BQ623243

Overview
NameBQ623243
Unique NameBQ623243
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length154
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:368..520. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P_CRYNE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus neoformans GN=GPD PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.589e-11
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 2 
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+G + SSIFDA+AGIAL+  FVKLVSWYDNE+GYS RV D
Sbjct:  286 FIGSTESSIFDAQAGIALNANFVKLVSWYDNEYGYSRRVCD 326
[Close]
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.589e-11
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 2 
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+G + SS+FDAKAGI L+ KFVKL+SWYDNE+GYS RV D
Sbjct:  285 FLGSTESSVFDAKAGIPLNDKFVKLISWYDNEYGYSRRVCD 325
[Close]
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P1_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Candida glabrata GN=GPD1 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.589e-11
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 2 
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+GD+ SSIFDA AGI LS +FVKLVSWYDNE+G+S RV D
Sbjct:  284 FLGDTHSSIFDASAGIQLSPRFVKLVSWYDNEYGFSARVVD 324
[Close]
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P_RALSO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ralstonia solanacearum GN=gapA PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.912e-11
Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 2 
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRV 118
            F GD+R+SIFDA+AGIAL   F+K+VSWYDNEWGYS +V
Sbjct:  285 FRGDARTSIFDAEAGIALDGTFIKVVSWYDNEWGYSNKV 323
[Close]
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.912e-11
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 2 
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F  D+ SS+FDAKAGI+L+ KFVKL+SWYDNE+GYS RV D
Sbjct:  283 FFSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVID 323
The following BLAST results are available for this feature:
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
G3P_CRYNE7.589e-1173.17Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_CRYCU7.589e-1170.73Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P1_CANGA7.589e-1173.17Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Cand... [more]
G3P_RALSO9.912e-1171.79Glyceraldehyde-3-phosphate dehydrogenase OS=Ralsto... [more]
G3P1_DROME9.912e-1170.73Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00334 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00334 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623243 ID=BQ623243; Name=BQ623243; organism=Citrus sinensis; type=EST; length=154bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATGACAATGAGTGG
GGCTACAGTACTCGTGTGGGGGATTTTGATTGGCCACATGGCGAAGACCC
AGTA
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