BQ623198

Overview
NameBQ623198
Unique NameBQ623198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2325 contig Csv1_Contig2325:351..952. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623198 vs. ExPASy Swiss-Prot
Match: EF1A_NEUCR (Elongation factor 1-alpha OS=Neurospora crassa GN=tef-1 PE=3 SV=2)

HSP 1 Score: 291.197 bits (744), Expect = 2.690e-78
Identity = 136/179 (75.98%), Postives = 160/179 (89.39%), Query Frame = 2 
Query:    2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRF 538
            LRLPLQDVYKIGGIGTVPVGR+ETGVLKPGMVVTF PS +TTEVKSVEMHHE L + +PGDNVGFNVKNV+VKD++RG VA +SK+DP   AA+FT+QVI++NHPGQ+G GYAPVLDCHT+HIA KF+EL+ KIDRR+GK +E  PKF+K+GDA +VKMIP+KPM VE F+DYPPLGRF
Sbjct:  245 LRLPLQDVYKIGGIGTVPVGRIETGVLKPGMVVTFAPSNVTTEVKSVEMHHEQLAQGVPGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPAGAASFTAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKAVEASPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRF 423
[Close]
BLAST of BQ623198 vs. ExPASy Swiss-Prot
Match: EF1A2_OSCTI (Elongation factor 1-alpha 2 OS=Oscheius tipulae GN=eft-2 PE=3 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 2.690e-78
Identity = 136/179 (75.98%), Postives = 161/179 (89.94%), Query Frame = 2 
Query:    2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRF 538
            LRLPLQDVYKIGGIGTVPVGRVETGV+KPGMVVTF P  +TTEVKSVEMHHE+L EA PGDNVGFNVKNV+VKD++RG V S+SK+DPA+E+ +FT+QVI+MNHPGQIG GY PVLDCHT+HIA KF+EL  K+DRR+GK++E  PKFLK+GDAG+V++IPTKP+ VE F+DY PLGRF
Sbjct:  246 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAQPGDNVGFNVKNVSVKDIRRGSVCSDSKNDPAKESKSFTAQVIVMNHPGQIGAGYTPVLDCHTAHIACKFAELKEKVDRRTGKKVEDPPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRF 424
[Close]
BLAST of BQ623198 vs. ExPASy Swiss-Prot
Match: EF1A3_HUMAN (Putative elongation factor 1-alpha-like 3 OS=Homo sapiens GN=EEF1AL3 PE=5 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 3.513e-78
Identity = 142/179 (79.33%), Postives = 157/179 (87.71%), Query Frame = 2 
Query:    2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRF 538
            LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF P  +TTEVKSVEMHHEAL EALPGDNVGF VKNV+VKD++RG VA +SK+DP  EAA FT+QVII+NHPGQI  GYAPVLDCH +HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRF
Sbjct:  246 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFKVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHMAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRF 424
[Close]
BLAST of BQ623198 vs. ExPASy Swiss-Prot
Match: EF1A_SORMA (Elongation factor 1-alpha OS=Sordaria macrospora GN=TEF PE=3 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 4.588e-78
Identity = 136/179 (75.98%), Postives = 160/179 (89.39%), Query Frame = 2 
Query:    2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRF 538
            LRLPLQDVYKIGGIGTVPVGR+ETGVLKPGMVVTF PS +TTEVKSVEMHHE L + +PGDNVGFNVKNV+VKD++RG VA +SK+DP   AA+FT+QVI++NHPGQ+G GYAPVLDCHT+HIA KF+EL+ KIDRR+GK +E  PKF+K+GDA +VKMIP+KPM VE F+DYPPLGRF
Sbjct:  245 LRLPLQDVYKIGGIGTVPVGRIETGVLKPGMVVTFAPSNVTTEVKSVEMHHEQLAQGVPGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPVGAASFTAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKAVETSPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRF 423
[Close]
BLAST of BQ623198 vs. ExPASy Swiss-Prot
Match: EF1A_DANRE (Elongation factor 1-alpha OS=Danio rerio GN=eef1a PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 4.588e-78
Identity = 140/179 (78.21%), Postives = 158/179 (88.27%), Query Frame = 2 
Query:    2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRF 538
            LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF P+ +TTEVKSVEMHHE+L EA PGDNVGFNVKNV+VKD++RG VA +SK+DP  EAANF +QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRF
Sbjct:  246 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPANVTTEVKSVEMHHESLTEATPGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPMEAANFNAQVIILNHPGQISQGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDNPKALKSGDAAIVEMVPGKPMCVESFSTYPPLGRF 424
[Close]
BLAST of BQ623198 vs. ExPASy Swiss-Prot
Match: EF1A_CAEEL (Elongation factor 1-alpha OS=Caenorhabditis elegans GN=eft-3 PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 4.588e-78
Identity = 136/179 (75.98%), Postives = 160/179 (89.39%), Query Frame = 2 
Query:    2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRF 538
            LRLPLQDVYKIGGIGTVPVGRVETG++KPGMVVTF P  +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VKD++RG V S+SK DPA+EA  F +QVIIMNHPGQI NGY PVLDCHT+HIA KF+EL  K+DRR+GK++E  PKFLK+GDAG+V++IPTKP+ VE+F+DY PLGRF
Sbjct:  246 LRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRF 424
