BQ623244

Overview
NameBQ623244
Unique NameBQ623244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8808 contig Csv1_Contig8808:5..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 6.137e-13
Identity = 36/118 (30.51%), Postives = 54/118 (45.76%), Query Frame = 3
Query:  228 ISDYFQTYQFENLFAKRNTPVAHAVG-FWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            I        F+ +   RN         F+ Y++FI AA  +   GFGT+      ++E+AAF      +T+ G+  A  GP AWG C+ +E      YC    +  +PC PG  Y G+
Sbjct:   78 IGSVISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFG--GFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSGQ--WPCAPGRKYFGR 191          

HSP 2 Score: 29.6462 bits (65), Expect = 6.137e-13
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G + +  NYNYG  G A+ VD+L
Sbjct:  190 GRGPIQISHNYNYGPCGRAIGVDLL 214          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 63.929 bits (154), Expect = 1.033e-12
Identity = 35/111 (31.53%), Postives = 55/111 (49.55%), Query Frame = 3
Query:  255 FENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKL-MGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEM--SPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            F+ +   RN     A  F+ Y +F+ AA+ +   GF  + G     ++EVAAFL     +T+ G+  A  GP AWG C+ +E   +    YC    +  +PC  G  Y+G+
Sbjct:   90 FDQMLLHRNDAACPASNFYTYDAFVAAASAFP--GFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQ--WPCAAGKKYYGR 196          

HSP 2 Score: 30.0314 bits (66), Expect = 1.033e-12
Identity = 11/25 (44.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G + L +N+NYG  G+A+  D+L
Sbjct:  195 GRGPIQLSYNFNYGPAGQAIGADLL 219          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 3.815e-12
Identity = 34/110 (30.91%), Postives = 54/110 (49.09%), Query Frame = 3
Query:  255 FENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPN--QIYCDDDFKYTYPCTPGVSYHGQ 578
            F+ +   RN     A  F+ Y +F+ AA  +    F T+      ++EVAAFL     +T+ G+  A  GP +WG C+ +E + N    YC    +  +PC  G  Y+G+
Sbjct:   88 FDQMLLHRNDAACPAKNFYTYDAFVAAANAFP--SFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQ--WPCAAGKKYYGR 193          

HSP 2 Score: 28.4906 bits (62), Expect = 3.815e-12
Identity = 10/26 (38.46%), Postives = 18/26 (69.23%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDILT 651
            G G + + +NYNYG  G+A+  ++L+
Sbjct:  192 GRGPIQISYNYNYGPAGQAIGSNLLS 217          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 4.945e-12
Identity = 34/109 (31.19%), Postives = 51/109 (46.79%), Query Frame = 3
Query:  252 QFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            QFE +   R+     A GF+ Y +F+ AA  +    F  +      ++EVAAFL      TS       GGP +WG CY +       +C  + +  +PC PG +YH +
Sbjct:  105 QFERMLPHRDDAACPARGFYAYRAFVAAAGAFP--AFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNAR--WPCAPGKAYHAR 202          

HSP 2 Score: 30.0314 bits (66), Expect = 4.945e-12
Identity = 11/23 (47.83%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  580 GALPLYWNYNYGETGEALKVDIL 648
            G + + +NYNYG  GEA+  D+L
Sbjct:  203 GPMQIAYNYNYGAAGEAIGADLL 225          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 4.945e-12
Identity = 34/109 (31.19%), Postives = 51/109 (46.79%), Query Frame = 3
Query:  252 QFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            QFE +   R+     A GF+ Y +F+ AA  +    F  +      ++EVAAFL      TS       GGP +WG CY +       +C  + +  +PC PG +YH +
Sbjct:  105 QFERMLPHRDDAACPARGFYAYRAFVAAAGAFP--AFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNAR--WPCAPGKAYHAR 202          

HSP 2 Score: 30.0314 bits (66), Expect = 4.945e-12
Identity = 11/23 (47.83%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  580 GALPLYWNYNYGETGEALKVDIL 648
            G + + +NYNYG  GEA+  D+L
Sbjct:  203 GPMQIAYNYNYGAAGEAIGADLL 225          
The following BLAST results are available for this feature:
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CHI4_SOLTU6.137e-1330.51Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI12_ORYSJ1.033e-1231.53Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI1_ORYSJ3.815e-1230.91Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSJ4.945e-1231.19Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI4.945e-1231.19Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00335 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00335 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623244 ID=BQ623244; Name=BQ623244; organism=Citrus sinensis; type=EST; length=677bp
GAAATTAAATTTCTAAACGTAGCTCATTTAATTTCCTCCCATTCATTTAG
CTATGAAGCTCAAATGGCAGCGTAGTACTTTTTGCAACGGCAATTTTATC
AGTGCTAGTCATTGTGCATGGCGATGAATCTTCAGTGAAGCCATTAGTGA
AGATTGTGAAGGGCAAGAAATTGTGTGACAAAGGGTGGGAGTGTAAAGGA
TGGTCTGAGTATTGCTGCAATCAAACGATATCGGATTACTTTCAGACTTA
CCAATTTGAGAACCTTTTTGCAAAGCGTAACACCCCTGTGGCTCATGCTG
TTGGGTTTTGGGACTACCATTCTTTTATAACCGCTGCTGCTTTATATCAG
CCTCATGGGTTTGGTACCAGTGCAGGAAAGCTCATGGGTCAAAAGGAAGT
TGCTGCTTTTCTTGGCCACGTTGGAAGCAAAACCTCGTGTGGGTATGGAG
TGGCAACTGGTGGACCATTGGCTTGGGGTCTATGCTACAACAAGGAGATG
AGTCCTAACCAGATATACTGCGATGATGACTTCAAATACACATATCCTTG
CACTCCTGGAGTTTCATATCATGGGCAGCGGTGCCTTGCCCCTCTACTGG
AACTACAACTATGGGGAAACAGGAGAAGCCCTAAAAGTTGATATATTGAC
CACCCAGAGTACATAGAAACAATGCGA
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