BQ623227

Overview
NameBQ623227
Unique NameBQ623227
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig332 contig Csv1_Contig332:488..1092. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of BQ623227 vs. ExPASy Swiss-Prot
Match: SC132_CANGA (Protein transport protein SEC13-2 OS=Candida glabrata GN=SEC132 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.158e-22
Identity = 58/160 (36.25%), Postives = 91/160 (56.88%), Query Frame = 3 
Query:   42 TSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV--AREGDQWEGKVLHD--FKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGQWQQV 509
            T  +D AH  GV S+SWAP     +         V++  SGG DN VK+WK  +          L+ H D V  V W+P   L +S +AS S D + ++WT   + + + W+   +++  F+  +  VSWSL+GN+LAV+D + NVT+W+E+ DG+W++V
Sbjct:  143 TKILDNAHKFGVNSISWAPLMKTDSSDDGDETTAVKQFISGGNDNLVKIWKFDDDQETYVVADTLEGHKDAVTAVDWSPTT-LLQSYVASVSNDKQCLVWTQDHSSKKNDWKKISVNEGKFEQKLGSVSWSLSGNLLAVSDDDKNVTIWKESGDGKWEEV 301
The following BLAST results are available for this feature:
BLAST of BQ623227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
SC132_CANGA6.158e-2236.25Protein transport protein SEC13-2 OS=Candida glabr... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00318 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00318 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623227 ID=BQ623227; Name=BQ623227; organism=Citrus sinensis; type=EST; length=605bp
ACATATCAGTTTTTACGGCTAGAGCTGATGGCGGCTGGGATACATCTCGG
ATTGACCAAGCTCATCCGGTTGGTGTGACTTCAGTTTCATGGGCCCCATC
AACAGCTCCCGGTGCACTTGTGGGTTCTGGTTTTCTTGACCCAGTTCAGA
AGCTTTGTTCAGGTGGTTGTGATAATACCGTGAAGGTGTGGAAGCTGTAC
AATGGAATTTGGAAGATGGACTGCTTTCCAGCTCTTCAAATGCATACTGA
TTGGGTTAGAGATGTTGCTTGGGCTCCCAACTTGGGGCTTCCAAAATCTA
CTATTGCAAGTGCATCGGAGGATGGGAAAGTTATTATATGGACTGTGGCC
AGGGAAGGAGATCAATGGGAAGGTAAGGTGTTGCATGACTTCAAGACCCC
TGTTTATAGAGTCAGCTGGTCACTGACTGGAAACATATTGGCTGTGGCTG
ATGGAAACAACAATGTAACACTGTGGGAAGAAGCAGTGGATGGGCAGTGG
CAACAGGTGACTGCAGTTGGGCCGTAAGACTCTTTTAAGTTTTTCAATTT
ATTATCATGAAATACAAGATTGCATTTTAGAACCTCTTAAAAAAAAAAAA
AAAAA
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