BQ623221

Overview
NameBQ623221
Unique NameBQ623221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623221 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.267e-42
Identity = 73/116 (62.93%), Postives = 92/116 (79.31%), Query Frame = 3
Query:   27 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKV 374
            MGR PCC+K    KG WT EED  L++YI+ HG G WR++P   GLLRC KSCRLRW NYLRP +KRGNFT++E+++II L +LLGN+W+ IA  LP RTDN+IKNYWNTH+K+K+
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRKL 116          
BLAST of BQ623221 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.573e-42
Identity = 73/116 (62.93%), Postives = 92/116 (79.31%), Query Frame = 3
Query:   27 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKV 374
            MGR PCC+K    KG WT EED  LV+YI+ HG G WR++P   GLLRC KSCRLRW NYLRP +KRGNFT++E+++II L +LLGN+W+ IA  LP RTDN+IKNYWNTH+++K+
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 116          
BLAST of BQ623221 vs. ExPASy Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.573e-42
Identity = 73/116 (62.93%), Postives = 92/116 (79.31%), Query Frame = 3
Query:   27 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKV 374
            MGR PCC+K    KG WT EED  LV+YI+ HG G WR++P   GLLRC KSCRLRW NYLRP +KRGNFT++E+++II L +LLGN+W+ IA  LP RTDN+IKNYWNTH+++K+
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 116          
BLAST of BQ623221 vs. ExPASy Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.505e-42
Identity = 72/112 (64.29%), Postives = 88/112 (78.57%), Query Frame = 3
Query:   39 PCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKV 374
            PCC K+G+K+GPWT EED ILVS+I++ G G WR++P   GLLRC KSCRLRW NYLRP +KRG  T  EE +I+ L  LLGNRW+ IA  +P RTDN+IKNYWNTHL+KK+
Sbjct:   16 PCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKL 127          
BLAST of BQ623221 vs. ExPASy Swiss-Prot
Match: MYB1_HORVU (Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.505e-42
Identity = 81/168 (48.21%), Postives = 105/168 (62.50%), Query Frame = 3
Query:   27 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKVRKLQLAAAGCSEDNSQYRDELASASSQQISRGQWERRLQTDIHMAKQALCAA 530
            MGR PCC+K    KG WT EED  L +YI+ HG G WR++P   GLLRC KSCRLRW NYLRP +KRGNF+ +E+++II L +LLGN+W+ IA  LP RTDN+IKNYWNTH+++K+    +        NS +     + S +   R       + D   AK A  AA
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLTSRGIDPVTHRAINSDHAASNITISFESAQRDDKGAVFRRDAEPAKAAAAAA 168          
BLAST of BQ623221 vs. ExPASy Swiss-Prot
Match: MYB32_ARATH (Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.612e-41
Identity = 78/143 (54.55%), Postives = 101/143 (70.63%), Query Frame = 3
Query:   27 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKVRKLQLAAAGCSEDNSQYRDELASASSQ 455
            MGR PCC+K    KG WT EED  L+SYI+ HG G WR++P + GL RC KSCRLRW NYLRP +KRGNFT +E+ +II L +LLGN+W+ IA+ LP RTDN+IKNYWNTH+K+K+ +  +  A     N     + +S SS+
Sbjct:    1 MGRSPCCEKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINYLRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKLLRKGIDPATHRPINETKTSQDSSDSSK 143          
BLAST of BQ623221 vs. ExPASy Swiss-Prot
Match: MYB38_MAIZE (Myb-related protein Zm38 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.373e-40
Identity = 71/116 (61.21%), Postives = 90/116 (77.59%), Query Frame = 3
Query:   27 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKV 374
            MGR PCC+K    +G WT EED  LV+YI+ HG G WR++P   GLLRC KSCRLRW NYLRP +KRGNFT  E+ +I+ L +LLGN+W+ IA+ LP RTDN+IKNYWNTH+++K+
Sbjct:    1 MGRSPCCEKAHTNRGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHVRRKL 116          
BLAST of BQ623221 vs. ExPASy Swiss-Prot
Match: RAX3_ARATH (Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.058e-40
