BQ623226

Overview
NameBQ623226
Unique NameBQ623226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: ASK13_ARATH (SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.633e-21
Identity = 50/88 (56.82%), Postives = 60/88 (68.18%), Query Frame = 2
Query:   53 PPNGGEEDLKSWDTDFVKV--DQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 310
            P    +++LK WD +F+K     +TLFD++LAANYLNIK LLDL CQTVADMI GK P+EIR    I+NDFTP         NQWAFE
Sbjct:   67 PTEESKDELKKWDAEFMKALEQSSTLFDVMLAANYLNIKDLLDLGCQTVADMITGKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE 154          
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: SKP1_YEAST (Suppressor of kinetochore protein 1 OS=Saccharomyces cerevisiae GN=SKP1 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.382e-20
Identity = 45/74 (60.81%), Postives = 57/74 (77.03%), Query Frame = 2
Query:   83 SWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWA 304
            SWD +F+KVDQ  L+++ILAANYLNIK LLD  C+ VA+MI+G++PEEIR+TFNI NDFTP         N+WA
Sbjct:  118 SWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 191          
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: ASK15_ARATH (SKP1-like protein 15 OS=Arabidopsis thaliana GN=ASK15 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.805e-20
Identity = 49/88 (55.68%), Postives = 63/88 (71.59%), Query Frame = 2
Query:   53 PPNGGEEDLKSWDTDFVK-VDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFT-PXXXXXXXXXNQWAFE 310
            P +  +++L +WD +F+K +D  T+F LILAANYLN++GLL LTCQTVAD IK KTPEE+R+ FNI+NDFT           N WAFE
Sbjct:   80 PDDEAKQNLDAWDAEFMKNIDMETIFKLILAANYLNVEGLLGLTCQTVADYIKDKTPEEVRELFNIENDFTHEEEEEAIRKENAWAFE 167          
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: SKP1_SCHPO (Suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe GN=skp1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.021e-20
Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 2
Query:   74 DLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWA 304
            D+  WD  F+ VDQ  LF+++LA+NYL+IK LLD  C+TVA+MI+GK+PE+IRKTFNI NDFTP         N+WA
Sbjct:   82 DIDEWDRKFMAVDQEMLFEIVLASNYLDIKPLLDTGCKTVANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEWA 158          
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: ASK5_ARATH (SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK5 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.021e-20
Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = 2
Query:   68 EEDLKSWDTDFVKVDQAT-LFDLILAANYLNIKGLLDLTCQTV-----ADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 310
            EEDLK WD DF+K  + T LFD+++AANYLNI+ LLDLTC+TV     AD++ GKTP+EIR  FNI+ND T          NQWAF+
Sbjct:   67 EEDLKEWDADFMKTIETTILFDVMMAANYLNIQSLLDLTCKTVSDLLQADLLSGKTPDEIRAHFNIENDLTAEEVAKIREENQWAFQ 153          
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: ASK19_ARATH (SKP1-like protein 19 OS=Arabidopsis thaliana GN=ASK19 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.689e-18
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 2
Query:   68 EEDLKSWDTDFVK-VDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 310
            +E L  WD  F+K  D  T+FD+ILAANYLN++GL DL  +T+AD IK  TPEE+R+ FNI+NDFTP         N W FE
Sbjct:  109 KEKLNEWDAKFMKDFDIKTIFDIILAANYLNVQGLFDLCSKTIADYIKDMTPEEVRELFNIENDFTPEEEEAIRNENAWTFE 190          
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: ASK8_ARATH (SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.916e-18
Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = 2
Query:   68 EEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 310
