BQ623243

Overview
NameBQ623243
Unique NameBQ623243
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length154
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:368..520. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 3.407e-11
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+GD+ +SIFDA AGI LS KFVKL+SWYDNE+GYS RV D
Sbjct:  284 FLGDTHASIFDASAGIQLSPKFVKLISWYDNEYGYSARVVD 324          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P_PHARH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffia rhodozyma GN=GPD PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.449e-11
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F GDS SS FDA+ GI+L+  FVKLVSWYDNEWGYS RV D
Sbjct:  286 FTGDSASSTFDAQGGISLNGNFVKLVSWYDNEWGYSARVCD 326          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3PT_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Bos taurus GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.449e-11
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+ D+ SSIFDAKAGIAL+  FVKL+SWYDNE+GYS RV D
Sbjct:  345 FLSDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSNRVVD 385          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P_SCHMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.811e-11
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            FVG + SSIFDAKAGI+L+  FVKLVSWYDNE+GYS RV D
Sbjct:  287 FVGSTSSSIFDAKAGISLNNNFVKLVSWYDNEFGYSCRVVD 327          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.811e-11
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            G++ SSIFDAKAGI+L+  FVKLVSWYDNEWGYS RV D
Sbjct:  287 GNANSSIFDAKAGISLNDNFVKLVSWYDNEWGYSRRVLD 325          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.811e-11
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+ D+RSSIFDA+AGI LS +FVKL++WYDNE+GYSTRV D
Sbjct:  285 FLTDNRSSIFDAEAGIWLSPRFVKLIAWYDNEYGYSTRVVD 325          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3PT_DANRE (Glyceraldehyde 3-phosphate dehydrogenase, testis-specific OS=Danio rerio GN=gapdhs PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.811e-11
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            FVGD+ SSIFDA AGI+L+  FVKL+SWYDNE+GYS RV D
Sbjct:  286 FVGDTHSSIFDAGAGISLNDNFVKLISWYDNEFGYSHRVAD 326          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P2_DROPS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.811e-11
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+ D+ SS+FDAKAGI+L+ KFVKL+SWYDNE+GYS RV D
Sbjct:  283 FLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVID 323          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.811e-11
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+ D+ SS+FDAKAGI+L+ KFVKL+SWYDNE+GYS RV D
Sbjct:  283 FLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVID 323          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P1_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agaricus bisporus GN=gpd1 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.811e-11
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            FVG + S IFDAKAGIAL+ +F+KLV+WYDNEWGY+ RV D
Sbjct:  288 FVGSNYSMIFDAKAGIALNSRFMKLVAWYDNEWGYARRVCD 328          
The following BLAST results are available for this feature:
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
G3P1_YEAST3.407e-1173.17Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
G3P_PHARH4.449e-1173.17Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffi... [more]
G3PT_BOVIN4.449e-1173.17Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P_SCHMA5.811e-1175.61Glyceraldehyde-3-phosphate dehydrogenase OS=Schist... [more]
G3P_PODAN5.811e-1176.92Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]
G3P_PICCI5.811e-1173.17Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3PT_DANRE5.811e-1173.17Glyceraldehyde 3-phosphate dehydrogenase, testis-s... [more]
G3P2_DROPS5.811e-1170.73Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P2_DROME5.811e-1170.73Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P1_AGABI5.811e-1170.73Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agar... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00334 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00334 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623243 ID=BQ623243; Name=BQ623243; organism=Citrus sinensis; type=EST; length=154bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATGACAATGAGTGG
GGCTACAGTACTCGTGTGGGGGATTTTGATTGGCCACATGGCGAAGACCC
AGTA
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