BQ623230

Overview
NameBQ623230
Unique NameBQ623230
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9755 contig Csv1_Contig9755:181..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: CSN5_CAEEL (COP9 signalosome complex subunit 5 OS=Caenorhabditis elegans GN=csn-5 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.422e-21
Identity = 52/117 (44.44%), Postives = 77/117 (65.81%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 342
            G  +E+MGL+ G  +D  +  ++DVFA+P  GT   V+ +A  + + T   +M    GR E VVGWYHSHPG+GCWLSG+D++TQ   +   +  VA+V+DP++++  GKV I AFR
Sbjct:   73 GGNLEIMGLLQGR-IDANSFIILDVFALPVEGTETRVNAQAQAYEYMTVYSEMCDTEGRKEKVVGWYHSHPGYGCWLSGIDVSTQTLNQKFQEPWVAIVIDPLRTMSAGKVDIGAFR 188          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: CSN5A_ARATH (COP9 signalosome complex subunit 5a OS=Arabidopsis thaliana GN=CSN5A PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.857e-21
Identity = 55/117 (47.01%), Postives = 74/117 (63.25%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQ--TNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 342
            G  +E+MGLM G+  D  T+ V+D FA+P  GT   V A D  ++         K  GR E VVGWYHSHPG+GCWLSG+D++TQ+  +   +  +AVV+DP ++V  GKV I AFR
Sbjct:   76 GGTIEIMGLMQGK-TDGDTIIVMDAFALPVEGTETRVNAQDDAYEYMVEYSQTNKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQRLNQQHQEPFLAVVIDPTRTVSAGKVEIGAFR 191          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: CSN5_GIBZE (COP9 signalosome complex subunit 5 OS=Gibberella zeae GN=RRI1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.425e-21
Identity = 63/166 (37.95%), Postives = 89/166 (53.61%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHV--FQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSV-KGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLN-RHYYSIAINYRK 486
            G  +EVMGLM G +    T  V D F +P  GT   V A D    +    LD+ +  GR E VVGWYHSHPG+GCWLSG+D++T+   +      +AVV+DP +++  GKV I AFR     T     +P    ++ G    P  +A   G +   YYS+ +++ K
Sbjct:   69 GGNLEVMGLMQG-YTQGDTFIVTDAFRLPVEGTETRVNAQDEANEYIVEYLDLCRAQGRQENVVGWYHSHPGYGCWLSGIDVDTEAMQQQFQDPFLAVVIDPDRTINSGKVDIGAFR-----TYPADYKPSGGVTSDGFQAVPLAKAAEFGAHASRYYSLEVSHFK 228          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: CSN5_YARLI (COP9 signalosome complex subunit 5 OS=Yarrowia lipolytica GN=RRI1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.167e-21
Identity = 61/166 (36.75%), Postives = 90/166 (54.22%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDH--VFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGL-NRHYYSIAINYRK 486
            G  +EVMG+M G+ +   T  V+D + +P  GT   V A      F    L  LK  GR E +VGWYHSHPG+GCWLSG+D++TQ   +   +  +AVVVDP +++  GKV I AFR          + P++ T      + P  +A  +G  +  YY + +++ K
Sbjct:   73 GGAIEVMGMMTGKILPN-TFVVMDCYPLPVEGTETRVNAQQEGIEFMVEYLQGLKDVGRRENIVGWYHSHPGYGCWLSGIDVDTQFQNQQFQEPFLAVVVDPNRTISAGKVEIGAFRTYPKDY----KPPKKATKQNQDQSVPLSKAKDYGAHSERYYELDVSFFK 233          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: CSN5_DEBHA (COP9 signalosome complex subunit 5 OS=Debaryomyces hansenii GN=RRI1 PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 4.136e-21
Identity = 50/117 (42.74%), Postives = 76/117 (64.96%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSV-KGKVVIDAFR 342
            G  +EVMG+M G+ +   ++ V+DV+ +P  GT   V+ +A  + +    L+  KQ GR E +VGWYHSHPG+GCWLSG+D+ TQ   +      +A+V+DP+++  +GKV I AFR
Sbjct:   80 GGAIEVMGMMTGKIIKN-SIIVMDVYPLPVEGTETRVNAQAEGYEYMVQYLENSKQVGRDENIVGWYHSHPGYGCWLSGIDVATQSLNQNFQDPYLAIVIDPMKTEDQGKVEIGAFR 195          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: CSN5_NEUCR (COP9 signalosome complex subunit 5 OS=Neurospora crassa GN=rri-1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.402e-21
Identity = 51/119 (42.86%), Postives = 74/119 (62.18%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHV--FQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSV-KGKVVIDAFRLI 348
            G  +EVMG+M G +++  T+ + D + +P  GT   V A D    +    L + ++  R E V+GWYHSHPG+GCWLSG+D+ TQ   +  N+  VAVV+DP ++V + KV I AFR I
Sbjct:   61 GGNLEVMGMMQG-YIEGSTMVITDAYRLPVEGTETRVNAQDEANEYMVEYLRLCREENRLENVIGWYHSHPGYGCWLSGIDVGTQSLQQQFNEPFVAVVIDPDRTVSQNKVEIGAFRTI 178          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: CSN5_EMENI (COP9 signalosome complex subunit 5 OS=Emericella nidulans GN=rri1 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 9.215e-21
