BQ623243

Overview
NameBQ623243
Unique NameBQ623243
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length154
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:368..520. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P3_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluyveromyces marxianus GN=GAP3 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.529e-11
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+GD+ SSIFDA AGI LS +FVKLVSWYDNE+GYSTRV D
Sbjct:  283 FLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVD 323          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P2_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces marxianus GN=GAP2 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.529e-11
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+GD+ SSIFDA AGI LS +FVKLVSWYDNE+GYSTRV D
Sbjct:  283 FLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVD 323          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P1_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces marxianus GN=GAP1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.997e-11
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+GD+ S+IFDA AGI LS KFVKLV+WYDNE+GYSTRV D
Sbjct:  283 FLGDTHSTIFDAAAGIQLSPKFVKLVAWYDNEYGYSTRVVD 323          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.608e-11
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+G+S SSIFDA AGI+L+  FVKLVSWYDNEWGYS R  D
Sbjct:  286 FIGNSHSSIFDAAAGISLNNNFVKLVSWYDNEWGYSNRCLD 326          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P_SORMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Sordaria macrospora GN=GPD PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.608e-11
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            G+  SSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV D
Sbjct:  287 GNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLD 325          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P_NEUCR (Glyceraldehyde 3-phosphate-dehydrogenase OS=Neurospora crassa GN=gpd-1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.608e-11
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            G+  SSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV D
Sbjct:  287 GNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLD 325          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P_COLLN (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum lindemuthianum GN=GPDA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.407e-11
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 2
Query:    5 VGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            +G+  SSIFDAKAGI+L+  FVKLVSWYDNEWGYS RV D
Sbjct:  286 IGNPNSSIFDAKAGISLNNNFVKLVSWYDNEWGYSRRVLD 325          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P_COLGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum gloeosporioides GN=GPDA PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.407e-11
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 2
Query:    5 VGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            +G+  SSIFDAKAGI+L+  FVKLVSWYDNEWGYS RV D
Sbjct:  287 IGNPNSSIFDAKAGISLNNNFVKLVSWYDNEWGYSRRVLD 326          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P_CLAPU (Glyceraldehyde-3-phosphate dehydrogenase OS=Claviceps purpurea GN=GPD-1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.407e-11
Identity = 29/39 (74.36%), Postives = 35/39 (89.74%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            G++ SSIFDAKAGI+L+K FVKL++WYDNEWGYS RV D
Sbjct:  287 GNTNSSIFDAKAGISLNKNFVKLIAWYDNEWGYSRRVLD 325          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P2_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Trichoderma koningii GN=gpd2 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 3.407e-11
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 2
Query:    5 VGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            +G++ SSIFD KAGI+L+K FVKLVSWYDNEWGYS RV D
Sbjct:  287 LGNTNSSIFDIKAGISLNKNFVKLVSWYDNEWGYSRRVLD 326          
The following BLAST results are available for this feature:
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
G3P3_KLUMA1.529e-1178.05Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluy... [more]
G3P2_KLUMA1.529e-1178.05Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P1_KLUMA1.997e-1175.61Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_USTMA2.608e-1173.17Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila... [more]
G3P_SORMA2.608e-1179.49Glyceraldehyde-3-phosphate dehydrogenase OS=Sordar... [more]
G3P_NEUCR2.608e-1179.49Glyceraldehyde 3-phosphate-dehydrogenase OS=Neuros... [more]
G3P_COLLN3.407e-1175.00Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P_COLGL3.407e-1175.00Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P_CLAPU3.407e-1174.36Glyceraldehyde-3-phosphate dehydrogenase OS=Clavic... [more]
G3P2_TRIKO3.407e-1175.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Tric... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00334 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00334 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623243 ID=BQ623243; Name=BQ623243; organism=Citrus sinensis; type=EST; length=154bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATGACAATGAGTGG
GGCTACAGTACTCGTGTGGGGGATTTTGATTGGCCACATGGCGAAGACCC
AGTA
back to top