BQ623230

Overview
NameBQ623230
Unique NameBQ623230
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9755 contig Csv1_Contig9755:181..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: RPN11_ENCCU (26S proteasome regulatory subunit RPN11 OS=Encephalitozoon cuniculi GN=RPN11 PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 2.095e-65
Identity = 120/162 (74.07%), Postives = 139/162 (85.80%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRK 486
            G+P+EVMGLMLGEFVDEYTV+VVDVFAMPQSGT V+VE+VD +FQ  M+ +LK TGR E VVGWYHSHPGFGCWLS VDI+TQQSFE L +RAVAVVVDPIQSVKGKVVIDAFRLI+ Q  +LG EPRQ TSN+G+L  P++ ++IHGLN+HYYS  I  RK
Sbjct:   38 GIPLEVMGLMLGEFVDEYTVKVVDVFAMPQSGTNVTVESVDPIFQMEMMSILKATGRHETVVGWYHSHPGFGCWLSTVDISTQQSFEKLCKRAVAVVVDPIQSVKGKVVIDAFRLIDNQLGVLGGEPRQVTSNIGYLKTPTLISIIHGLNKHYYSFNITCRK 199          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: YPT5_CAEEL (Uncharacterized protein F37A4.5 OS=Caenorhabditis elegans GN=F37A4.5 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 7.451e-63
Identity = 113/166 (68.07%), Postives = 136/166 (81.93%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMML-----GQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYR 483
            G+P+EVMGLMLG+FVD+YT+ V DVFAMPQSGT V+VE+VD V+QT  +D+LK  GR E VVGWYHSHPGFGCWLS VD+NTQQSFEAL+ RAVAVVVDPIQSVKGKV++DAFR +NP  + +       EPRQTTSNLGHL KPS+ +++HGL   YYS+ + YR
Sbjct:   46 GIPLEVMGLMLGDFVDDYTINVTDVFAMPQSGTSVTVESVDPVYQTKHMDLLKLVGRTENVVGWYHSHPGFGCWLSSVDVNTQQSFEALHPRAVAVVVDPIQSVKGKVMLDAFRSVNPLNLQIRPLAPTAEPRQTTSNLGHLTKPSLISVVHGLGTKYYSLNVAYR 211          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: CSN5_DROME (COP9 signalosome complex subunit 5 OS=Drosophila melanogaster GN=CSN5 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.167e-25
Identity = 65/166 (39.16%), Postives = 97/166 (58.43%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQ-TTSNLGHLNKPSIQALIHGLNRHYYSIAINYRK 486
            G  +EVMGLMLG+ V++ T+ V+D FA+P  GT   V+ +A  + + T  ++  K+ GR E  VGWYHSHPG+GCWLSG+D++TQ   +   +  VA+VVDP+++V  GKV + AFR          +EP +  T  L  +    +        + YY + I+Y K
Sbjct:   69 GGTLEVMGLMLGK-VEDNTMIVMDAFALPVEGTETRVNAQAQAYEYMTAYMEAAKEVGRMEHAVGWYHSHPGYGCWLSGIDVSTQMLNQTYQEPFVAIVVDPVRTVSAGKVCLGAFRTYPKGYKPPNEEPSEYQTIPLNKIEDFGVHC------KQYYPLEISYFK 227          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: CSN5_USTMA (COP9 signalosome complex subunit 5 OS=Ustilago maydis GN=RRI1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.591e-23
Identity = 55/114 (48.25%), Postives = 76/114 (66.67%), Query Frame = 1
Query:   13 EVMGLMLGEF-VDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQ--TNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSV-KGKVVIDAFR 342
            E+MGLM G+  V+  T+ V+D FA+P  GT   V A +  ++     LD  K+ GR E VVGWYHSHPG+GCWLSG+D+NTQ++ +      VA+V+DP +++  GKV I AFR
Sbjct:   82 EIMGLMQGKIDVENRTLYVMDSFALPVEGTETRVNAQNEAYEYMVQYLDHSKEVGRLENVVGWYHSHPGYGCWLSGIDVNTQRTNQQFQDPFVAIVIDPNRTISSGKVDIGAFR 195          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: CSN5_XENTR (COP9 signalosome complex subunit 5 OS=Xenopus tropicalis GN=cops5 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.538e-23
Identity = 54/117 (46.15%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 342
            G  +EVMGLMLG+ VD  T+ ++D FA+P  GT   V+ +A  + +    ++  KQ GR E  +GWYHSHPG+GCWLSG+D++TQ   +   +  VAVV+DP +++  GKV + AFR
Sbjct:   72 GGNLEVMGLMLGK-VDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFR 187          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: CSN5_XENLA (COP9 signalosome complex subunit 5 OS=Xenopus laevis GN=cops5 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.538e-23
Identity = 54/117 (46.15%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 342
            G  +EVMGLMLG+ VD  T+ ++D FA+P  GT   V+ +A  + +    ++  KQ GR E  +GWYHSHPG+GCWLSG+D++TQ   +   +  VAVV+DP +++  GKV + AFR
