BQ623254

Overview
NameBQ623254
Unique NameBQ623254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2880 contig Csv1_Contig2880:781..1467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 2.090e-107
Identity = 189/206 (91.75%), Postives = 201/206 (97.57%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 618
            +KPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGM+VTFGP+GLTTEVKSVEMHHESLLEALPGDNVGFNVKNV+VKDLKRGYVASNSKDDPAK A+NFT+QVIIMNHPGQI NGYAPVLDCHTSHIAVKFAEI TKIDRRSGKELE  PKFLKNGDAGFVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIKSV+KK+P+G
Sbjct:  231 EKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVEKKEPTG 436          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 387.882 bits (995), Expect = 2.729e-107
Identity = 189/206 (91.75%), Postives = 200/206 (97.09%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 618
            DKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGM+VTFGP+GLTTEVKSVEMHHESLLEALPGDNVGFNVKNV+VKDLKRG+VASNSKDDPAK A+NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKELE  PKFLKNGDAG VKMIPTKPMVVETF+ YPPLGRFAVRDMRQTVAVGVIK V+KKDP+G
Sbjct:  231 DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEALPKFLKNGDAGIVKMIPTKPMVVETFATYPPLGRFAVRDMRQTVAVGVIKGVEKKDPTG 436          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 386.341 bits (991), Expect = 7.941e-107
Identity = 188/206 (91.26%), Postives = 200/206 (97.09%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 618
            DKPL LPLQDVYKIGGIGTVPVGRVETGV+KPGM+VTFGP+GLTTEVKSVE+HHESLLEALPGDNVGFNVKNV+VKDLKRGYVASNSKDDPAK A+NFT+QVIIMNHPGQI NGYAPVLDCHTSHIAVKFAEI TKIDRRSGKELE  PKFLKNGDAGFVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIKSV+KK+P+G
Sbjct:  231 DKPLHLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEVHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVEKKEPTG 436          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 3.017e-106
Identity = 187/206 (90.78%), Postives = 199/206 (96.60%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 618
            DKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGM+VTF P+GLTTEVKSVEMHHE+L EALPGDNV FNVKNV+VKDLK G VASNSKDDPAK A+NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKE+EKEPKFLKNGDAG VKMIPTKPMVVETF+EYPPLGRFAVRDMRQTVAVGVIKSV+KKDP+G
Sbjct:  231 DKPLRLPLQDVYKIGGIGTVPVGRVETGVVKPGMLVTFAPTGLTTEVKSVEMHHEALTEALPGDNVRFNVKNVAVKDLKHGLVASNSKDDPAKDAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.454e-92
Identity = 163/206 (79.13%), Postives = 184/206 (89.32%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 618
            DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM+VTF P  LTTEVKSVEMHHESL EA+PGDNVGFN+KNVSVK+++RGYVA +SK+DP K A++F +QVII+NHPGQI  GYAPVLDCHT+HIA KF E++ KIDRRSGK+LE  PKF+K+GDA  VK+IP KPMVVE FS YPPLGRFAVRDMRQTVAVGVIK+VD K+ SG
Sbjct:  243 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPPNLTTEVKSVEMHHESLPEAVPGDNVGFNIKNVSVKEIRRGYVAGDSKNDPPKAAASFNAQVIILNHPGQINQGYAPVLDCHTAHIACKFNELIEKIDRRSGKKLEDNPKFVKSGDAAIVKLIPQKPMVVEPFSNYPPLGRFAVRDMRQTVAVGVIKAVDTKEISG 448          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A3_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 337.035 bits (863), Expect = 5.525e-92
Identity = 164/202 (81.19%), Postives = 183/202 (90.59%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 606
            +KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTF PS +TTEVKSVEMHHE+L+EALPGDNVGFNVKN+SVKD++RG VA +SK+DP   A +FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFAE+  KIDRRSGK+LE +PKFLK+GDA  V+MIP KPM VETFS+YPPLGRFAVRDMRQTVAVGVIK VDKK
Sbjct:  243 NKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFAPSNVTTEVKSVEMHHEALVEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPPLGRFAVRDMRQTVAVGVIKGVDKK 444          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 7.216e-92
Identity = 160/206 (77.67%), Postives = 185/206 (89.81%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 618
            DKPLRLPLQDVYKIGGIGTVPVGRVETG++K GM+VTF PS +TTEVKSVEMHHE L E  PGDNVGFNVKNVSVKD++RG VAS+SK+DPAK A++F +QVI++NHPGQIG GYAPVLDCHT+HIA KFAE+L KIDRR+GK LE  PKF+K+GDA  VK++P+KPM VE+++EYPPLGRFAVRDMRQTVAVG+IKSVDK D SG
