BQ623178

Overview
NameBQ623178
Unique NameBQ623178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10513 contig Csv1_Contig10513:551..1163. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH602_ECOK1 (60 kDa chaperonin 2 OS=Escherichia coli O1:K1 / APEC GN=groL2 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.683e-32
Identity = 76/196 (38.78%), Postives = 117/196 (59.69%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            NEL+ V+GM+ + G  SPYF  +    +  L+   +L++D KISN   +          G+ LL+VAEDVE E L  +  +      KVC +KA G  + RKA++ED+AILTGG V++   G++        LG  K+V  + +N  II G+G+  DI+ R +Q+++ I+ +TSD    KL++R+AKL+GG AV+K
Sbjct:  185 NELDVVEGMQFDRGYLSPYFINNPQSMQAELEDPFILLHDKKISNVRDLLPILEGVAKAGKPLLIVAEDVEGEALATLVVNTIRGIVKVCAVKAPGFGDRRKAMLEDMAILTGGTVISEEVGLSLEKATINDLGRAKKVQVSKENTTIIDGAGDTADIEARIKQIKAQIEETTSDYDREKLQERVAKLAGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_NITOC (60 kDa chaperonin OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=groL PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.728e-32
Identity = 77/196 (39.29%), Postives = 113/196 (57.65%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            NEL  V+GM+ + G  SPYF T +      LD   +LI+D KISN   +          G+ LLV++EDVE E L  +  +      KVC +KA G  + RKA++ED+A+LTGG V++   G++        LG  K++    +N  I+ G+G   DI+ R EQ+R  I+ +TSD    KL++R+AKL+GG AV+K
Sbjct:  185 NELEVVEGMQFDRGYLSPYFITDQQSMAADLDDPYILIHDKKISNIRDLLPVLESVAKAGKPLLVISEDVEGEALATLVVNTIRGIVKVCAVKAPGFGDRRKAMLEDIAVLTGGTVISEEVGLSLDKVTLDDLGRAKKITVNKENTTIVDGAGSADDIKARVEQVRIQIEEATSDYDKEKLQERVAKLAGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_BDEBA (60 kDa chaperonin OS=Bdellovibrio bacteriovorus GN=groL PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.728e-32
Identity = 77/194 (39.69%), Postives = 115/194 (59.28%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVL 579
            E+  V+GM+ + G  SPYF T+  + E VL+ A VL+YD KIS+   +         QG+ LL++AEDVE E L  +  +    T  +  +KA G  + RKA++ED+AILTG +V++   G+         LG  KR++   DN  II G+G+  DI  R  Q+++ I+ ++SD    KLK+RLAKL+GG AV+
Sbjct:  185 EVTVVEGMQFDRGYLSPYFVTNAERMEAVLENAYVLVYDKKISSMKDMIGILEGVAKQGRQLLIIAEDVEGEALATLVVNKLRGTLHIAAVKAPGFGDRRKAMLEDIAILTGAKVISEDVGLKLEAATVADLGVAKRIVVDKDNTTIIDGAGKKNDINGRVGQIKAQIEETSSDYDKEKLKERLAKLAGGVAVI 378          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_BACTN (60 kDa chaperonin OS=Bacteroides thetaiotaomicron GN=groL PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.728e-32
Identity = 75/193 (38.86%), Postives = 114/193 (59.07%), Query Frame = 1
Query:   13 LNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVL 579
            +  V+GM+ + G  S YF T+  K EC ++   +LIYD KISN         P +  G+ LLV+AEDV++E L  +  +   +  K+C +KA G  + RK ++ED+AILTGG V++   G+         LG+  +V  + D   I+ G+G   +I+ERC+Q+++ I  + SD    KL++RLAKLSGG AVL
Sbjct:  187 IGVVEGMQFDRGYLSAYFVTNTEKMECEMEKPYILIYDKKISNLKDFLPILEPAVQTGRPLLVIAEDVDSEALTTLVVNRLRSQLKICAVKAPGFGDRRKEMLEDIAILTGGVVISEEKGLKLEQATIEMLGTADKVTVSKDYTTIVNGAGVKENIKERCDQIKAQIVATKSDYDREKLQERLAKLSGGVAVL 379          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_BACC2 (60 kDa chaperonin OS=Bacillus cereus (strain G9842) GN=groL PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.728e-32
