BQ623244

Overview
NameBQ623244
Unique NameBQ623244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8808 contig Csv1_Contig8808:5..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.719e-17
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 3
Query:  255 FENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            FE L   RN     A GF+ Y +F+ AAA +    FG +      ++EVAAFLG    +T+ G+  A  GP +WG C+ +E +P   YC    +  +PC PG  Y+G+
Sbjct:   98 FERLLLHRNDGACPARGFYTYEAFLAAAAAFP--AFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPE--WPCAPGRKYYGR 201          

HSP 2 Score: 30.8018 bits (68), Expect = 1.719e-17
Identity = 12/26 (46.15%), Postives = 18/26 (69.23%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDILT 651
            G G + L +N+NYG  G A+ VD+L+
Sbjct:  200 GRGPIQLSFNFNYGPAGRAIGVDLLS 225          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.721e-17
Identity = 52/178 (29.21%), Postives = 77/178 (43.26%), Query Frame = 3
Query:   96 LSVLVIVHGDESSVKPLVKIVKGKKLCDK-GWECKGWSEYCCNQT---------------ISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYG-VATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            LS L++   ++   +    +  G   C + GW C    +YC  +                +       +F+ +   RN     A GF+ Y +FI AA  +    F T+      ++EVAAFL     +T+ G G  A  GP  WG CYN+E++P   YC  D    YPC PG  Y G+
Sbjct:   13 LSYLILGSAEQCGRQAGGALCPGGLCCSQFGW-CGNTDDYCKKENGCQSQCSGSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFP--AFATTGDDATRKREVAAFLAQTSHETTGGAGWAAPDGPYTWGYCYNRELNPAD-YCQWD--PNYPCAPGKQYFGR 184          

HSP 2 Score: 36.5798 bits (83), Expect = 1.721e-17
Identity = 14/25 (56.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G + L WNYNYG+ G A+ VD+L
Sbjct:  183 GRGPMQLTWNYNYGQCGRAIGVDLL 207          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.237e-17
Identity = 53/178 (29.78%), Postives = 78/178 (43.82%), Query Frame = 3
Query:   93 ILSVLVIVH---GDESSVKPLVKIVKGKKLCDK-GWECKGWSEYC---CNQ---------TISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            IL VL IV     ++   +    +  G   C K GW C   SEYC   C           T+S       F N+   RN        F+ Y +F++AA  +    F         ++E+AAFLG    +T+ G+  A  GP AWG C+ +E +P+  YC    +  +PC  G  Y+G+
Sbjct:    8 ILLVLFIVSCCSAEQCGTQAGGALCPGGLCCSKFGW-CGSTSEYCGDGCQSQCSGSSGGGTLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFP--NFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPS-TYCQASSE--FPCASGKQYYGR 179          

HSP 2 Score: 35.8094 bits (81), Expect = 2.237e-17
Identity = 13/25 (52.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G + + WNYNYG+ G A+ VD+L
Sbjct:  178 GRGPIQISWNYNYGQCGRAIGVDLL 202          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.911e-17
Identity = 42/139 (30.22%), Postives = 59/139 (42.45%), Query Frame = 3
Query:  174 CDKGWECKGWSEYCCNQTISD----YFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            C  G  C     YCC   +S     +F    FE +   RN       GF+ Y ++  A   Y   GFG +      ++E+AAF      +TS    +    P  WG C   E++PN  YCD   K +YPC     Y+G+
Sbjct:   41 CSSGGYCGLTVAYCCAGCVSQCRNCFFTESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYP--GFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCV--ADYYGR 175          

HSP 2 Score: 32.7278 bits (73), Expect = 2.911e-17
Identity = 14/25 (56.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G L L WNYNYGE G  L  ++L
Sbjct:  174 GRGPLQLRWNYNYGECGNYLGQNLL 198          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 4.910e-17
Identity = 45/117 (38.46%), Postives = 63/117 (53.85%), Query Frame = 3
Query:  228 ISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            +SD     +F+ L   RN     A GF+ Y++FI+AA  +    FG +   LM ++E+AAFLG    +T+ G+  A  GP AWG CY KE++  Q YCD      Y C  G  Y G+
Sbjct:   89 LSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPD--FGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN-CQPYCDP--SSNYQCVAGKQYCGR 200          

HSP 2 Score: 32.7278 bits (73), Expect = 4.910e-17
Identity = 13/25 (52.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G + L WNYNYG  G+ LK+ +L
Sbjct:  199 GRGPIQLSWNYNYGLCGDDLKLPLL 223          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.392e-17
Identity = 38/108 (35.19%), Postives = 56/108 (51.85%), Query Frame = 3
Query:  255 FENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            F+ +   RN     A GF+ Y +F+ AA  +   GFGT+      ++EVAAFL     +T+ G+  A  G  AWG C+ +E      YC    +  +PC PG SY+G+
Sbjct:   89 FDRMLLHRNDGACQAKGFYTYDAFVAAAGAFP--GFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQ--WPCAPGKSYYGR 192          

