BQ623182

Overview
NameBQ623182
Unique NameBQ623182
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623182 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.479e-18
Identity = 62/186 (33.33%), Postives = 91/186 (48.92%), Query Frame = 2
Query:    2 PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLE----DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 547
            P D G+DP  ++  P  +++ +  E+ HAR +ML   G I+PE   K          WF+ G  + DG           I L F ++A   +    EY+R   G + +    D+ +PG  FDPL L  D  +      +EIKNGRLAM  +LG   Q   TGE P+ NLA H ++P   N+ T ++
Sbjct:  177 PADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPELLGK--------GAWFEVGNSV-DG-----------IKLGFILMA---IAAPTEYWRGNGGFNWDKGTADRSYPG--FDPLKLTTDYTK------REIKNGRLAMTGLLGLTFQYLATGESPLANLAAHFANPVGANITTTLA 331          

HSP 2 Score: 70.0922 bits (170), Expect = 1.069e-11
Identity = 53/168 (31.55%), Postives = 78/168 (46.43%), Query Frame = 2
Query:   44 PDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLE-----DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNL 532
            P  + + +  E+ + R AML   G + PE             VWF+        N ++++         FA+I+ + +V   EY+R   G   +     D+ +PG  FDP  L  +       K  EIKNGRLAM  M G  +Q +VT +GPV NL +HL  P A N+
Sbjct:    1 PTVYERMRVAEVFNGRLAMLAIVGCVYPELLGN--------GVWFEVW------NKVDFYR--------FALIS-LQVVAPLEYWRGNGGFGWDGEEKYDRSYPG--FDPCNLTTE-----YTKAAEIKNGRLAMIGMFGLEVQNHVTAQGPVANLIEHLRHPLAANI 138          
BLAST of BQ623182 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.850e-18
Identity = 60/183 (32.79%), Postives = 87/183 (47.54%), Query Frame = 2
Query:    2 PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLE----DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 538
            P D G+DP  L+  PD +++ +  E+ H R AML   G I+PE   K          WF+ G  + DG  L +                + +    EY+R   G + +    D+ +PG  FDPL L  D  + A     E+KNGRLA+ A+ G   Q   TGE P+ NL+ HL++P   N+ T
Sbjct:  205 PADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELLGK--------GAWFEAGDSV-DGLKLGFI--------------TMAIAAPTEYWRGQGGFNWQKGELDRSYPG--FDPLNLTTDYTRAA-----EVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPIGANITT 357          

HSP 2 Score: 78.9518 bits (193), Expect = 2.301e-14
Identity = 58/169 (34.32%), Postives = 81/169 (47.93%), Query Frame = 2
Query:    5 GDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR-----ITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 496
            GD G+DP GL+  P  F + Q  E+ H R +ML   G ++PE              WF+    + D    N           FAV+A + +V   EY+R     + N  +  D+ +PG  FDPL L  +       K  EIKNGRLAM  M G  +Q++VTG+ P+ NL
Sbjct:  390 GDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLG--------NGAWFQ----IWDKVDFNR----------FAVVA-LQVVAPLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMNGMFGLEVQSHVTGKSPINNL 528          
BLAST of BQ623182 vs. ExPASy Swiss-Prot
Match: FCP_ISOGA (Fucoxanthin-chlorophyll a-c binding protein, chloroplastic OS=Isochrysis galbana GN=FCP PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.381e-11
Identity = 56/171 (32.75%), Postives = 76/171 (44.44%), Query Frame = 2
Query:   17 YDPFGLSKKPDDFSKYQAYEL--IHARWAMLGAAGFIIPEAFNK-FGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD------------LEDKLHPGG-PFDPLGLA-KDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 478
            +DP G  K  D    Y+  E    H R AML + GF++ E F+  F  + GP                     + IP    +  I   + +G AE +RI  G              L +   PG   FDPLGLA  DPD+F L++ KE+ +GRLAM A  GF  Q  V+G+
Sbjct:   46 FDPAGFLKGKDKLEVYRLREAETTHGRVAMLASLGFVVQEKFHPLFSGDNGPAI-------------------EQIPQLPYWLWIVMTIGIGRAELFRIQKGWAKVNPETGKADSALREGYEPGDLGFDPLGLAPSDPDEFRLMQEKELSHGRLAMIAAAGFLAQEAVSGD 197          
The following BLAST results are available for this feature:
BLAST of BQ623182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
LH15_EUGGR4.479e-1833.33Light-harvesting complex I LH35 proteins (Fragment... [more]
LH18_EUGGR5.850e-1832.79Light-harvesting complex I LH38 proteins (Fragment... [more]
FCP_ISOGA2.381e-1132.75Fucoxanthin-chlorophyll a-c binding protein, chlor... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00273 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00273 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623182 ID=BQ623182; Name=BQ623182; organism=Citrus sinensis; type=EST; length=631bp
TCCCGGAGACTATGGTTACGATCCTTTTGGTCTCAGCAAGAAACCAGACG
ACTTCAGCAAATATCAGGCATATGAATTGATTCATGCCAGATGGGCCATG
CTTGGTGCTGCTGGTTTCATCATTCCTGAAGCCTTTAACAAGTTTGGTGC
TAACTGTGGTCCTGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCTTG
ATGGAAACACATTGAACTACTTCGGAAAGAACATCCCAATCAACCTTGTT
TTTGCTGTCATTGCTGAGATTGTTCTTGTAGGTGGTGCTGAATATTATAG
AATCACCAACGGTTTGGATTTGGAGGACAAGCTTCACCCAGGAGGTCCAT
TTGACCCACTGGGATTAGCAAAGGATCCTGACCAATTTGCATTGCTAAAA
GTGAAGGAGATCAAGAATGGAAGACTTGCAATGTTTGCCATGCTTGGTTT
CTTTCTCCAAGCTTATGTCACAGGTGAAGGTCCAGTTGAGAACCTTGCTA
AACATCTCAGTGATCCTTTTGCCAACAACTTGCTTACCGTGATCTCCGGA
AACGTAGAGAGAGCTCCCACCTGTGATTTCAGTTGTCTGATGTTCTTTTC
ACTCAATCTAAATGCATTGTCATTTAATTCA
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