Sbjct:  241 DKPLRLPLQDVYKIGGIGTVPVGRVETGIIKAGMVVTFAPSNVTTEVKSVEMHHEQLAEGKPGDNVGFNVKNVSVKDIRRGNVASDSKNDPAKEAASFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKSLEASPKFVKSGDACIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGIIKSVDKTDKSG 446          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_ABSGL (Elongation factor 1-alpha OS=Absidia glauca GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 9.424e-92
Identity = 160/206 (77.67%), Postives = 186/206 (90.29%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 618
            DKPLRLPLQDVYKIGGIGTVPVGRVETGV+K GM+VTF P+ +TTEVKSVEMHHE L+E LPGDNVGFNVKNVSVKD++RG V S+SK+DPAK A +FT+QVI++NHPGQIG GYAPVLDCHT+HIA KFAE+L KIDRRSGK+LE  PKF+K+GD+  VKMIP+KPM VE +++YPPLGRFAVRDMRQTVAVGVIK+V+K D +G
Sbjct:  241 DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKAGMVVTFAPANVTTEVKSVEMHHEQLVEGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKEAGSFTAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 446          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 335.88 bits (860), Expect = 1.231e-91
Identity = 161/206 (78.16%), Postives = 183/206 (88.83%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 618
            DKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPG +VTF P+ +TTEVKS+EMHHE L EA PGDNVGFNVKNVSVKD++RG V  N+K+DP K A++FT+QVII+NHPGQIGNGYAPVLDCHTSHIA KFAEI +KIDRRSGKELEK PK +K+GDA  V+M+P KPM VE F++Y PLGRFAVRDMRQTVAVG+IK+V KKD SG
Sbjct:  231 DKPLRLPLQDVYKIGGIGTVPVGRVETGVMKPGDVVTFAPANVTTEVKSIEMHHEQLAEATPGDNVGFNVKNVSVKDIRRGNVCGNTKNDPPKEAADFTAQVIILNHPGQIGNGYAPVLDCHTSHIACKFAEIESKIDRRSGKELEKAPKSIKSGDAAIVRMVPQKPMCVEVFNDYAPLGRFAVRDMRQTVAVGIIKAVTKKDGSG 436          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_ONCVO (Elongation factor 1-alpha OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 1.607e-91
Identity = 161/206 (78.16%), Postives = 182/206 (88.35%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 618
            DKPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGMIVTF P  LTTEVKSVEMHHE+L EALPGDNVGFNVKN+S+KD++RG VAS+SK+DPAK    FT+QVIIMNHPGQI  GY PVLDCHT+HIA KFAE+  K+DRRSGK++E  PK LK+GDAG + +IPTKP+ VETF+EYPPLGRFAVRDMRQTVAVGVIK+VDK +  G
Sbjct:  243 DKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMIVTFAPQNLTTEVKSVEMHHEALQEALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKETKMFTAQVIIMNHPGQISAGYTPVLDCHTAHIACKFAELKEKVDRRSGKKVEDNPKSLKSGDAGIIDLIPTKPLCVETFTEYPPLGRFAVRDMRQTVAVGVIKNVDKSEGVG 448          
The following BLAST results are available for this feature:
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A2_HORVU2.090e-10791.75Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]
EF1A_WHEAT2.729e-10791.75Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A1_HORVU7.941e-10791.26Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ... [more]
EF1A_PEA3.017e-10690.78Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A_ORYLA1.454e-9279.13Elongation factor 1-alpha OS=Oryzias latipes GN=ee... [more]
EF1A3_XENLA5.525e-9281.19Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A_SCHCO7.216e-9277.67Elongation factor 1-alpha OS=Schizophyllum commune... [more]
EF1A_ABSGL9.424e-9277.67Elongation factor 1-alpha OS=Absidia glauca GN=TEF... [more]
EF1A_TRYBB1.231e-9178.16Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]
EF1A_ONCVO1.607e-9178.16Elongation factor 1-alpha OS=Onchocerca volvulus P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00345 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00345 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623254 ID=BQ623254; Name=BQ623254; organism=Citrus sinensis; type=EST; length=687bp
GACAAGCCTCTCCGTCTCCCCCTTCAGGATGTCTACAAGATTGGTGGTAT
TGGAACTGTCCCTGTTGGCCGTGTTGAAACTGGTGTACTCAAGCCCGGTA
TGATAGTCACATTCGGTCCATCTGGATTGACTACTGAAGTTAAGTCAGTT
GAGATGCACCATGAGTCTCTCCTGGAGGCACTTCCTGGTGATAATGTGGG
GTTCAACGTTAAGAATGTTTCAGTGAAGGATCTTAAGCGTGGTTACGTTG
CATCTAACTCCAAGGATGATCCCGCCAAGGGGGCATCCAACTTCACCTCC
CAAGTTATCATCATGAACCACCCTGGCCAGATTGGAAACGGTTATGCACC
TGTTCTTGATTGCCACACTTCCCACATTGCTGTCAAGTTTGCTGAAATCT
TGACCAAGATTGACAGGCGATCTGGTAAGGAGCTGGAGAAGGAGCCCAAA
TTCTTAAAGAATGGTGATGCTGGGTTTGTTAAGATGATTCCCACCAAGCC
TATGGTTGTGGAAACTTTCTCCGAATATCCCCCACTTGGTCGTTTTGCTG
TGAGAGACATGCGCCAGACTGTCGCTGTTGGAGTCATCAAGAGCGTGGAC
AAGAAGGATCCATCTGGAGCCAAGGTAACCAAGTCTGCTGCCAAGAAGAA
GTGAACCGTGCTGGTATCTTTGTCTGCAAGTAATGTG
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