Identity = 82/159 (51.57%), Postives = 99/159 (62.26%), Query Frame = 3
Query:   27 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPG-NWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKV--RKLQLAAAGCSEDNSQYRDELASASSQQISRGQWERRLQT 494
            MGR PCCDK  +KKGPW+PEED  L SYI+  G G NW A+P   GL RC KSCRLRW NYLRP IK G F+++EE +I  L   +G+RW+ IA+ LP RTDNDIKNYWNT LKKK+  ++ +     C E              QQI      R+ QT
Sbjct:    1 MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLINKQRKELQEACMEQQEMMVMMKRQHQQQQIQTSFMMRQDQT 159          
BLAST of BQ623221 vs. ExPASy Swiss-Prot
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.381e-39
Identity = 75/148 (50.68%), Postives = 100/148 (67.57%), Query Frame = 3
Query:   27 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPG-NWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKVRKLQLAAAGCSEDNSQYRDELASASSQQISR 467
            MGR PCCDK  +K+GPW+PEED  L  YI+++G G NW + P   GL RC KSCRLRW NYLRP IK G+F+++E+++I  L A +G+RW+ IA++LP RTDNDIKNYWNT L+KK     L ++     +S       +  SQ + R
Sbjct:    1 MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLNYLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKK-----LLSSSSDSSSSAMASPYLNPISQDVKR 143          
BLAST of BQ623221 vs. ExPASy Swiss-Prot
Match: RAX2_ARATH (Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.415e-39
Identity = 71/117 (60.68%), Postives = 89/117 (76.07%), Query Frame = 3
Query:   27 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPG-NWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKV 374
            MGR PCCDK  +K+GPW+PEED  L  YI++ G G NW A+P   GL RC KSCRLRW NYLRP I+ G+FT++E+ +I  L A +G+RW+ IA++L  RTDNDIKNYWNT LKKK+
Sbjct:    1 MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLNYLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKKL 117          
The following BLAST results are available for this feature:
BLAST of BQ623221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
MYB30_ANTMA4.267e-4262.93Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
MYB4_ARATH5.573e-4262.93Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
MYB08_ANTMA5.573e-4262.93Myb-related protein 308 OS=Antirrhinum majus GN=MY... [more]
MYB5_ARATH9.505e-4264.29Transcription repressor MYB5 OS=Arabidopsis thalia... [more]
MYB1_HORVU9.505e-4248.21Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1... [more]
MYB32_ARATH3.612e-4154.55Transcription factor MYB32 OS=Arabidopsis thaliana... [more]
MYB38_MAIZE1.373e-4061.21Myb-related protein Zm38 OS=Zea mays PE=2 SV=1[more]
RAX3_ARATH3.058e-4051.57Transcription factor RAX3 OS=Arabidopsis thaliana ... [more]
RAX1_ARATH3.381e-3950.68Transcription factor RAX1 OS=Arabidopsis thaliana ... [more]
RAX2_ARATH4.415e-3960.68Transcription factor RAX2 OS=Arabidopsis thaliana ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00312 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00312 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623221 ID=BQ623221; Name=BQ623221; organism=Citrus sinensis; type=EST; length=620bp
AGAAGAAGAACTTTAACAAATTTGATATGGGGAGGCCACCTTGTTGTGAC
AAAATTGGTATCAAGAAAGGGCCATGGACTCCAGAAGAAGATATCATTTT
AGTTTCTTATATTCAAGAGCATGGCCCTGGAAATTGGAGGGCTGTTCCCA
CTAATACAGGATTGCTTAGATGCAGCAAAAGTTGCAGGCTTAGATGGACT
AATTACCTAAGGCCAGGGATCAAGCGTGGGAATTTCACTGATCAAGAAGA
GAAGATGATAATTCATCTGCAAGCACTTTTGGGCAACAGATGGGCGGCTA
TTGCTTCTTATCTCCCTCAGAGAACTGACAATGACATCAAGAACTATTGG
AATACTCACTTGAAGAAGAAGGTGAGGAAGCTGCAACTAGCTGCTGCTGG
CTGCTCTGAAGATAATAGCCAATATAGAGATGAGCTAGCTTCAGCTTCTT
CACAGCAAATCTCAAGGGGTCAGTGGGAGAGAAGGCTGCAGACTGATATT
CACATGGCTAAGCAAGCTCTATGTGCGGCCTTGTCACCAGATAAAGCGAG
TATTTTGTCTGAATTGAAAGCCTGCTAATGGGTTCATTTCCTACACAAAA
CCAGCAGTTCAAGCACCAGC
back to top