BQ623220

Overview
NameBQ623220
Unique NameBQ623220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623220_ssr256 microsatellite BQ623220_ssr256:256..273. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:617..1054. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.309e-16
Identity = 43/60 (71.67%), Postives = 45/60 (75.00%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 181
            KND WHRVERSSGKF RRFRLP+NAKV +VKASMENGVLTVT            AIEISG
Sbjct:   95 KNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEISG 154          
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.309e-16
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 181
            KNDKW RVERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT            +IEISG
Sbjct:   95 KNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKPDVKSIEISG 154          
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.309e-16
Identity = 42/60 (70.00%), Postives = 46/60 (76.67%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 181
            K D+WHRVERSSGKFLRRFRLPDNAK EQ+KASMENGVLTVT            +I+ISG
Sbjct:  102 KTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161          
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.234e-16
Identity = 42/60 (70.00%), Postives = 45/60 (75.00%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 181
            KND WHRV+RSSGKF+RRFRLP+NAKVEQVKA MENGVLTVT             IEISG
Sbjct:   95 KNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154          
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.234e-16
Identity = 42/60 (70.00%), Postives = 46/60 (76.67%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 181
            KND WHRVERSSGK +RRFRLP+NAKV+QVKASMENGVLTVT            AI+ISG
Sbjct:   94 KNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153          
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.234e-16
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 181
            KNDKWHRVERSSGKFLRRFRLP+NAKV++VKA+M NGV+TVT            AI+ISG
Sbjct:   98 KNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157          
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.917e-16
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 181
            KNDKWHRVERSSGKF RRFRLP+NAK+E++KASMENGVL+VT            +I+ISG
Sbjct:   98 KNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157          
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.917e-16
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 181
            K+DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT            +I+ISG
Sbjct:  100 KSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQISG 159          
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.976e-16
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEIS 178
            KND+WHRVERSSGKF+RRFRLP+NAK++QVKA+MENGVLTVT            +IEIS
Sbjct:   84 KNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEIKKPEVKSIEIS 142          
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.499e-16
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 181
            KND+WHR+ERSSGKF+RRFRLP+NAK++QVKA+MENGVLTVT             I+ISG
Sbjct:   99 KNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158          
The following BLAST results are available for this feature:
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
HSP14_SOYBN1.309e-1671.6717.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_SOLPE1.309e-1670.0017.7 kDa class I heat shock protein OS=Solanum per... [more]
HS17A_ORYSJ1.309e-1670.0017.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP15_SOYBN2.234e-1670.0017.6 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_SOYBN2.234e-1670.0017.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_DAUCA2.234e-1668.3317.8 kDa class I heat shock protein OS=Daucus caro... [more]
HS17C_ARATH2.917e-1666.6717.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HS177_ORYSJ2.917e-1668.3317.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_MEDSA4.976e-1667.8018.1 kDa class I heat shock protein (Fragment) OS=... [more]
HSP12_MEDSA6.499e-1665.0018.2 kDa class I heat shock protein OS=Medicago sa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00311 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00311 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623220 ID=BQ623220; Name=BQ623220; organism=Citrus sinensis; type=EST; length=438bp
GAAGAATGACAAGTGGCATCGCGTCGAGAGGAGCAGTGGCAAGTTCCTGA
GGAGGTTCAGGTTGCCCGACAATGCTAAGGTGGAGCAGGTTAAGGCCAGC
ATGGAGAATGGTGTGCTCACAGTGACTGTTCCTAAACAGGAGGAGAAGAA
ACCTGAAGTTAAGGCCATTGAGATCTCTGGCTAAGTGATAAGTGTAAATG
TTTTCAAGATTGTGTCTTTGGTTTGCTAATAAATTTGGTACGAAAGCAAA
GCCCTTGTGTGTGTGTGTGTGTGTTTGCAAGAGCTTCCCTTCCCCCCTGT
TTAATTTGATGTGATTATGTTTGTGTGTTTGCAAGAGCTTCAGGAGCCAG
TCTCAAGCGTTGTAACTAGTTTTTTAAATGATAAAAGTGTGATGCAATAA
AATATATTTTGTAATGCGAAAAAAAAAAAAAAAAAAAA
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