Identity = 78/195 (40.00%), Postives = 113/195 (57.95%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLK 582
            EL+ V+GM+ + G  SPY  T  +K E VLD   +LI D KISN   I       + QG+ LL++AEDVE E L  +  +    T  V  +KA G  + RKA++ED+AILTGG+V+T   G +        LG   +V+ T +N  ++ G G    I  R  Q+R+ ++ +TS    +KL++RLAKL+GG AV+K
Sbjct:  184 ELDVVEGMQFDRGYASPYMITDSDKMEAVLDNPYILITDKKISNIQEILPVLEQVVQQGKPLLIIAEDVEGEALATLVVNKLRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGEVITEELGRDLKSATVESLGRAGKVVVTKENTTVVEGIGNTEQIAARIGQIRAQLEETTSEFDREKLQERLAKLAGGVAVIK 378          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_BACAN (60 kDa chaperonin OS=Bacillus anthracis GN=groL PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.728e-32
Identity = 78/195 (40.00%), Postives = 113/195 (57.95%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLK 582
            EL+ V+GM+ + G  SPY  T  +K E VLD   +LI D KISN   I       + QG+ LL++AEDVE E L  +  +    T  V  +KA G  + RKA++ED+AILTGG+V+T   G +        LG   +V+ T +N  ++ G G    I+ R  Q+R+ ++ +TS    +KL++RLAKL GG AV+K
Sbjct:  184 ELDVVEGMQFDRGYASPYMITDSDKMEAVLDNPYILITDKKISNIQEILPVLEQVVQQGKPLLIIAEDVEGEALATLVVNKLRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGEVITEELGRDLKSATVESLGRAGKVVVTKENTTVVEGVGSTEQIEARIGQIRAQLEETTSEFDREKLQERLAKLVGGVAVIK 378          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_BACAC (60 kDa chaperonin OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=groL PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.728e-32
Identity = 78/195 (40.00%), Postives = 113/195 (57.95%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLK 582
            EL+ V+GM+ + G  SPY  T  +K E VLD   +LI D KISN   I       + QG+ LL++AEDVE E L  +  +    T  V  +KA G  + RKA++ED+AILTGG+V+T   G +        LG   +V+ T +N  ++ G G    I+ R  Q+R+ ++ +TS    +KL++RLAKL GG AV+K
Sbjct:  184 ELDVVEGMQFDRGYASPYMITDSDKMEAVLDNPYILITDKKISNIQEILPVLEQVVQQGKPLLIIAEDVEGEALATLVVNKLRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGEVITEELGRDLKSATVESLGRAGKVVVTKENTTVVEGVGSTEQIEARIGQIRAQLEETTSEFDREKLQERLAKLVGGVAVIK 378          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_BACAA (60 kDa chaperonin OS=Bacillus anthracis (strain A0248) GN=groL PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.728e-32
Identity = 78/195 (40.00%), Postives = 113/195 (57.95%), Query Frame = 1
Query:   10 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLK 582
            EL+ V+GM+ + G  SPY  T  +K E VLD   +LI D KISN   I       + QG+ LL++AEDVE E L  +  +    T  V  +KA G  + RKA++ED+AILTGG+V+T   G +        LG   +V+ T +N  ++ G G    I+ R  Q+R+ ++ +TS    +KL++RLAKL GG AV+K
Sbjct:  184 ELDVVEGMQFDRGYASPYMITDSDKMEAVLDNPYILITDKKISNIQEILPVLEQVVQQGKPLLIIAEDVEGEALATLVVNKLRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGEVITEELGRDLKSATVESLGRAGKVVVTKENTTVVEGVGSTEQIEARIGQIRAQLEETTSEFDREKLQERLAKLVGGVAVIK 378          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_ACISJ (60 kDa chaperonin OS=Acidovorax sp. (strain JS42) GN=groL PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.728e-32
