BQ623229

Overview
NameBQ623229
Unique NameBQ623229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11438 contig Csv1_Contig11438:126..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623229 vs. ExPASy Swiss-Prot
Match: UB2V2_MOUSE (Ubiquitin-conjugating enzyme E2 variant 2 OS=Mus musculus GN=Ube2v2 PE=2 SV=4)

HSP 1 Score: 141.739 bits (356), Expect = 3.289e-33
Identity = 63/131 (48.09%), Postives = 90/131 (68.70%), Query Frame = 3
Query:   69 PRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 461
            PRNFR       G+KG+GDGTVS+G++D +D+ +  WTG +IGP  T +E RIY LK+ C   YPE PPSVRF ++INM  +N+ +G+V+ +   +LA WQ  Y+++ IL +L++ M +  N KL QPPEG
Sbjct:   10 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGSKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVILQELRRLMMSKENMKLPQPPEG 140          
BLAST of BQ623229 vs. ExPASy Swiss-Prot
Match: UB2V1_PONAB (Ubiquitin-conjugating enzyme E2 variant 1 OS=Pongo abelii GN=UBE2V1 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.289e-33
Identity = 63/131 (48.09%), Postives = 88/131 (67.18%), Query Frame = 3
Query:   69 PRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 461
            PRNFR       G+KG+GDGTVS+G++D +D+ +  WTG +IGP  T++E RIY LK+ C    PE PP VRF ++INM  VN   GVV+P+   +LA WQ  Y+++ +L +L++ M +  N KL QPPEG
Sbjct:   12 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKCPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 142          
BLAST of BQ623229 vs. ExPASy Swiss-Prot
Match: MMS2_YEAST (Ubiquitin-conjugating enzyme variant MMS2 OS=Saccharomyces cerevisiae GN=MMS2 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.289e-33
Identity = 68/134 (50.75%), Postives = 86/134 (64.18%), Query Frame = 3
Query:   69 PRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 470
            PRNFR      +GEKG G  + SYG+ D DDI M  W GT++GP ++ HE RIY L + C  +YP+ PP V F S+IN+ CVN  TG V+   F  L +W+R YTME +L  L+KEMA P N+KL QP EG  F
Sbjct:    5 PRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQ-TDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 137          
BLAST of BQ623229 vs. ExPASy Swiss-Prot
Match: UB2V2_RAT (Ubiquitin-conjugating enzyme E2 variant 2 OS=Rattus norvegicus GN=Ube2v2 PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 4.296e-33
Identity = 62/131 (47.33%), Postives = 90/131 (68.70%), Query Frame = 3
Query:   69 PRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 461
            PRNFR       G+KG+GDGTVS+G++D +D+ +  WTG +IGP  T +E RIY LK+ C   YPE PPSVRF ++INM  +N+ +G+V+ +   +LA WQ  Y+++ +L +L++ M +  N KL QPPEG
Sbjct:   10 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGSKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 140          
BLAST of BQ623229 vs. ExPASy Swiss-Prot
Match: UB2V2_PONAB (Ubiquitin-conjugating enzyme E2 variant 2 OS=Pongo abelii GN=UBE2V2 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33
Identity = 62/131 (47.33%), Postives = 90/131 (68.70%), Query Frame = 3
Query:   69 PRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 461
            PRNFR       G+KG+GDGTVS+G++D +D+ +  WTG +IGP  T +E RIY LK+ C   YPE PPSVRF ++INM  +N+ +G+V+ +   +LA WQ  Y+++ +L +L++ M +  N KL QPPEG
Sbjct:   10 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 140          
BLAST of BQ623229 vs. ExPASy Swiss-Prot
Match: UB2V2_HUMAN (Ubiquitin-conjugating enzyme E2 variant 2 OS=Homo sapiens GN=UBE2V2 PE=1 SV=4)

HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33
Identity = 62/131 (47.33%), Postives = 90/131 (68.70%), Query Frame = 3
Query:   69 PRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 461
            PRNFR       G+KG+GDGTVS+G++D +D+ +  WTG +IGP  T +E RIY LK+ C   YPE PPSVRF ++INM  +N+ +G+V+ +   +LA WQ  Y+++ +L +L++ M +  N KL QPPEG
Sbjct:   10 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 140          
BLAST of BQ623229 vs. ExPASy Swiss-Prot
Match: UB2V2_BOVIN (Ubiquitin-conjugating enzyme E2 variant 2 OS=Bos taurus GN=UBE2V2 PE=2 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33
Identity = 62/131 (47.33%), Postives = 90/131 (68.70%), Query Frame = 3
Query:   69 PRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 461
            PRNFR       G+KG+GDGTVS+G++D +D+ +  WTG +IGP  T +E RIY LK+ C   YPE PPSVRF ++INM  +N+ +G+V+ +   +LA WQ  Y+++ +L +L++ M +  N KL QPPEG
Sbjct:   10 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 140          
BLAST of BQ623229 vs. ExPASy Swiss-Prot
Match: UB2V2_CHICK (Ubiquitin-conjugating enzyme E2 variant 2 OS=Gallus gallus GN=UBE2V2 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.632e-32
Identity = 61/131 (46.56%), Postives = 89/131 (67.94%), Query Frame = 3
Query:   69 PRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 461
            PRNFR       G+KG+GDGTVS+G++D +D+ +  WTG +IGP  T +E RIY LK+ C   YPE PP+VRF ++INM  +N+  G+V+ +   +LA WQ  Y+++ +L +L++ M +  N KL QPPEG
Sbjct:    9 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPTVRFVTKINMNGINNSNGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 139          
BLAST of BQ623229 vs. ExPASy Swiss-Prot
Match: UB2V2_DANRE (Ubiquitin-conjugating enzyme E2 variant 2 OS=Danio rerio GN=ube2v2 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.203e-32
Identity = 60/131 (45.80%), Postives = 89/131 (67.94%), Query Frame = 3
Query:   69 PRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 461
            PRNFR       G+KG+GDGTVS+G++D +D+ +  WTG +IGP  T +E RIY LK+ C   YPE PP+VRF ++I+M  +N+  G+V+ +   +LA WQ  Y+++ +L +L++ M +  N KL QPPEG
Sbjct:   10 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPARTNYENRIYSLKVECGPKYPEVPPTVRFVTKISMNGINNSNGMVDARSIPILAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 140          
BLAST of BQ623229 vs. ExPASy Swiss-Prot
Match: UB2V2_XENLA (Ubiquitin-conjugating enzyme E2 variant 2 OS=Xenopus laevis GN=ube2v2 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.079e-31
Identity = 59/131 (45.04%), Postives = 88/131 (67.18%), Query Frame = 3
Query:   69 PRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 461
            PRNFR       G+KG+GDGTVS+G++D +D+ +  WTG +IGP  T +E RIY L+L C   YPE PP+VRF +++NM  +N+  G V+ +   +LA WQ  ++++ +L +L++ M +  N KL QPPEG
Sbjct:   10 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLRLECGPKYPEAPPTVRFVTKMNMNGINNSNGTVDYRSIPVLAKWQNSFSIKVLLQELRRLMMSKENMKLPQPPEG 140          
The following BLAST results are available for this feature:
BLAST of BQ623229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
UB2V2_MOUSE3.289e-3348.09Ubiquitin-conjugating enzyme E2 variant 2 OS=Mus m... [more]
UB2V1_PONAB3.289e-3348.09Ubiquitin-conjugating enzyme E2 variant 1 OS=Pongo... [more]
MMS2_YEAST3.289e-3350.75Ubiquitin-conjugating enzyme variant MMS2 OS=Sacch... [more]
UB2V2_RAT4.296e-3347.33Ubiquitin-conjugating enzyme E2 variant 2 OS=Rattu... [more]
UB2V2_PONAB5.610e-3347.33Ubiquitin-conjugating enzyme E2 variant 2 OS=Pongo... [more]
UB2V2_HUMAN5.610e-3347.33Ubiquitin-conjugating enzyme E2 variant 2 OS=Homo ... [more]
UB2V2_BOVIN5.610e-3347.33Ubiquitin-conjugating enzyme E2 variant 2 OS=Bos t... [more]
UB2V2_CHICK1.632e-3246.56Ubiquitin-conjugating enzyme E2 variant 2 OS=Gallu... [more]
UB2V2_DANRE6.203e-3245.80Ubiquitin-conjugating enzyme E2 variant 2 OS=Danio... [more]
UB2V2_XENLA3.079e-3145.04Ubiquitin-conjugating enzyme E2 variant 2 OS=Xenop... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00320 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00320 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623229 ID=BQ623229; Name=BQ623229; organism=Citrus sinensis; type=EST; length=678bp
TCTCAGCTTACCCATCATCAAAATCGCAACCATGACGCGTAGGCTCAGGA
GGATCCAGTGTCGTGGTCCCTCGGAACTTCAGATTGTTGGAGGAACTTGA
ACGCGGAGAAAAAGGTATTGGAGATGGCACTGTCAGCTATGGAATGGATG
ATGGAGATGACATTTACATGCGCTCTTGGACTGGCACCGTTATCGGTCCT
CACAATACTGTACATGAAGGTAGAATTTATCAGTTGAAGCTGTTCTGTGA
TAAAGATTATCCAGAGAAGCCACCAAGTGTTCGTTTTCATTCACGAATCA
ACATGACTTGTGTTAACCATGAAACTGGAGTGGTGGAACCTAAAAAGTTT
GGACTTCTTGCGAATTGGCAGCGAGAGTACACCATGGAGGATATACTCAC
ACAACTGAAAAAGGAGATGGCAGCCCCACACAATCGGAAGCTGGTTCAAC
CTCCTGAGGGTACCTACTTCTAGCTTCTAAGATCATATAGGTATCATGGG
GCTTATTGCATATTACAATATGCAATATATAGATTGTATTCCTGTGTTGA
TGTTAAGAACATAGAAGGAAATGCCTGACAGGGCCTTTTCCAATTACATC
TCCATGGCTTCATCATCGGTTTGGCTCTTTCTTTTTCTTTTTTCAACTGT
ATGGAAGGATGCTGTTGATTAATGGGAT
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