BQ623224

Overview
NameBQ623224
Unique NameBQ623224
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig760 contig Csv1_Contig760:815..1435. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623224 vs. ExPASy Swiss-Prot
Match: DNJA1_MOUSE (DnaJ homolog subfamily A member 1 OS=Mus musculus GN=Dnaja1 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.268e-35
Identity = 76/162 (46.91%), Postives = 107/162 (66.05%), Query Frame = 2
Query:    2 QNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPES--LSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRR 481
            ++GQKITF GE D+ P    GDI+ VL QK+H  F R+G+DLF+   + L EALCGFQ  I+ LD R ++I S PG++VK    K + +EGMP+Y+RP+ +G+L I F V+FPE+  LSPD+  +LE +LP R  V+    E DE ++  L D +  +E RR
Sbjct:  217 KDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERKEVE----ETDEMDQVELVDFDPNQERRR 374          
BLAST of BQ623224 vs. ExPASy Swiss-Prot
Match: DNJA1_HUMAN (DnaJ homolog subfamily A member 1 OS=Homo sapiens GN=DNAJA1 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.268e-35
Identity = 76/162 (46.91%), Postives = 107/162 (66.05%), Query Frame = 2
Query:    2 QNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPES--LSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRR 481
            ++GQKITF GE D+ P    GDI+ VL QK+H  F R+G+DLF+   + L EALCGFQ  I+ LD R ++I S PG++VK    K + +EGMP+Y+RP+ +G+L I F V+FPE+  LSPD+  +LE +LP R  V+    E DE ++  L D +  +E RR
Sbjct:  217 KDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERKEVE----ETDEMDQVELVDFDPNQERRR 374          
BLAST of BQ623224 vs. ExPASy Swiss-Prot
Match: DNJA1_BOVIN (DnaJ homolog subfamily A member 1 OS=Bos taurus GN=DNAJA1 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.268e-35
Identity = 76/162 (46.91%), Postives = 107/162 (66.05%), Query Frame = 2
Query:    2 QNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPES--LSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRR 481
            ++GQKITF GE D+ P    GDI+ VL QK+H  F R+G+DLF+   + L EALCGFQ  I+ LD R ++I S PG++VK    K + +EGMP+Y+RP+ +G+L I F V+FPE+  LSPD+  +LE +LP R  V+    E DE ++  L D +  +E RR
Sbjct:  217 KDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERKEVE----ETDEMDQVELVDFDPNQERRR 374          
BLAST of BQ623224 vs. ExPASy Swiss-Prot
Match: DNJA2_MOUSE (DnaJ homolog subfamily A member 2 OS=Mus musculus GN=Dnaja2 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.962e-35
Identity = 72/154 (46.75%), Postives = 102/154 (66.23%), Query Frame = 2
Query:    2 QNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPES--LSPDQCKMLETVLPPRTSV-----QLTDMELDECEET 442
            ++GQ+ITF GEAD+AP    GDIV +LQ+KEH  F+R G+DL + + + L EALCGFQF   HLD RQ+++K  PG+V++P   + +  EGMP Y+ PF +G LYI F V FPE+  ++PD+   LE +LP R  V     +  ++EL E + T
Sbjct:  226 KHGQRITFTGEADQAPGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDARQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPEVPNVIGETEEVELQEFDST 379          
BLAST of BQ623224 vs. ExPASy Swiss-Prot
