRGILKVVAVKAPGFGDRRKAMLEDIAILTGGKVIAEEVGLTLEKVTLADLGQAKRIEVGKENTTIIDGAGAAADIEARVKQIRIQIEEATSDYDREKLQERVAKLAGGVAVIK 380          
The following BLAST results are available for this feature:
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BACAH3.918e-3240.0060 kDa chaperonin OS=Bacillus thuringiensis (strai... [more]
CH60_VARPS5.117e-3239.2960 kDa chaperonin OS=Variovorax paradoxus (strain ... [more]
CH60_PROA25.117e-3239.6960 kDa chaperonin OS=Prosthecochloris aestuarii (s... [more]
CH60_AZOSE5.117e-3238.7860 kDa chaperonin OS=Azoarcus sp. (strain EbN1) GN... [more]
CH602_PARUW5.117e-3239.6960 kDa chaperonin 2 OS=Protochlamydia amoebophila ... [more]
CH60_RHOMR6.683e-3240.7260 kDa chaperonin OS=Rhodothermus marinus GN=groL ... [more]
CH60_PSEPF6.683e-3240.3160 kDa chaperonin OS=Pseudomonas fluorescens (stra... [more]
CH60_PSEF56.683e-3240.8260 kDa chaperonin OS=Pseudomonas fluorescens (stra... [more]
CH60_BACWK6.683e-3239.4960 kDa chaperonin OS=Bacillus weihenstephanensis (... [more]
CH60_ACIAC6.683e-3239.2960 kDa chaperonin OS=Acidovorax avenae subsp. citr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00269 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00269 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623178 ID=BQ623178; Name=BQ623178; organism=Citrus sinensis; type=EST; length=613bp
GGCTATAATGAATTAAATTTTGTTAAGGGAATGAAACTAGAGTGGGGTCT
TAAATCCCCATACTTCTTCACCCATAAGAATAAAAAAGAATGTGTTTTAG
ATGGTGCATTGGTTTTGATCTATGACACGAAAATTTCAAACTCCAATGTT
ATCAGGCAAGCATGTTTGCCATGTATGATGCAGGGACAAAGCTTATTGGT
TGTTGCTGAAGATGTTGAAAACGAAGTTCTAGGAGATATTGCGACAGACT
TCACCTGTACTACTGAAAAGGTTTGTATCATCAAAGCTGCTGGATTGGCA
GAAGATAGGAAGGCCATCATGGAGGACCTTGCAATTCTCACAGGAGGCCA
GGTTTTAACTGGAGGCTCAGGTATGAACTCTACGTATTTTGTGCCTCTAA
AGCTTGGCTCATGCAAAAGGGTTATAGCAACAATGGATAATGTTGTTATC
ATTGGTGGGTCTGGTGAATTGGTAGACATTCAAGAAAGATGTGAACAGCT
GAGATCTACAATAAAATTGAGCACTTCGGACAAGTTGAAAGATCGCCTTG
CAAAACTTTCTGGTGGATATGCCGTTTTGAAGGGTTGTGGACATGGGTAA
AGCTGAAGTGCGT
back to top