HSP 2 Score: 30.8018 bits (68), Expect = 6.392e-17
Identity = 13/25 (52.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G + L  NYNYG  G A+ VD+L
Sbjct:  191 GRGPIQLSHNYNYGPAGRAIGVDLL 215          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.373e-16
Identity = 38/108 (35.19%), Postives = 57/108 (52.78%), Query Frame = 3
Query:  255 FENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            F+ +   RN       GF+ Y +FI AA  +  +GFGT+      +KE+AAFL     +T+ G+  A  GP AWG C+  E +  ++YC       +PC PG  Y+G+
Sbjct:   89 FDQMLKYRNDGRCAGHGFYTYDAFIAAARSF--NGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPK---DWPCAPGKKYYGR 191          

HSP 2 Score: 30.4166 bits (67), Expect = 2.373e-16
Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G + L  NYNYG  G+A+K D++
Sbjct:  190 GRGPIQLTHNYNYGLAGQAIKEDLI 214          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.852e-16
Identity = 37/118 (31.36%), Postives = 58/118 (49.15%), Query Frame = 3
Query:  225 TISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            ++S      QF+ +   RN     A GF+ Y +F+ AA  +   GFG +      +++VAAFL     +T+ G+  A  G  AWG C+ +E      YC    +  +PC PG  Y+G+
Sbjct:   24 SVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFP--GFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQ--WPCAPGKRYYGR 137          

HSP 2 Score: 30.8018 bits (68), Expect = 8.852e-16
Identity = 13/25 (52.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G + L  NYNYG  G A+ VD+L
Sbjct:  136 GRGPIQLSHNYNYGPAGRAIGVDLL 160          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.486e-15
Identity = 45/152 (29.61%), Postives = 66/152 (43.42%), Query Frame = 3
Query:  174 CDK-GWECKGWSEYC----CNQT------------ISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            C K GW C   ++YC    C               +     +  F+ +   RN       GF+ Y++FI AA  +   GFGTS      ++E+AAF      +T+ G+  A  GP AWG C+ +E      YC    +  +PC PG  Y G+
Sbjct:   41 CSKFGW-CGNTNDYCGPGNCQSQCPGGPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFP--GFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQ--WPCAPGRKYFGR 187          

HSP 2 Score: 29.6462 bits (65), Expect = 1.486e-15
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G + +  NYNYG  G A+ VD+L
Sbjct:  186 GRGPIQISHNYNYGPCGRAIGVDLL 210          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.930e-15
Identity = 37/108 (34.26%), Postives = 54/108 (50.00%), Query Frame = 3
Query:  255 FENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            FE L   RN     A GF+ Y + +TAAA +    F  +      ++EVAAFLG    +T+ G+  A  GP +WG C+ +E+     YC    +  +PC P   Y G+
Sbjct:   95 FEQLLLHRNDAACPARGFYTYDALVTAAAAFPD--FAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYCVPSAE--WPCAPDKKYFGR 198          

HSP 2 Score: 31.9574 bits (71), Expect = 1.930e-15
Identity = 13/25 (52.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G + L +NYNYG  GEA+  D+L
Sbjct:  197 GRGPIQLSYNYNYGPAGEAIGEDLL 221          
The following BLAST results are available for this feature:
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CHI2_ORYSJ1.719e-1737.04Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_THECC1.721e-1729.21Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI2_PEA2.237e-1729.78Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI8_POPTR2.911e-1730.22Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI6_POPTR4.910e-1738.46Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIA_SECCE6.392e-1735.19Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHIX_PEA2.373e-1635.19Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHIC_SECCE8.852e-1631.36Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI2_TOBAC1.486e-1529.61Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI9_ORYSJ1.930e-1534.26Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00335 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00335 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623244 ID=BQ623244; Name=BQ623244; organism=Citrus sinensis; type=EST; length=677bp
GAAATTAAATTTCTAAACGTAGCTCATTTAATTTCCTCCCATTCATTTAG
CTATGAAGCTCAAATGGCAGCGTAGTACTTTTTGCAACGGCAATTTTATC
AGTGCTAGTCATTGTGCATGGCGATGAATCTTCAGTGAAGCCATTAGTGA
AGATTGTGAAGGGCAAGAAATTGTGTGACAAAGGGTGGGAGTGTAAAGGA
TGGTCTGAGTATTGCTGCAATCAAACGATATCGGATTACTTTCAGACTTA
CCAATTTGAGAACCTTTTTGCAAAGCGTAACACCCCTGTGGCTCATGCTG
TTGGGTTTTGGGACTACCATTCTTTTATAACCGCTGCTGCTTTATATCAG
CCTCATGGGTTTGGTACCAGTGCAGGAAAGCTCATGGGTCAAAAGGAAGT
TGCTGCTTTTCTTGGCCACGTTGGAAGCAAAACCTCGTGTGGGTATGGAG
TGGCAACTGGTGGACCATTGGCTTGGGGTCTATGCTACAACAAGGAGATG
AGTCCTAACCAGATATACTGCGATGATGACTTCAAATACACATATCCTTG
CACTCCTGGAGTTTCATATCATGGGCAGCGGTGCCTTGCCCCTCTACTGG
AACTACAACTATGGGGAAACAGGAGAAGCCCTAAAAGTTGATATATTGAC
CACCCAGAGTACATAGAAACAATGCGA
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