Match: DNAJ1_CERAE (DnaJ homolog subfamily A member 1 OS=Cercopithecus aethiops GN=DNAJA1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.962e-35
Identity = 75/162 (46.30%), Postives = 107/162 (66.05%), Query Frame = 2
Query:    2 QNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPES--LSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRR 481
            ++GQKITF GE D+ P    GDI+ VL QK+H  F R+G+DLF+   + L EALCGFQ  I+ LD R ++I S PG++VK    K + +EGMP+Y+RP+ +G+L I F ++FPE+  LSPD+  +LE +LP R  V+    E DE ++  L D +  +E RR
Sbjct:  217 KDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKINFPENGFLSPDKLSLLEKLLPERKEVE----ETDEMDQVELVDFDPNQERRR 374          
BLAST of BQ623224 vs. ExPASy Swiss-Prot
Match: DNJA2_RAT (DnaJ homolog subfamily A member 2 OS=Rattus norvegicus GN=Dnaja2 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.125e-34
Identity = 71/154 (46.10%), Postives = 101/154 (65.58%), Query Frame = 2
Query:    2 QNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPES--LSPDQCKMLETVLPPRTSV-----QLTDMELDECEET 442
            ++GQ+ITF GEAD+AP    GDIV  +Q+KEH  F+R G+DL + + + L EALCGFQF   HLD RQ+++K  PG+V++P   + +  EGMP Y+ PF +G LYI F V FPE+  ++PD+   LE +LP R  V     +  ++EL E + T
Sbjct:  226 KHGQRITFTGEADQAPGVEPGDIVLFVQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDARQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPEVPNVIGETEEVELQEFDST 379          
BLAST of BQ623224 vs. ExPASy Swiss-Prot
Match: DNJA4_MOUSE (DnaJ homolog subfamily A member 4 OS=Mus musculus GN=Dnaja4 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 71/163 (43.56%), Postives = 104/163 (63.80%), Query Frame = 2
Query:    2 QNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPES--LSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRK 484
            ++GQKI F GE D+ P+   GD++ VL QK+H  F+R+G DL ++  + L+EALCGF+  I  LD R L+I S+ GEV+K    K I +EGMP+Y+ P  +G + I F V FPE   LS ++   LE +LPPR  V++TD ++D+ E   L + N  E+  R+
Sbjct:  218 KDGQKILFHGEGDQEPELDPGDVIIVLDQKDHSVFQRRGQDLIMKMKIQLSEALCGFKKTIKTLDDRVLVISSKSGEVIKHGDLKCIRNEGMPIYKAPLEKGVMIIQFLVVFPEKQWLSQEKLPQLEALLPPRQKVRITD-DMDQVE---LKEFNPNEQSWRQ 376          
BLAST of BQ623224 vs. ExPASy Swiss-Prot
Match: DNJA4_HUMAN (DnaJ homolog subfamily A member 4 OS=Homo sapiens GN=DNAJA4 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.288e-30
Identity = 67/147 (45.58%), Postives = 97/147 (65.99%), Query Frame = 2
Query:    2 QNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPES--LSPDQCKMLETVLPPRTSVQLTDMELDECE 436
            ++GQKI F GE D+ P+   GD++ VL QK+H  F+R+G DL ++  + L+EALCGF+  I  LD R L+I S+ GEV+K    + + DEGMP+Y+ P  +G L I F V FPE   LS ++   LE +LPPR  V++TD ++D+ E
Sbjct:  218 KDGQKILFHGEGDQEPELEPGDVIIVLDQKDHSVFQRRGHDLIMKMKIQLSEALCGFKKTIKTLDNRILVITSKAGEVIKHGDLRCVRDEGMPIYKAPLEKGILIIQFLVIFPEKHWLSLEKLPQLEALLPPRQKVRITD-DMDQVE 363          
BLAST of BQ623224 vs. ExPASy Swiss-Prot
Match: MAS5_SCHPO (Mitochondrial protein import protein mas5 OS=Schizosaccharomyces pombe GN=SPBC1734.11 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.142e-29
