BQ623244

Overview
NameBQ623244
Unique NameBQ623244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8808 contig Csv1_Contig8808:5..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.931e-15
Identity = 37/108 (34.26%), Postives = 54/108 (50.00%), Query Frame = 3
Query:  255 FENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            F+ +   RN       GF+ Y++FI AA  +   GFGTS      ++E+AAF      +T+ G+  A  GP AWG C+ +E      YC    +  +PC PG  Y G+
Sbjct:   89 FDQMLKHRNDNACQGKGFYSYNAFINAARSFP--GFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQ--WPCAPGRKYFGR 192          

HSP 2 Score: 29.6462 bits (65), Expect = 1.931e-15
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G + +  NYNYG  G A+ VD+L
Sbjct:  191 GRGPIQISHNYNYGPCGRAIGVDLL 215          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.259e-15
Identity = 39/117 (33.33%), Postives = 59/117 (50.43%), Query Frame = 3
Query:  228 ISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            IS+   +  F+ +   RN        F+ Y++FITAA  ++  GFGT+      ++EVAAF      +T+ G+  A  G  AWG CY +E      YC    +  +PC PG  Y+G+
Sbjct:   85 ISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFR--GFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYCVQSSQ--WPCAPGQKYYGR 197          

HSP 2 Score: 26.9498 bits (58), Expect = 3.259e-15
Identity = 10/25 (40.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G + + +NYNYG  G A+  ++L
Sbjct:  196 GRGPIQISYNYNYGPCGRAIGQNLL 220          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14
Identity = 42/109 (38.53%), Postives = 57/109 (52.29%), Query Frame = 3
Query:  255 FENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYG-VATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            F  +   RN     A GF+ Y +FI AA  +    F T+  +   ++E+AAFL     +T+ G G  A  GP AWG CYN+E++P   YC  D    YPC PG  Y G+
Sbjct:   61 FNQMLLHRNDGACPARGFYTYDAFIAAARSFP--AFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASD--PNYPCAPGKQYFGR 165          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14
Identity = 42/109 (38.53%), Postives = 57/109 (52.29%), Query Frame = 3
Query:  255 FENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYG-VATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            F  +   RN     A GF+ Y +FI AA  +    F T+  +   ++E+AAFL     +T+ G G  A  GP AWG CYN+E++P   YC  D    YPC PG  Y G+
Sbjct:   83 FNQMLLHRNDGACPARGFYTYDAFIAAARSFP--AFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASD--PNYPCAPGKQYFGR 187          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.445e-14
Identity = 45/151 (29.80%), Postives = 66/151 (43.71%), Query Frame = 3
Query:  174 CDK-GWECKGWSEYC----CNQT----------ISDYFQTYQFENLFAKRNTPVAHAVG-FWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            C K GW C   +EYC    C             +        F+ +   RN         F+ Y++F+TAA  +   GFGT+      ++E+AAFL     +T+ G+  A  GP AWG C+ +E      YC    +  +PC PG  Y G+
Sbjct:   40 CSKFGW-CGNTNEYCGPGNCQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFP--GFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQ--WPCAPGRKYFGR 185          

HSP 2 Score: 29.6462 bits (65), Expect = 3.445e-14
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G + +  NYNYG  G A+ VD+L
Sbjct:  184 GRGPIQISHNYNYGPCGRAIGVDLL 208          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.550e-14
Identity = 36/108 (33.33%), Postives = 53/108 (49.07%), Query Frame = 3
Query:  255 FENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            F+ +   RN        F+ Y++FI AA  +   GFGTS      ++E+AAF      +T+ G+  A  GP AWG C+ +E      YC    +  +PC PG  Y G+
Sbjct:   88 FDQMLKHRNENSCQGKNFYSYNAFINAARSFP--GFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERGNPGDYCPPSSQ--WPCAPGRKYFGR 191          

HSP 2 Score: 29.6462 bits (65), Expect = 7.550e-14
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G + +  NYNYG  G A+ VD+L
Sbjct:  190 GRGPIQISHNYNYGPCGRAIGVDLL 214          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.557e-14
Identity = 37/109 (33.94%), Postives = 56/109 (51.38%), Query Frame = 3
Query:  255 FENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPN-QIYCDDDFKYTYPCTPGVSYHGQ 578
            F+ +   RN     A GF+ Y +F+ AA  Y    F T+      ++EVAAFL     +T+ G+  A  GP +WG C+ +E + N   YC+   K  +PC  G  Y+G+
Sbjct:   85 FDQMLLHRNDQACAAKGFYTYDAFVAAANAYPD--FATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEP--KPEWPCAAGKKYYGR 189          

