BQ623220

Overview
NameBQ623220
Unique NameBQ623220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623220_ssr256 microsatellite BQ623220_ssr256:256..273. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:617..1054. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.147e-12
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 2 
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 127
            K D WHRVERSSG+F R+F+LP+N K++QVKASMENGVLTVT
Sbjct:   96 KQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVT 137
[Close]
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.556e-12
Identity = 38/61 (62.30%), Postives = 42/61 (68.85%), Query Frame = 2 
Query:    2 KND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 181
            KND +WH VERSSGKF RRFRLP  A+V+QV ASM+NGVLTVT            AI ISG
Sbjct:   90 KNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAIPISG 150
The following BLAST results are available for this feature:
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
HS178_ARATH1.147e-1276.1917.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS166_ORYSJ2.556e-1262.3016.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00311 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00311 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623220 ID=BQ623220; Name=BQ623220; organism=Citrus sinensis; type=EST; length=438bp
GAAGAATGACAAGTGGCATCGCGTCGAGAGGAGCAGTGGCAAGTTCCTGA
GGAGGTTCAGGTTGCCCGACAATGCTAAGGTGGAGCAGGTTAAGGCCAGC
ATGGAGAATGGTGTGCTCACAGTGACTGTTCCTAAACAGGAGGAGAAGAA
ACCTGAAGTTAAGGCCATTGAGATCTCTGGCTAAGTGATAAGTGTAAATG
TTTTCAAGATTGTGTCTTTGGTTTGCTAATAAATTTGGTACGAAAGCAAA
GCCCTTGTGTGTGTGTGTGTGTGTTTGCAAGAGCTTCCCTTCCCCCCTGT
TTAATTTGATGTGATTATGTTTGTGTGTTTGCAAGAGCTTCAGGAGCCAG
TCTCAAGCGTTGTAACTAGTTTTTTAAATGATAAAAGTGTGATGCAATAA
AATATATTTTGTAATGCGAAAAAAAAAAAAAAAAAAAA
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