Identity = 77/196 (39.29%), Postives = 112/196 (57.14%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            NEL  V+GM+ + G  SPYF  +  K+  +LD   VL++D KISN   +           + LL++AEDVE E L  +  +      KV  +KA G  + RKA++ED+AILTGG+V+    G+         LG  KR+    +N  II G+G   DI+ R +Q+R  I+ +TSD    KL++R+AKL+GG AV+K
Sbjct:  185 NELEVVEGMQFDRGYLSPYFINNPEKQAAILDNPFVLLFDKKISNIRDLLPTLEQVAKASRPLLIIAEDVEGEALATLVVNTIRGILKVVAVKAPGFGDRRKAMLEDIAILTGGKVIAEEVGLTLEKVTLADLGQAKRIEVGKENTTIIDGAGAAADIEARVKQIRIQIEEATSDYDREKLQERVAKLAGGVAVIK 380          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_SULSY (60 kDa chaperonin OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=groL PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.140e-31
Identity = 74/194 (38.14%), Postives = 110/194 (56.70%), Query Frame = 1
Query:   13 LNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLK 582
            L   +GM+ + G  SPYF T+  K E VL+   +LIY+ K+ N   +       +   + LL++AEDVE E L  +  +      +VC +KA G  E RKA+++D+AILTGG  +T   G+         LG   +V+   DN  IIGG G   DI+ R EQ++  I+ +TS    +KL++RLAKL+GG A++K
Sbjct:  187 LEVTEGMQFDRGYLSPYFVTNAEKMEAVLENPYILIYEKKVGNIRELLPVLEKVVQTNKPLLIIAEDVEGEALATLVVNHIKGVLRVCAVKAPGFGERRKAMLQDIAILTGGTAITEDLGIKLESVDLDMLGKADKVVVDKDNTTIIGGKGNPEDIKARIEQIKKQIETTTSEYDKEKLQERLAKLAGGVAIIK 380          
The following BLAST results are available for this feature:
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_ECOK16.683e-3238.7860 kDa chaperonin 2 OS=Escherichia coli O1:K1 / AP... [more]
CH60_NITOC8.728e-3239.2960 kDa chaperonin OS=Nitrosococcus oceani (strain ... [more]
CH60_BDEBA8.728e-3239.6960 kDa chaperonin OS=Bdellovibrio bacteriovorus GN... [more]
CH60_BACTN8.728e-3238.8660 kDa chaperonin OS=Bacteroides thetaiotaomicron ... [more]
CH60_BACC28.728e-3240.0060 kDa chaperonin OS=Bacillus cereus (strain G9842... [more]
CH60_BACAN8.728e-3240.0060 kDa chaperonin OS=Bacillus anthracis GN=groL PE... [more]
CH60_BACAC8.728e-3240.0060 kDa chaperonin OS=Bacillus anthracis (strain CD... [more]
CH60_BACAA8.728e-3240.0060 kDa chaperonin OS=Bacillus anthracis (strain A0... [more]
CH60_ACISJ8.728e-3239.2960 kDa chaperonin OS=Acidovorax sp. (strain JS42) ... [more]
CH60_SULSY1.140e-3138.1460 kDa chaperonin OS=Sulfurihydrogenibium sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00269 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00269 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623178 ID=BQ623178; Name=BQ623178; organism=Citrus sinensis; type=EST; length=613bp
GGCTATAATGAATTAAATTTTGTTAAGGGAATGAAACTAGAGTGGGGTCT
TAAATCCCCATACTTCTTCACCCATAAGAATAAAAAAGAATGTGTTTTAG
ATGGTGCATTGGTTTTGATCTATGACACGAAAATTTCAAACTCCAATGTT
ATCAGGCAAGCATGTTTGCCATGTATGATGCAGGGACAAAGCTTATTGGT
TGTTGCTGAAGATGTTGAAAACGAAGTTCTAGGAGATATTGCGACAGACT
TCACCTGTACTACTGAAAAGGTTTGTATCATCAAAGCTGCTGGATTGGCA
GAAGATAGGAAGGCCATCATGGAGGACCTTGCAATTCTCACAGGAGGCCA
GGTTTTAACTGGAGGCTCAGGTATGAACTCTACGTATTTTGTGCCTCTAA
AGCTTGGCTCATGCAAAAGGGTTATAGCAACAATGGATAATGTTGTTATC
ATTGGTGGGTCTGGTGAATTGGTAGACATTCAAGAAAGATGTGAACAGCT
GAGATCTACAATAAAATTGAGCACTTCGGACAAGTTGAAAGATCGCCTTG
CAAAACTTTCTGGTGGATATGCCGTTTTGAAGGGTTGTGGACATGGGTAA
AGCTGAAGTGCGT
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