Identity = 65/132 (49.24%), Postives = 84/132 (63.64%), Query Frame = 2
Query:    5 NGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPES--LSPDQCKMLETVLPPR 394
            NGQKI F  E ++AP  + GD++FV+ QKEHP+FKR GD LF E  + L  AL G Q V+ HLD R L I   PGE ++P++ K +  +GM + QR    G LYI F VDFPE    +P+Q  +LE  LPPR
Sbjct:  220 NGQKIVFKEEGEQAPGIIPGDVIFVIDQKEHPRFKRSGDHLFYEAHVDLLTALAGGQIVVEHLDDRWLTIPIIPGECIRPNELKVLPGQGM-LSQRHHQPGNLYIRFHVDFPEPNFATPEQLALLEKALPPR 350          
BLAST of BQ623224 vs. ExPASy Swiss-Prot
Match: MAS5_YEAST (Mitochondrial protein import protein MAS5 OS=Saccharomyces cerevisiae GN=YDJ1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.801e-24
Identity = 60/147 (40.82%), Postives = 86/147 (58.50%), Query Frame = 2
Query:    2 QNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPES--LSPDQCKMLETVLPPRTSVQL-TDMELDEC 433
            ++GQ+I F GEAD+APD + GD+VF++ ++ H  FKR GDDL  E  + L  A+ G +F + H+ G  L +   PGEV+ P   K I  +GMP+  +    G L I FT+ FPE+   S +  K LE +LPPR    +     +DEC
Sbjct:  225 KDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI-PKYGGYGNLIIKFTIKFPENHFTSEENLKKLEEILPPRIVPAIPKKATVDEC 370          
The following BLAST results are available for this feature:
BLAST of BQ623224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
DNJA1_MOUSE2.268e-3546.91DnaJ homolog subfamily A member 1 OS=Mus musculus ... [more]
DNJA1_HUMAN2.268e-3546.91DnaJ homolog subfamily A member 1 OS=Homo sapiens ... [more]
DNJA1_BOVIN2.268e-3546.91DnaJ homolog subfamily A member 1 OS=Bos taurus GN... [more]
DNJA2_MOUSE2.962e-3546.75DnaJ homolog subfamily A member 2 OS=Mus musculus ... [more]
DNAJ1_CERAE2.962e-3546.30DnaJ homolog subfamily A member 1 OS=Cercopithecus... [more]
DNJA2_RAT1.125e-3446.10DnaJ homolog subfamily A member 2 OS=Rattus norveg... [more]
DNJA4_MOUSE5.780e-3143.56DnaJ homolog subfamily A member 4 OS=Mus musculus ... [more]
DNJA4_HUMAN1.288e-3045.58DnaJ homolog subfamily A member 4 OS=Homo sapiens ... [more]
MAS5_SCHPO4.142e-2949.24Mitochondrial protein import protein mas5 OS=Schiz... [more]
MAS5_YEAST1.801e-2440.82Mitochondrial protein import protein MAS5 OS=Sacch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00315 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00315 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623224 ID=BQ623224; Name=BQ623224; organism=Citrus sinensis; type=EST; length=621bp
GCAAAATGGACAGAAGATTACGTTCCCTGGAGAAGCTGATGAAGCGCCCG
ACACTGTCACAGGTGACATTGTATTTGTTCTACAACAGAAAGAGCACCCG
AAATTTAAGCGAAAGGGTGATGACCTATTTGTTGAGCACACCCTGTCACT
GACAGAAGCTCTCTGTGGCTTTCAATTTGTAATAACTCATTTGGATGGCC
GGCAACTCCTCATCAAATCCCAGCCTGGGGAAGTAGTCAAGCCGGACCAA
TTCAAGGCCATAAATGATGAAGGAATGCCTATGTATCAGAGGCCATTTAT
GAGGGGCAAACTGTACATTCATTTCACTGTTGACTTCCCTGAGTCACTGA
GCCCAGACCAGTGCAAGATGCTGGAGACCGTACTACCTCCAAGGACCTCA
GTCCAGCTCACCGATATGGAACTGGATGAGTGTGAAGAAACAACCCTGCA
TGATGTGAACATTGAGGAGGAAATGCGAAGGAAGCAACAAGCAGCTCAGG
AGGCATACGATGAAGATGACGATATGCAAGGTGGTGCCCAGAGAGTGCAG
TGTGCTCAGCAGTGATGATGTAGAAGAAAAGGGGTGGCCTGATTTAGTAT
TTTCATTGTTTGGGAGAAAAA
back to top