Identity = 64/166 (38.55%), Postives = 89/166 (53.61%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHV--FQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLN-RHYYSIAINYRK 486
            G  +EVMGLM G ++   T  V D F +P  GT   V A D    +  + L   ++ GR E  VGWYHSHPG+GCWLSG+D++T Q  + ++   VAVV+DP +++  GKV I AFR          +E  +       LNK    A   G +  HYYS+ ++  K
Sbjct:   68 GGSLEVMGLMQG-YILPNTFVVTDAFRLPVEGTETRVNAQDEANEYMVSYLQSCREAGRMENAVGWYHSHPGYGCWLSGIDVST-QDMQQMSGPFVAVVIDPERTISAGKVDIGAFRTFPKDYTPPKEEQEEDEYQTVPLNK----AEDFGAHASHYYSLEVSLFK 227          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: CSN5_ASPFU (COP9 signalosome complex subunit 5 OS=Aspergillus fumigatus GN=csn5 PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.203e-20
Identity = 63/166 (37.95%), Postives = 87/166 (52.41%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHV--FQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRH-YYSIAINYRK 486
            G  +EVMGLM G  + E T  V D F +P  GT   V A +    +  + L   +  GR E  VGWYHSHPG+GCWLSG+D+ T Q  + L    VAVV+DP +++  GKV I AFR            P++   +  +   P  +A   G   H YYS+ +++ K
Sbjct:   68 GGSLEVMGLMQGYILPE-TFVVTDAFRLPVEGTETRVNAQEEANEYMVSYLQSCRDAGRMENAVGWYHSHPGYGCWLSGIDVTT-QDMQQLGGPFVAVVIDPERTISAGKVDIGAFRTFPKDY----TPPKEGNEDEDYQTIPLSKAEDFGAYAHQYYSLEVSFFK 227          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: CSN5B_ARATH (COP9 signalosome complex subunit 5b OS=Arabidopsis thaliana GN=CSN5B PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.572e-20
Identity = 53/117 (45.30%), Postives = 72/117 (61.54%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQ--TNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 342
            G  +E+MGLM G+   + T+ V+D FA+P  GT   V A    ++         K  GR E VVGWYHSHPG+GCWLSG+D++TQ   +   +  +AVV+DP ++V  GKV I AFR
Sbjct:   76 GGTIEIMGLMQGKTEGD-TIIVMDAFALPVEGTETRVNAQSDAYEYMVEYSQTSKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVIDPTRTVSAGKVEIGAFR 191          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: CSN5_CRYNE (COP9 signalosome complex subunit 5 OS=Cryptococcus neoformans GN=RRI1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 7.801e-20
Identity = 50/113 (44.25%), Postives = 72/113 (63.72%), Query Frame = 1
Query:   13 EVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHV--FQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 342
            E+MG+M G+ V + T  ++DV A+P  GT   V A +    +  N      + G+ E++ GWYHSHPG+GCWLSG+D+NTQ + +  N   +AVV+DP ++V  GKV I AFR
Sbjct:   72 EIMGIMYGK-VRDGTFWIMDVAALPVQGTETRVNAGNEAMEYMVNFQTANAEAGKGELLRGWYHSHPGYGCWLSGIDVNTQLNNQKFNDPYLAVVIDPNRTVSAGKVEIGAFR 183          
The following BLAST results are available for this feature:
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
CSN5_CAEEL1.422e-2144.44COP9 signalosome complex subunit 5 OS=Caenorhabdit... [more]
CSN5A_ARATH1.857e-2147.01COP9 signalosome complex subunit 5a OS=Arabidopsis... [more]
CSN5_GIBZE2.425e-2137.95COP9 signalosome complex subunit 5 OS=Gibberella z... [more]
CSN5_YARLI3.167e-2136.75COP9 signalosome complex subunit 5 OS=Yarrowia lip... [more]
CSN5_DEBHA4.136e-2142.74COP9 signalosome complex subunit 5 OS=Debaryomyces... [more]
CSN5_NEUCR5.402e-2142.86COP9 signalosome complex subunit 5 OS=Neurospora c... [more]
CSN5_EMENI9.215e-2138.55COP9 signalosome complex subunit 5 OS=Emericella n... [more]
CSN5_ASPFU1.203e-2037.95COP9 signalosome complex subunit 5 OS=Aspergillus ... [more]
CSN5B_ARATH1.572e-2045.30COP9 signalosome complex subunit 5b OS=Arabidopsis... [more]
CSN5_CRYNE7.801e-2044.25COP9 signalosome complex subunit 5 OS=Cryptococcus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00321 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00321 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623230 ID=BQ623230; Name=BQ623230; organism=Citrus sinensis; type=EST; length=488bp
GGTGTGCCCATGGAGGTCATGGGTCTGATGCTGGGAGAGTTTGTGGACGA
GTACACAGTTCGGGTTGTTGATGTGTTTGCTATGCCACAAAGTGGAACTG
GTGTTAGTGTTGAAGCTGTTGATCATGTGTTCCAGACTAACATGCTTGAC
ATGCTCAAGCAGACTGGAAGACCAGAAATGGTTGTTGGATGGTATCACTC
ACATCCTGGATTTGGTTGCTGGCTCTCTGGTGTTGACATAAACACACAGC
AGAGTTTTGAAGCTTTGAATCAAAGGGCTGTTGCTGTGGTTGTGGATCCA
ATCCAGAGCGTGAAAGGGAAGGTAGTGATTGATGCCTTCCGCTTGATTAA
TCCCCAAACCATGATGCTTGGCCAAGAACCACGGCAGACAACTTCCAATC
TTGGTCATCTTAATAAGCCATCCATCCAAGCATTGATCCATGGCTTGAAT
AGACATTATTATTCTATTGCCATCAATTACAGGAAGGA
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