            ++DL+ WD +F++ D++T+F L  AAN+LN K LL L  QTVADMIKG TP+++R+ FNI+ND TP         N+WAFE
Sbjct:   72 DDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE 152          
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: ASK16_ARATH (SKP1-like protein 16 OS=Arabidopsis thaliana GN=ASK16 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.420e-18
Identity = 42/82 (51.22%), Postives = 57/82 (69.51%), Query Frame = 2
Query:   68 EEDLKSWDTDFVK-VDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 310
            + +L++WD +F+K  D  T+  LILA NYLN++ LL LTCQTVAD +K  +PEE+R+ FNI+ND+TP         N WAFE
Sbjct:   86 KNELRTWDAEFMKEFDMETVMKLILAVNYLNVQDLLGLTCQTVADHMKDMSPEEVRELFNIENDYTPEEEDAIRKENAWAFE 167          
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: ASK18_ARATH (SKP1-like protein 18 OS=Arabidopsis thaliana GN=ASK18 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 8.385e-18
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 2
Query:   68 EEDLKSWDTDFV-KVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAF 307
            +++L SWD  F+ K+D  T+F +ILAANYLN +GLL    QTVAD IK KTPEE+R+ FNI+NDFTP         N W F
Sbjct:   76 KKNLDSWDAKFMEKLDLETIFKIILAANYLNFEGLLGFASQTVADYIKDKTPEEVREIFNIENDFTPEEEEEIRKENAWTF 156          
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: ASK17_ARATH (SKP1-like protein 17 OS=Arabidopsis thaliana GN=ASK17 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.809e-12
Identity = 36/81 (44.44%), Postives = 50/81 (61.73%), Query Frame = 2
Query:   68 EEDLKSWDTDFVK-VDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAF 307
            + +  +WD +FVK +D  TLF L+ AA+YL + GL +L  Q +AD    KT  EIR+ FNI+ND+TP         N+WAF
Sbjct:   69 KNEFVTWDAEFVKNIDMDTLFKLLDAADYLIVIGLKNLIAQAIADYTADKTVNEIRELFNIENDYTPEEEEELRKKNEWAF 149          
The following BLAST results are available for this feature:
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
ASK13_ARATH1.633e-2156.82SKP1-like protein 13 OS=Arabidopsis thaliana GN=AS... [more]
SKP1_YEAST1.382e-2060.81Suppressor of kinetochore protein 1 OS=Saccharomyc... [more]
ASK15_ARATH1.805e-2055.68SKP1-like protein 15 OS=Arabidopsis thaliana GN=AS... [more]
SKP1_SCHPO4.021e-2057.14Suppressor of kinetochore protein 1 OS=Schizosacch... [more]
ASK5_ARATH4.021e-2056.32SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK... [more]
ASK19_ARATH1.689e-1853.66SKP1-like protein 19 OS=Arabidopsis thaliana GN=AS... [more]
ASK8_ARATH4.916e-1851.85SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK... [more]
ASK16_ARATH6.420e-1851.22SKP1-like protein 16 OS=Arabidopsis thaliana GN=AS... [more]
ASK18_ARATH8.385e-1854.32SKP1-like protein 18 OS=Arabidopsis thaliana GN=AS... [more]
ASK17_ARATH1.809e-1244.44SKP1-like protein 17 OS=Arabidopsis thaliana GN=AS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00317 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00317 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623226 ID=BQ623226; Name=BQ623226; organism=Citrus sinensis; type=EST; length=581bp
GTTCCTGCGACCCAGGATAGCAACAACAGCGGCGCCAACAGCAACGGTAC
TGCCACCTAACGGTGGTGAGGAGGATCTCAAAAGCTGGGACACTGACTTC
GTCAAAGTTGACCAGGCCACTCTCTTCGATCTCATCCTGGCAGCAAACTA
CCTGAACATCAAGGGGCTGCTGGACCTTACCTGCCAGACTGTTGCTGACA
TGATCAAGGGAAAGACTCCGGAGGAGATTCGAAAGACCTTTAACATCAAG
AATGACTTCACTCCAGAGGAGGAAGAAGAGGTCCGTAGGGAGAACCAGTG
GGCTTTTGAGTGAAAGTTGTTTCAACAAAGACAATTTTTCATTATCATTG
TCTTGCAATCTTGCTGTCTTTAACATGTAGATGTAGTTTTCTAGGGCTTA
TCTTTTCCTTTCTCATTGTACTTTCGAACTTATTAGCTGTTTGAAATGTA
AATAATAGTCTGTTCTGGTGGAACTGGTAGCAGTTGGTCTGGTCCATCCT
TTCCTGCTTGCTATCAAGACCGGTGGATCATTGAATTTGACTAATTCTTT
TGGTTCCAAACAAAAGAAAAAAAAAAAAAAA
back to top