[Close]
BLAST of BQ623198 vs. ExPASy Swiss-Prot
Match: EF1A1_OSCTI (Elongation factor 1-alpha 1 OS=Oscheius tipulae GN=eft-1 PE=3 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 4.588e-78
Identity = 136/179 (75.98%), Postives = 161/179 (89.94%), Query Frame = 2 
Query:    2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRF 538
            LRLPLQDVYKIGGIGTVPVGRVETGV+KPGMVVTF P  +TTEVKSVEMHHE+L EA PGDNVGFNVKNV+VKD++RG V S+SK+DPA+E+ +FT+QVI+MNHPGQIG GY PVLDCHT+HIA KF+EL  K+DRR+GK++E  PKFLK+GDAG+V++IPTKP+ VE F+DY PLGRF
Sbjct:  246 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAQPGDNVGFNVKNVSVKDIRRGSVCSDSKNDPAKESKSFTAQVIVMNHPGQIGAGYTPVLDCHTAHIACKFAELKEKVDRRTGKKVEDLPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRF 424
[Close]
BLAST of BQ623198 vs. ExPASy Swiss-Prot
Match: EF1A2_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-2 PE=3 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 5.992e-78
Identity = 135/179 (75.42%), Postives = 160/179 (89.39%), Query Frame = 2 
Query:    2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRF 538
            LRLPLQDVYKIGGIGTVPVGRVETG +K GMVV F P+ +TTEVKSVEMHHE L E LPGDNVGFNVKNV+VKD++RG V S+SK+DPA+E+A+FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFSEL+ KIDRRSGK++E  PKF+K+GD+ +VKM+P+KPM VE ++DYPPLGRF
Sbjct:  244 LRLPLQDVYKIGGIGTVPVGRVETGTIKAGMVVNFAPAAVTTEVKSVEMHHETLTEGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRF 422
[Close]
BLAST of BQ623198 vs. ExPASy Swiss-Prot
Match: EF1A1_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 5.992e-78
Identity = 135/179 (75.42%), Postives = 160/179 (89.39%), Query Frame = 2 
Query:    2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRF 538
            LRLPLQDVYKIGGIGTVPVGRVETG +K GMVV F P+ +TTEVKSVEMHHE L E LPGDNVGFNVKNV+VKD++RG V S+SK+DPA+E+A+FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFSEL+ KIDRRSGK++E  PKF+K+GD+ +VKM+P+KPM VE ++DYPPLGRF
Sbjct:  244 LRLPLQDVYKIGGIGTVPVGRVETGTIKAGMVVNFAPAAVTTEVKSVEMHHETLTEGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRF 422
[Close]
BLAST of BQ623198 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.022e-77
Identity = 135/179 (75.42%), Postives = 162/179 (90.50%), Query Frame = 2 
Query:    2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRF 538
            LRLPLQDVYKIGGIGTVPVGRVETG++K GMVVTF PS +TTEVKSVEMHHE L E  PGDNVGFNVKNV+VKD++RG VAS+SK+DPA+EAA+F +QVI++NHPGQIG GYAPVLDCHT+HIA KF+EL+ KIDRR+GK LE  PKF+K+GDA +VK++P+KPM VE++++YPPLGRF
Sbjct:  244 LRLPLQDVYKIGGIGTVPVGRVETGIIKAGMVVTFAPSNVTTEVKSVEMHHEQLAEGKPGDNVGFNVKNVSVKDIRRGNVASDSKNDPAKEAASFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKSLEASPKFVKSGDACIVKLVPSKPMCVESYNEYPPLGRF 422
The following BLAST results are available for this feature:
BLAST of BQ623198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
EF1A_NEUCR2.690e-7875.98Elongation factor 1-alpha OS=Neurospora crassa GN=... [more]
EF1A2_OSCTI2.690e-7875.98Elongation factor 1-alpha 2 OS=Oscheius tipulae GN... [more]
EF1A3_HUMAN3.513e-7879.33Putative elongation factor 1-alpha-like 3 OS=Homo ... [more]
EF1A_SORMA4.588e-7875.98Elongation factor 1-alpha OS=Sordaria macrospora G... [more]
EF1A_DANRE4.588e-7878.21Elongation factor 1-alpha OS=Danio rerio GN=eef1a ... [more]
EF1A_CAEEL4.588e-7875.98Elongation factor 1-alpha OS=Caenorhabditis elegan... [more]
EF1A1_OSCTI4.588e-7875.98Elongation factor 1-alpha 1 OS=Oscheius tipulae GN... [more]
EF1A2_RHIRA5.992e-7875.42Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A1_RHIRA5.992e-7875.42Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A_SCHCO1.022e-7775.42Elongation factor 1-alpha OS=Schizophyllum commune... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00289 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00289 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623198 ID=BQ623198; Name=BQ623198; organism=Citrus sinensis; type=EST; length=603bp
CCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCATTGGAACCG
TCCCAGTGGGTCGCGTTGAGACCGGTGTGCTCAAGCCTGGTATGGTGGTG
ACATTTGGTCCCTCTGGATTGACAACTGAGGTTAAGTCTGTTGAGATGCA
CCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGTTGGCTTCAACG
TGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTTGCTTCCAAC
TCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACTTCACAGGTCAT
CATCATGAACCATCCTGGCCAGATTGGAAATGGATATGCCCCAGTGCTTG
ACTGCCACACCTCCCACATTGCTGTCAAGTTTTCTGAGCTTGTGACCAAG
ATTGACAGGCGATCTGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAA
GAATGGAGATGCCGGAATGGTTAAGATGATTCCCACCAAGCCCATGGTTG
TTGAGACCTTCTCCGACTACCCACCCCTTGGTCGTTTTTGCTGTTAGGGA
CATGCGTCAGACTGTAGCTGTTGGTGTGATCAAGAGTGTTGAAAAGAAGG
ATC
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