BQ623198

Overview
NameBQ623198
Unique NameBQ623198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2325 contig Csv1_Contig2325:351..952. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623198 vs. ExPASy Swiss-Prot
Match: EFTU_HERAU (Elongation factor Tu OS=Herpetosiphon aurantiacus GN=tuf PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.250e-11
Identity = 42/143 (29.37%), Postives = 72/143 (50.35%), Query Frame = 2
Query:    8 LPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 427
            +P++DV+ I G GTV  GR+E G++K G    ++  GP   TT V  VEM  + L E   GDNVG  ++ +   D++RG V   +K    +    F ++V ++    + G  ++P    +     V+ +++   I    G E+
Sbjct:  218 MPIEDVFSIKGRGTVVTGRIERGIVKVGDTIEIIGMGPDVRTTAVTGVEMFKKLLDEGRAGDNVGALLRGIERTDVERGQVL--AKPGSIKPHTKFKAEVYVLKK--EEGGRHSPFFSGYRPQFYVRTTDVTGAIGLPEGVEM 356          
BLAST of BQ623198 vs. ExPASy Swiss-Prot
Match: EFTU_FLAJ1 (Elongation factor Tu OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=tuf PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.250e-11
Identity = 43/143 (30.07%), Postives = 71/143 (49.65%), Query Frame = 2
Query:    8 LPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 427
            +P++DV+ I G GTV  GR+ETGV   G    ++  G   LT+ +  VEM  + L     GDNVG  ++ +   D+KRG V    K    +  A F ++V I+    + G  + P  + +     V+ +++   I   +G E+
Sbjct:  213 MPVEDVFTITGRGTVATGRIETGVANTGDPVEIIGMGAEKLTSTITGVEMFRKILDRGEAGDNVGLLLRGIDKADIKRGMVI--IKPGSVKPHAKFKAEVYILKK--EEGGRHTPFHNNYRPQFYVRTTDVTGVISLPAGVEM 351          
BLAST of BQ623198 vs. ExPASy Swiss-Prot
Match: EFTU_CYTH3 (Elongation factor Tu OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=tuf PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.250e-11
Identity = 38/143 (26.57%), Postives = 73/143 (51.05%), Query Frame = 2
Query:    8 LPLQDVYKIGGIGTVPVGRVETGVLKPGM---VVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 427
            +P++DV+ I G GTV  GR+E GV+  G    ++ FG   L + V  VEM  + L     GDNVG  ++ +  + +KRG V    K    +  + F  ++ +++   + G  + P  + +     ++ +++  +I+  +G E+
Sbjct:  213 MPVEDVFSITGRGTVATGRIERGVINSGEGVDIIGFGAENLKSTVTGVEMFRKILDRGEAGDNVGLLLRGIEKESIKRGMVI--CKPGSVKPHSEFKGEIYVLSK--EEGGRHTPFFNKYRPQFYMRTTDVTGEIELPAGTEM 351          
The following BLAST results are available for this feature:
BLAST of BQ623198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
EFTU_HERAU8.250e-1129.37Elongation factor Tu OS=Herpetosiphon aurantiacus ... [more]
EFTU_FLAJ18.250e-1130.07Elongation factor Tu OS=Flavobacterium johnsoniae ... [more]
EFTU_CYTH38.250e-1126.57Elongation factor Tu OS=Cytophaga hutchinsonii (st... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00289 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00289 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623198 ID=BQ623198; Name=BQ623198; organism=Citrus sinensis; type=EST; length=603bp
CCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCATTGGAACCG
TCCCAGTGGGTCGCGTTGAGACCGGTGTGCTCAAGCCTGGTATGGTGGTG
ACATTTGGTCCCTCTGGATTGACAACTGAGGTTAAGTCTGTTGAGATGCA
CCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGTTGGCTTCAACG
TGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTTGCTTCCAAC
TCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACTTCACAGGTCAT
CATCATGAACCATCCTGGCCAGATTGGAAATGGATATGCCCCAGTGCTTG
ACTGCCACACCTCCCACATTGCTGTCAAGTTTTCTGAGCTTGTGACCAAG
ATTGACAGGCGATCTGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAA
GAATGGAGATGCCGGAATGGTTAAGATGATTCCCACCAAGCCCATGGTTG
TTGAGACCTTCTCCGACTACCCACCCCTTGGTCGTTTTTGCTGTTAGGGA
CATGCGTCAGACTGTAGCTGTTGGTGTGATCAAGAGTGTTGAAAAGAAGG
ATC
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