BQ623233

Overview
NameBQ623233
Unique NameBQ623233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623233 vs. ExPASy Swiss-Prot
Match: AMY2A_ORYSJ (Alpha-amylase isozyme 2A OS=Oryza sativa subsp. japonica GN=AMY2A PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.121e-47
Identity = 85/129 (65.89%), Postives = 99/129 (76.74%), Query Frame = 2
Query:    2 IGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEK 388
            IG  P  AVTF+DNHDTGSTQ++WPFPSDKVM GYAYILTHPG PCIFYDHFFDWGLKE I+ L AVR RNG+   S + I+  DAD Y+A I  +V+MKIG + D+ +LIP  F +AA G  YAVWEK
Sbjct:  299 IGWWPAKAVTFVDNHDTGSTQQMWPFPSDKVMQGYAYILTHPGNPCIFYDHFFDWGLKEQIAALVAVRQRNGVTATSSLKIMLHDADAYVAEIDGKVVMKIGSRYDVSSLIPPGFHLAAHGNGYAVWEK 427          
BLAST of BQ623233 vs. ExPASy Swiss-Prot
Match: AMY3_WHEAT (Alpha-amylase AMY3 OS=Triticum aestivum GN=AMY1.1 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.497e-47
Identity = 87/131 (66.41%), Postives = 106/131 (80.92%), Query Frame = 2
Query:    2 IGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIG-NLIPSDFKVAADGTDYAVWEKN 391
            IG +P+  VTFIDNHDTGSTQRLWPFPSDKVM GYAYILTHPG PCIFYDH FDW LK+ I+ LA VR+RNGI+  S ++IL ++ D+Y+A IG +VI KIG + +IG N+IPS FK+AA G +Y VWEK+
Sbjct:  281 IGWMPEKTVTFIDNHDTGSTQRLWPFPSDKVMQGYAYILTHPGIPCIFYDHVFDWKLKQEITALATVRSRNGIHPGSTLDILKAEGDLYVAKIGGKVITKIGSRYNIGDNVIPSGFKIAAKGNNYCVWEKS 411          
BLAST of BQ623233 vs. ExPASy Swiss-Prot
Match: AMY5_HORVU (Alpha-amylase type B isozyme (Fragment) OS=Hordeum vulgare GN=AMY1.5 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 5.562e-47
Identity = 83/129 (64.34%), Postives = 104/129 (80.62%), Query Frame = 2
Query:    2 IGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEK 388
            IG  P  AVTF++NHDTGSTQ +WPFPSD+VM GYAYILTH GTPCIFYDHFFDWG KE I +L +V  R+GI++ S++ I+ +DAD+ +A I  +VI+K+GP+ D+GNLIP  F+VAA G DYAVWEK
Sbjct:    6 IGWWPAKAVTFVNNHDTGSTQHMWPFPSDRVMQGYAYILTHQGTPCIFYDHFFDWGPKEEIDRLVSVSTRHGIHSESKLQIIEADADLCLAEIDGKVIVKLGPRYDVGNLIPGGFEVAAHGNDYAVWEK 134          
BLAST of BQ623233 vs. ExPASy Swiss-Prot
Match: AMY3E_ORYSJ (Alpha-amylase isozyme 3E OS=Oryza sativa subsp. japonica GN=AMY1.4 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 7.264e-47
Identity = 82/129 (63.57%), Postives = 100/129 (77.52%), Query Frame = 2
Query:    2 IGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEK 388
            +G +P  AVTF+DNHDTGSTQ LWPFPSDKVM GYAYILTHPG PCIFYDH FDW L+  I+ LA +R+RNGI+  S ++IL ++ D+Y+A I  +VI K+GP+ D G +IPSDF V A G DY VWEK
Sbjct:  297 MGWMPDQAVTFVDNHDTGSTQSLWPFPSDKVMQGYAYILTHPGIPCIFYDHVFDWNLQHEIATLAEIRSRNGIHAESTLDILKAEGDIYVAMIDGKVITKLGPRYDAGGIIPSDFHVVAHGNDYCVWEK 425          
BLAST of BQ623233 vs. ExPASy Swiss-Prot
Match: AMY1_HORVU (Alpha-amylase type A isozyme OS=Hordeum vulgare GN=AMY1.1 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 3.986e-45
Identity = 79/130 (60.77%), Postives = 97/130 (74.62%), Query Frame = 2
Query:    2 IGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEKN 391
            +G  P  A TF+DNHDTGSTQ +WPFPSDKVM GYAYILTHPG PCIFYDHFF+WG K+ I+ L A+R RNGI   S + IL  + D Y+A I  +V++KIG + D+G +IP+ F  +A G DYAVWEKN
Sbjct:  300 MGWWPAKAATFVDNHDTGSTQAMWPFPSDKVMQGYAYILTHPGIPCIFYDHFFNWGFKDQIAALVAIRKRNGITATSALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIPAGFVTSAHGNDYAVWEKN 429          
BLAST of BQ623233 vs. ExPASy Swiss-Prot
Match: AMY3_HORVU (Alpha-amylase type B isozyme (Fragment) OS=Hordeum vulgare GN=AMY1.3 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.522e-28
Identity = 54/68 (79.41%), Postives = 59/68 (86.76%), Query Frame = 2
Query:    2 IGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVR 205
            IG  P  AVTF+DNHDTGSTQ +WPFPSD+VM GYAYILTHPGTPCIFYDHFFDWGLKE I +L +VR
Sbjct:  298 IGWWPAKAVTFVDNHDTGSTQHMWPFPSDRVMQGYAYILTHPGTPCIFYDHFFDWGLKEEIDRLVSVR 365          
BLAST of BQ623233 vs. ExPASy Swiss-Prot
Match: AMT4_PSEST (Glucan 1,4-alpha-maltotetraohydrolase OS=Pseudomonas stutzeri GN=amyP PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.358e-13
