BQ623221

Overview
NameBQ623221
Unique NameBQ623221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623221 vs. ExPASy Swiss-Prot
Match: MYB_MOUSE (Myb proto-oncogene protein OS=Mus musculus GN=Myb PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.755e-22
Identity = 46/105 (43.81%), Postives = 69/105 (65.71%), Query Frame = 3
Query:   66 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKVRK 380
            KGPWT EED  ++  +Q++GP  W  +  +    R  K CR RW N+L P +K+ ++T++E+++I      LGNRWA IA  LP RTDN IKN+WN+ +++KV +
Sbjct:   92 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195          
BLAST of BQ623221 vs. ExPASy Swiss-Prot
Match: MYB_HUMAN (Myb proto-oncogene protein OS=Homo sapiens GN=MYB PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 3.755e-22
Identity = 46/105 (43.81%), Postives = 69/105 (65.71%), Query Frame = 3
Query:   66 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKVRK 380
            KGPWT EED  ++  +Q++GP  W  +  +    R  K CR RW N+L P +K+ ++T++E+++I      LGNRWA IA  LP RTDN IKN+WN+ +++KV +
Sbjct:   92 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195          
BLAST of BQ623221 vs. ExPASy Swiss-Prot
Match: MYB_CHICK (Myb proto-oncogene protein OS=Gallus gallus GN=MYB PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.755e-22
Identity = 46/105 (43.81%), Postives = 69/105 (65.71%), Query Frame = 3
Query:   66 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKVRK 380
            KGPWT EED  ++  +Q++GP  W  +  +    R  K CR RW N+L P +K+ ++T++E+++I      LGNRWA IA  LP RTDN IKN+WN+ +++KV +
Sbjct:   92 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195          
BLAST of BQ623221 vs. ExPASy Swiss-Prot
Match: MYB_BOVIN (Myb proto-oncogene protein OS=Bos taurus GN=MYB PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.755e-22
Identity = 46/105 (43.81%), Postives = 69/105 (65.71%), Query Frame = 3
Query:   66 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKVRK 380
            KGPWT EED  ++  +Q++GP  W  +  +    R  K CR RW N+L P +K+ ++T++E+++I      LGNRWA IA  LP RTDN IKN+WN+ +++KV +
Sbjct:   92 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195          
BLAST of BQ623221 vs. ExPASy Swiss-Prot
Match: RS2_ORYSJ (Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica GN=RS2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.905e-22
Identity = 48/106 (45.28%), Postives = 70/106 (66.04%), Query Frame = 3
Query:   75 WTPEEDIILVSYIQEHGPGNWRAVPT--NTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKVRKLQ 386
            W PEED IL++Y++++GP  W  V    N  L R +KSC  RW NYLRPGIK+G+ TD E++++I LQA  GN+W  IA+ +P RT   +  +W    +K+ R+L+
Sbjct:   12 WRPEEDAILLAYVRQYGPREWSLVSQRMNRPLHRDAKSCLERWKNYLRPGIKKGSLTDDEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRELR 117          
BLAST of BQ623221 vs. ExPASy Swiss-Prot
Match: MYBA_XENLA (Myb-related protein A OS=Xenopus laevis GN=mybl1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.905e-22
Identity = 45/105 (42.86%), Postives = 68/105 (64.76%), Query Frame = 3
Query:   66 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKVRK 380
            KGPWT EED  ++  + ++GP  W  +  +    R  K CR RW N+L P +K+ ++T++E+++I      +GNRWA IA  LP RTDN IKN+WN+ +K+KV +
Sbjct:   86 KGPWTKEEDQRVIELVHKYGPKKWSIIAKHLKG-RIGKQCRERWHNHLNPDVKKSSWTEEEDRIIYSAHKRMGNRWAEIAKLLPGRTDNSIKNHWNSTMKRKVEQ 189          
BLAST of BQ623221 vs. ExPASy Swiss-Prot
Match: MYBB_XENLA (Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.093e-21
Identity = 48/119 (40.34%), Postives = 75/119 (63.03%), Query Frame = 3
Query:   66 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKVRK---LQLAAAGCSED 413