HSP 2 Score: 30.0314 bits (66), Expect = 7.557e-14
Identity = 11/25 (44.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G + + +NYNYG  G+A+  D+L
Sbjct:  188 GRGPIQITYNYNYGPAGQAIGSDLL 212          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.559e-14
Identity = 44/149 (29.53%), Postives = 66/149 (44.30%), Query Frame = 3
Query:  174 CDK-GWECKGWSEYC----CNQT--------ISDYFQTYQFENLFAKRNTPVAHAVG-FWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            C K GW C   ++YC    C           +        F+ +   RN       G F+ Y++FI+AA  +   GFGT+      ++E+AAF      +T+ G+  A  GP AWG C+ +E      YC    +  +PC PG  Y G+
Sbjct:   36 CSKFGW-CGNTNDYCGPGNCQSQCPGGSPGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFP--GFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPGDYCTPSNQ--WPCAPGRKYFGR 179          

HSP 2 Score: 29.6462 bits (65), Expect = 7.559e-14
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G + +  NYNYG  G A+ VD+L
Sbjct:  178 GRGPIQISHNYNYGPCGRAIGVDLL 202          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.817e-14
Identity = 46/160 (28.75%), Postives = 68/160 (42.50%), Query Frame = 3
Query:  162 GKKLCDKGWECK--GW----SEYC----CNQT----------ISDYFQTYQFENLFAKRNTPVAHAVG-FWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            G  LC  G  C   GW    ++YC    C             +        F+ +   RN       G F+ Y++FI+AA  +   GFGT+      ++E+AAF      +T+ G+  A  GP AWG C+ +E      YC    +  +PC PG  Y G+
Sbjct:   26 GGALCASGLCCSKFGWCGDTNDYCGPGNCQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFP--GFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQ--WPCAPGRKYFGR 181          

HSP 2 Score: 29.6462 bits (65), Expect = 9.817e-14
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G + +  NYNYG  G A+ VD+L
Sbjct:  180 GRGPIQISHNYNYGPCGRAIGVDLL 204          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 2.795e-13
Identity = 44/151 (29.14%), Postives = 66/151 (43.71%), Query Frame = 3
Query:  174 CDK-GWECKGWSEYC----CNQT----------ISDYFQTYQFENLFAKRNTPVAHAVG-FWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            C K GW C   ++YC    C             +        F+ +   RN         F+ Y++FI+AA  +   GFGT+      ++E+AAFL     +T+ G+  A  GP AWG C+ +E      YC    +  +PC PG  Y G+
Sbjct:   36 CSKFGW-CGNTNDYCGPGNCQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFP--GFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQ--WPCAPGRKYFGR 181          

HSP 2 Score: 29.6462 bits (65), Expect = 2.795e-13
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G + +  NYNYG  G A+ VD+L
Sbjct:  180 GRGPIQISHNYNYGPCGRAIGVDLL 204          
The following BLAST results are available for this feature:
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CHI1_TOBAC1.931e-1534.26Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI3_TOBAC3.259e-1533.33Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI2_GOSHI1.535e-1438.53Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI1.535e-1438.53Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHIC_SOLLC3.445e-1429.80Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHIT_SOLTU7.550e-1433.33Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI3_ORYSJ7.557e-1433.94Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_SOLTU7.559e-1429.53Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_SOLTU9.817e-1428.75Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_SOLTU2.795e-1329.14Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00335 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00335 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623244 ID=BQ623244; Name=BQ623244; organism=Citrus sinensis; type=EST; length=677bp
GAAATTAAATTTCTAAACGTAGCTCATTTAATTTCCTCCCATTCATTTAG
CTATGAAGCTCAAATGGCAGCGTAGTACTTTTTGCAACGGCAATTTTATC
AGTGCTAGTCATTGTGCATGGCGATGAATCTTCAGTGAAGCCATTAGTGA
AGATTGTGAAGGGCAAGAAATTGTGTGACAAAGGGTGGGAGTGTAAAGGA
TGGTCTGAGTATTGCTGCAATCAAACGATATCGGATTACTTTCAGACTTA
CCAATTTGAGAACCTTTTTGCAAAGCGTAACACCCCTGTGGCTCATGCTG
TTGGGTTTTGGGACTACCATTCTTTTATAACCGCTGCTGCTTTATATCAG
CCTCATGGGTTTGGTACCAGTGCAGGAAAGCTCATGGGTCAAAAGGAAGT
TGCTGCTTTTCTTGGCCACGTTGGAAGCAAAACCTCGTGTGGGTATGGAG
TGGCAACTGGTGGACCATTGGCTTGGGGTCTATGCTACAACAAGGAGATG
AGTCCTAACCAGATATACTGCGATGATGACTTCAAATACACATATCCTTG
CACTCCTGGAGTTTCATATCATGGGCAGCGGTGCCTTGCCCCTCTACTGG
AACTACAACTATGGGGAAACAGGAGAAGCCCTAAAAGTTGATATATTGAC
CACCCAGAGTACATAGAAACAATGCGA
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