BQ623243

Overview
NameBQ623243
Unique NameBQ623243
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length154
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:368..520. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.299e-14
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+GD+RSSIFDAKAGIALS  FVKLVSWYDNEWGYS+RV D
Sbjct:  291 FIGDNRSSIFDAKAGIALSDNFVKLVSWYDNEWGYSSRVID 331          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.615e-14
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F GDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYSTRV D
Sbjct:  288 FQGDSRSSIFDAKAGIALNGNFVKLVSWYDNEWGYSTRVVD 328          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.615e-14
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+GD+RSSIFDAKAGIALSK FVKLVSWYDNE GYSTRV D
Sbjct:  288 FIGDNRSSIFDAKAGIALSKNFVKLVSWYDNEMGYSTRVVD 328          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.615e-14
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+GD+RSSIFDAKAGI+L+  FVKLVSWYDNEWGYSTRV D
Sbjct:  288 FIGDNRSSIFDAKAGISLNDNFVKLVSWYDNEWGYSTRVVD 328          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3PC_MAGLI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.334e-14
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+GD+RSSIFDAKAGIAL++ FVKLVSWYDNEWGYS+RV D
Sbjct:  290 FIGDNRSSIFDAKAGIALNEHFVKLVSWYDNEWGYSSRVID 330          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSJ (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. japonica GN=GAPC PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.578e-14
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            FVGDSRSSIFDAKAGIAL+  FVKLV+WYDNEWGYS RV D
Sbjct:  288 FVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVID 328          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. indica GN=GAPC PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.578e-14
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            FVGDSRSSIFDAKAGIAL+  FVKLV+WYDNEWGYS RV D
Sbjct:  288 FVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVID 328          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.578e-14
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+GDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYS RV D
Sbjct:  288 FLGDSRSSIFDAKAGIALNDHFVKLVSWYDNEWGYSNRVVD 328          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.251e-13
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            FVGDSRSSIFDAKAGIAL+  FVK+VSWYDNEWGYS RV D
Sbjct:  287 FVGDSRSSIFDAKAGIALNGNFVKVVSWYDNEWGYSNRVID 327          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.634e-13
Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F GDSRSSIFDAKAGIAL+  F+KLVSWYDNEWGYS RV D
Sbjct:  288 FTGDSRSSIFDAKAGIALNDHFIKLVSWYDNEWGYSNRVVD 328          
The following BLAST results are available for this feature:
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
G3PC_GINBI4.299e-1485.37Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PE_MAIZE5.615e-1487.80Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETHY5.615e-1487.80Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MESCR5.615e-1482.93Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAGLI7.334e-1482.93Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSJ9.578e-1485.37Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSI9.578e-1485.37Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAIZE9.578e-1485.37Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETCR1.251e-1385.37Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PD_MAIZE1.634e-1382.93Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00334 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00334 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623243 ID=BQ623243; Name=BQ623243; organism=Citrus sinensis; type=EST; length=154bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATGACAATGAGTGG
GGCTACAGTACTCGTGTGGGGGATTTTGATTGGCCACATGGCGAAGACCC
AGTA
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