            KGPWT EED  ++  ++++G  +W  +       R  K CR RW N+L P +K+ ++T++E+++I     +LGNRWA IA  LP RTDN +KN+WN+ +K+KV     L + A+G  E+
Sbjct:   83 KGPWTKEEDEKVIELVKKYGTKHWTLIAKQLRG-RMGKQCRERWHNHLNPEVKKSSWTEEEDRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVETGGFLTVKASGQQEE 200          
BLAST of BQ623221 vs. ExPASy Swiss-Prot
Match: RS2_MAIZE (Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.427e-21
Identity = 46/106 (43.40%), Postives = 70/106 (66.04%), Query Frame = 3
Query:   75 WTPEEDIILVSYIQEHGPGNWRAVPT--NTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKVRKLQ 386
            W PEED +L +Y++++GP  W  V    N  L R +KSC  RW NYLRPGIK+G+ T++E++++I LQA  GN+W  IA+ +P RT   +  +W    +K+ R+L+
Sbjct:    7 WRPEEDAVLRAYVRQYGPREWHLVSQRMNVALDRDAKSCLERWKNYLRPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRELR 112          
BLAST of BQ623221 vs. ExPASy Swiss-Prot
Match: MYBB_CHICK (Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.864e-21
Identity = 44/103 (42.72%), Postives = 68/103 (66.02%), Query Frame = 3
Query:   66 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKV 374
            KGPWT EED  ++  ++++G   W  +  +    R  K CR RW N+L P +K+ ++T++E+++I     +LGNRWA IA  LP RTDN +KN+WN+ +K+KV
Sbjct:   83 KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG-RLGKQCRERWHNHLNPEVKKSSWTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 184          
BLAST of BQ623221 vs. ExPASy Swiss-Prot
Match: MYB_XENLA (Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.423e-21
Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = 3
Query:   66 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKK 371
            KGPWT EED  ++  + ++GP  W  +  +    R  K CR RW N+L P +K+ ++T++E++ I      LGNRWA IA  LP RTDN IKN+WN+ +++K
Sbjct:   89 KGPWTKEEDQRVIELVHKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKSSWTEEEDRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 189          
The following BLAST results are available for this feature:
BLAST of BQ623221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
MYB_MOUSE3.755e-2243.81Myb proto-oncogene protein OS=Mus musculus GN=Myb ... [more]
MYB_HUMAN3.755e-2243.81Myb proto-oncogene protein OS=Homo sapiens GN=MYB ... [more]
MYB_CHICK3.755e-2243.81Myb proto-oncogene protein OS=Gallus gallus GN=MYB... [more]
MYB_BOVIN3.755e-2243.81Myb proto-oncogene protein OS=Bos taurus GN=MYB PE... [more]
RS2_ORYSJ4.905e-2245.28Protein rough sheath 2 homolog OS=Oryza sativa sub... [more]
MYBA_XENLA4.905e-2242.86Myb-related protein A OS=Xenopus laevis GN=mybl1 P... [more]
MYBB_XENLA1.093e-2140.34Myb-related protein B OS=Xenopus laevis GN=mybl2 P... [more]
RS2_MAIZE1.427e-2143.40Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=... [more]
MYBB_CHICK1.864e-2142.72Myb-related protein B OS=Gallus gallus GN=MYBL2 PE... [more]
MYB_XENLA5.423e-2143.14Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00312 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00312 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623221 ID=BQ623221; Name=BQ623221; organism=Citrus sinensis; type=EST; length=620bp
AGAAGAAGAACTTTAACAAATTTGATATGGGGAGGCCACCTTGTTGTGAC
AAAATTGGTATCAAGAAAGGGCCATGGACTCCAGAAGAAGATATCATTTT
AGTTTCTTATATTCAAGAGCATGGCCCTGGAAATTGGAGGGCTGTTCCCA
CTAATACAGGATTGCTTAGATGCAGCAAAAGTTGCAGGCTTAGATGGACT
AATTACCTAAGGCCAGGGATCAAGCGTGGGAATTTCACTGATCAAGAAGA
GAAGATGATAATTCATCTGCAAGCACTTTTGGGCAACAGATGGGCGGCTA
TTGCTTCTTATCTCCCTCAGAGAACTGACAATGACATCAAGAACTATTGG
AATACTCACTTGAAGAAGAAGGTGAGGAAGCTGCAACTAGCTGCTGCTGG
CTGCTCTGAAGATAATAGCCAATATAGAGATGAGCTAGCTTCAGCTTCTT
CACAGCAAATCTCAAGGGGTCAGTGGGAGAGAAGGCTGCAGACTGATATT
CACATGGCTAAGCAAGCTCTATGTGCGGCCTTGTCACCAGATAAAGCGAG
TATTTTGTCTGAATTGAAAGCCTGCTAATGGGTTCATTTCCTACACAAAA
CCAGCAGTTCAAGCACCAGC
back to top