Identity = 36/108 (33.33%), Postives = 55/108 (50.93%), Query Frame = 2
Query:   23 AVTFIDNHDTGST------QRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGN 328
            AVTF+DNHDTG +      Q  W      +   YAYILT PGTP +++ H +DWG  + I +L  VR   G+   S ++  +  + +     G +  + +    D+GN
Sbjct:  307 AVTFVDNHDTGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWSHMYDWGYGDFIRQLIQVRRAAGVRADSAISFHSGYSGLVATVSGSQQTLVVALNSDLGN 414          
BLAST of BQ623233 vs. ExPASy Swiss-Prot
Match: AMT4_PSESA (Glucan 1,4-alpha-maltotetraohydrolase OS=Pseudomonas saccharophila GN=mta PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.170e-12
Identity = 35/108 (32.41%), Postives = 54/108 (50.00%), Query Frame = 2
Query:   23 AVTFIDNHDTGST------QRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGN 328
            AVTF+DNHDTG +      Q  W      +   YAYILT PGTP +++ H +DWG  + I +L  VR   G+   S ++  +  + +     G +  + +    D+ N
Sbjct:  307 AVTFVDNHDTGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWSHMYDWGYGDFIRQLIQVRRTAGVRADSAISFHSGYSGLVATVSGSQQTLVVALNSDLAN 414          
BLAST of BQ623233 vs. ExPASy Swiss-Prot
Match: AMYC1_ORYSJ (Alpha-amylase isozyme C OS=Oryza sativa subsp. japonica GN=AMY1B PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.690e-11
Identity = 34/76 (44.74%), Postives = 41/76 (53.95%), Query Frame = 2
Query:    2 IGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTA 229
            IG  P  A TF+DNHDTG+                         PCIFYDHFFDWGLK+ I +L ++RNR GI+ A
Sbjct:  288 IGWWPAKATTFVDNHDTGN-------------------------PCIFYDHFFDWGLKDEIERLVSIRNRQGIHPA 338          
BLAST of BQ623233 vs. ExPASy Swiss-Prot
Match: AMYC1_ORYSI (Alpha-amylase isozyme C OS=Oryza sativa subsp. indica GN=AMYC PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.690e-11
Identity = 34/76 (44.74%), Postives = 41/76 (53.95%), Query Frame = 2
Query:    2 IGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTA 229
            IG  P  A TF+DNHDTG+                         PCIFYDHFFDWGLK+ I +L ++RNR GI+ A
Sbjct:  288 IGWWPAKATTFVDNHDTGN-------------------------PCIFYDHFFDWGLKDEIERLVSIRNRQGIHPA 338          
The following BLAST results are available for this feature:
BLAST of BQ623233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
AMY2A_ORYSJ1.121e-4765.89Alpha-amylase isozyme 2A OS=Oryza sativa subsp. ja... [more]
AMY3_WHEAT2.497e-4766.41Alpha-amylase AMY3 OS=Triticum aestivum GN=AMY1.1 ... [more]
AMY5_HORVU5.562e-4764.34Alpha-amylase type B isozyme (Fragment) OS=Hordeum... [more]
AMY3E_ORYSJ7.264e-4763.57Alpha-amylase isozyme 3E OS=Oryza sativa subsp. ja... [more]
AMY1_HORVU3.986e-4560.77Alpha-amylase type A isozyme OS=Hordeum vulgare GN... [more]
AMY3_HORVU1.522e-2879.41Alpha-amylase type B isozyme (Fragment) OS=Hordeum... [more]
AMT4_PSEST2.358e-1333.33Glucan 1,4-alpha-maltotetraohydrolase OS=Pseudomon... [more]
AMT4_PSESA1.170e-1232.41Glucan 1,4-alpha-maltotetraohydrolase OS=Pseudomon... [more]
AMYC1_ORYSJ1.690e-1144.74Alpha-amylase isozyme C OS=Oryza sativa subsp. jap... [more]
AMYC1_ORYSI1.690e-1144.74Alpha-amylase isozyme C OS=Oryza sativa subsp. ind... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00324 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00324 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623233 ID=BQ623233; Name=BQ623233; organism=Citrus sinensis; type=EST; length=540bp
CATTGGAATTTTACCACAAAATGCTGTGACTTTTATTGACAATCATGACA
CAGGGTCCACTCAACGTCTGTGGCCATTCCCATCGGATAAAGTCATGCTT
GGATATGCTTACATCCTCACACATCCCGGCACCCCTTGCATATTTTATGA
TCACTTCTTTGACTGGGGTCTGAAGGAGGCGATTAGCAAATTGGCTGCTG
TCAGAAATAGGAATGGGATCAATACAGCAAGCAGAGTTAATATTTTAGCC
TCAGATGCCGATGTCTACATTGCTGCAATTGGTGATAGAGTCATTATGAA
GATTGGACCAAAGATGGATATTGGAAATCTTATTCCTTCTGACTTCAAAG
TGGCTGCCGATGGAACCGACTATGCTGTCTGGGAAAAAAACTGAACTCAA
TGAAGATTTTATTTTCAAGTTATTAGAATAATAATGTTCTGAAAGGCTAT
TGTTTAACACGTAAAAGAGCTCTTGTGAGAATAAAATGCAAATATTCTGT
ATTTATGTAAACATATCTCTCACTAAAATAGTTATTTGAA
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