Sbjct:   70 GGNLEVMGLMLGK-VDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFR 185          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: CSN5_MOUSE (COP9 signalosome complex subunit 5 OS=Mus musculus GN=Cops5 PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 7.538e-23
Identity = 54/117 (46.15%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 342
            G  +EVMGLMLG+ VD  T+ ++D FA+P  GT   V+ +A  + +    ++  KQ GR E  +GWYHSHPG+GCWLSG+D++TQ   +   +  VAVV+DP +++  GKV + AFR
Sbjct:   72 GGNLEVMGLMLGK-VDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFR 187          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: CSN5_HUMAN (COP9 signalosome complex subunit 5 OS=Homo sapiens GN=COPS5 PE=1 SV=4)

HSP 1 Score: 106.301 bits (264), Expect = 7.538e-23
Identity = 54/117 (46.15%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 342
            G  +EVMGLMLG+ VD  T+ ++D FA+P  GT   V+ +A  + +    ++  KQ GR E  +GWYHSHPG+GCWLSG+D++TQ   +   +  VAVV+DP +++  GKV + AFR
Sbjct:   72 GGNLEVMGLMLGK-VDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFR 187          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: CSN5_DICDI (COP9 signalosome complex subunit 5 OS=Dictyostelium discoideum GN=csn5 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.538e-23
Identity = 63/166 (37.95%), Postives = 97/166 (58.43%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQ--TNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAL-IHGLNRHYYSIAINYRK 486
            G  +EVMG+++G+ V+  T+ ++D FA+P  GT   V A    ++     L+++KQTGR E  +GWYHSHPG+GCWLSG+D+ TQ   +  ++  + +V+DP ++V  GKV I AFR   PQ     + P +  S    +    I+   +H   + YYS+ I Y K
Sbjct:   71 GGKLEVMGMLMGK-VENNTMIIMDSFALPVEGTETRVNAQVEAYEYMVEYLELIKQTGRLENALGWYHSHPGYGCWLSGIDVGTQSVNQQYSEPWLGIVIDPTRTVSAGKVEIGAFRTY-PQGY---KPPNEGPSEYQSIPLSKIEDFGVH--CKQYYSLEITYFK 229          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: CSN5_DANRE (COP9 signalosome complex subunit 5 OS=Danio rerio GN=cops5 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.538e-23
Identity = 54/117 (46.15%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 342
            G  +EVMGLMLG+ VD  T+ ++D FA+P  GT   V+ +A  + +    ++  KQ GR E  +GWYHSHPG+GCWLSG+D++TQ   +   +  VAVV+DP +++  GKV + AFR
Sbjct:   70 GGNLEVMGLMLGK-VDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFR 185          
The following BLAST results are available for this feature:
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RPN11_ENCCU2.095e-6574.0726S proteasome regulatory subunit RPN11 OS=Encepha... [more]
YPT5_CAEEL7.451e-6368.07Uncharacterized protein F37A4.5 OS=Caenorhabditis ... [more]
CSN5_DROME6.167e-2539.16COP9 signalosome complex subunit 5 OS=Drosophila m... [more]
CSN5_USTMA2.591e-2348.25COP9 signalosome complex subunit 5 OS=Ustilago may... [more]
CSN5_XENTR7.538e-2346.15COP9 signalosome complex subunit 5 OS=Xenopus trop... [more]
CSN5_XENLA7.538e-2346.15COP9 signalosome complex subunit 5 OS=Xenopus laev... [more]
CSN5_MOUSE7.538e-2346.15COP9 signalosome complex subunit 5 OS=Mus musculus... [more]
CSN5_HUMAN7.538e-2346.15COP9 signalosome complex subunit 5 OS=Homo sapiens... [more]
CSN5_DICDI7.538e-2337.95COP9 signalosome complex subunit 5 OS=Dictyosteliu... [more]
CSN5_DANRE7.538e-2346.15COP9 signalosome complex subunit 5 OS=Danio rerio ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00321 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00321 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623230 ID=BQ623230; Name=BQ623230; organism=Citrus sinensis; type=EST; length=488bp
GGTGTGCCCATGGAGGTCATGGGTCTGATGCTGGGAGAGTTTGTGGACGA
GTACACAGTTCGGGTTGTTGATGTGTTTGCTATGCCACAAAGTGGAACTG
GTGTTAGTGTTGAAGCTGTTGATCATGTGTTCCAGACTAACATGCTTGAC
ATGCTCAAGCAGACTGGAAGACCAGAAATGGTTGTTGGATGGTATCACTC
ACATCCTGGATTTGGTTGCTGGCTCTCTGGTGTTGACATAAACACACAGC
AGAGTTTTGAAGCTTTGAATCAAAGGGCTGTTGCTGTGGTTGTGGATCCA
ATCCAGAGCGTGAAAGGGAAGGTAGTGATTGATGCCTTCCGCTTGATTAA
TCCCCAAACCATGATGCTTGGCCAAGAACCACGGCAGACAACTTCCAATC
TTGGTCATCTTAATAAGCCATCCATCCAAGCATTGATCCATGGCTTGAAT
AGACATTATTATTCTATTGCCATCAATTACAGGAAGGA
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