BQ623254

Overview
NameBQ623254
Unique NameBQ623254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2880 contig Csv1_Contig2880:781..1467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_NEUCR (Elongation factor 1-alpha OS=Neurospora crassa GN=tef-1 PE=3 SV=2)

HSP 1 Score: 334.339 bits (856), Expect = 3.581e-91
Identity = 157/201 (78.11%), Postives = 182/201 (90.55%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 603
            DKPLRLPLQDVYKIGGIGTVPVGR+ETGVLKPGM+VTF PS +TTEVKSVEMHHE L + +PGDNVGFNVKNVSVKD++RG VA +SK+DP  GA++FT+QVI++NHPGQ+G GYAPVLDCHT+HIA KFAE+L KIDRR+GK +E  PKF+K+GDA  VKMIP+KPM VE F++YPPLGRFAVRDMRQTVAVGVIK+VDK
Sbjct:  242 DKPLRLPLQDVYKIGGIGTVPVGRIETGVLKPGMVVTFAPSNVTTEVKSVEMHHEQLAQGVPGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPAGAASFTAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKAVEASPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVDK 442          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A2_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis GN=eef1ao PE=1 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 3.581e-91
Identity = 164/204 (80.39%), Postives = 182/204 (89.22%), Query Frame = 1
Query:    4 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPS 615
            KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTF PS +TTEVKSVEMHHE+L EALPGDNVGFNVKN+SVKD++RG VA +SK+DP   A +FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFAE+  KIDRRSGK+LE +PKFLK+GDA  V+MIP KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK VDKK  S
Sbjct:  244 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFAPSNVTTEVKSVEMHHEALQEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKGVDKKAAS 447          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_SORMA (Elongation factor 1-alpha OS=Sordaria macrospora GN=TEF PE=3 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 4.677e-91
Identity = 157/201 (78.11%), Postives = 182/201 (90.55%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 603
            DKPLRLPLQDVYKIGGIGTVPVGR+ETGVLKPGM+VTF PS +TTEVKSVEMHHE L + +PGDNVGFNVKNVSVKD++RG VA +SK+DP  GA++FT+QVI++NHPGQ+G GYAPVLDCHT+HIA KFAE+L KIDRR+GK +E  PKF+K+GDA  VKMIP+KPM VE F++YPPLGRFAVRDMRQTVAVGVIK+VDK
Sbjct:  242 DKPLRLPLQDVYKIGGIGTVPVGRIETGVLKPGMVVTFAPSNVTTEVKSVEMHHEQLAQGVPGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPVGAASFTAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKAVETSPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVDK 442          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_PIRIN (Elongation factor 1-alpha OS=Piriformospora indica GN=TEF1 PE=2 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 7.978e-91
Identity = 156/206 (75.73%), Postives = 186/206 (90.29%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 618
            DKPLRLPLQDVYKIGGIGTVPVGRVETG++KPGM+V+F PS +TTEVKSVEMHHE L E LPGDNVGFNVKNVSVKD++RG VAS+SK+DPAK A++F +QVI++NHPGQIG GYAPVLDCHT+HIA KF+E++ KIDRR+GK +E  PKF+K+GDA  VK++P+KPM VE+++EYPPLGRFAVRDMRQTVAVGVIKSV+K +  G
Sbjct:  243 DKPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVSFAPSNVTTEVKSVEMHHEQLAEGLPGDNVGFNVKNVSVKDIRRGDVASDSKNDPAKEAASFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFSELIEKIDRRTGKTMEAAPKFVKSGDAAIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGVIKSVEKTEGKG 448          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_EUGGR (Elongation factor 1-alpha OS=Euglena gracilis GN=TEF PE=2 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.042e-90
Identity = 164/206 (79.61%), Postives = 185/206 (89.81%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 618
            DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG +VTF P+ LTTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVKD++RGYVASN+K+DPAK A++FT+QVII+NHPGQIGNGYAPVLDCHT HIA KFA I TKIDRRSGKELE EPKF+K+GDA  V M P KPM VE+F++YPPLG  +  DMRQTVAVGVIKSV+KK+ +G
Sbjct:  231 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGDVVTFAPNNLTTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKDIRRGYVASNAKNDPAKEAADFTAQVIILNHPGQIGNGYAPVLDCHTCHIACKFATIQTKIDRRSGKELEAEPKFIKSGDAAIVLMKPQKPMCVESFTDYPPLG-VSCGDMRQTVAVGVIKSVNKKENTG 435          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1AC_PORPU (Elongation factor 1-alpha C OS=Porphyra purpurea GN=TEF-C PE=2 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.361e-90
Identity = 158/206 (76.70%), Postives = 183/206 (88.83%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 618
            DKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGM+VTF PSGL+TEVKSVEMHHE+L +A PGDNVGFNVKNVSVKDLKRGYV  +SK+DP KG ++F +QVII+NHPG+I  GYAPVLDCHT+HIA KF+E++ K+DRRSGK+LE  PK +K+GDA  VKM+ +KPM VE F+ YPPLGRFAVRDMRQTVAVGVIKSV+KK+  G
Sbjct:  235 DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPSGLSTEVKSVEMHHEALTQAGPGDNVGFNVKNVSVKDLKRGYVCGDSKNDPPKGCASFNAQVIILNHPGEIHAGYAPVLDCHTAHIACKFSELILKMDRRSGKKLEDSPKMIKSGDAAMVKMVASKPMCVEAFTSYPPLGRFAVRDMRQTVAVGVIKSVEKKEVEG 440          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_ARXAD (Elongation factor 1-alpha OS=Arxula adeninivorans GN=TEF PE=3 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.777e-90
Identity = 158/203 (77.83%), Postives = 181/203 (89.16%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 609
            DKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGM+VTF P+G+TTEVKSVEMHHE L E LPGDNVGFNVKNVSVK+++RG VA +SK+DP KG  +FT+QVII NHPGQI  GY+PVLDCHT+HIA +F E++ KIDRRSGK++E  PKF+K GDA  V+MIP+KPM VETF+EYPPLGRFAVRDMRQTVAVGVIKSV+K D
Sbjct:  241 DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLPEGLPGDNVGFNVKNVSVKEIRRGNVAGDSKNDPPKGCDSFTAQVIIFNHPGQISAGYSPVLDCHTAHIACRFDELIEKIDRRSGKKVEDSPKFVKAGDAAIVRMIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSVEKSD 443          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_CHICK (Elongation factor 1-alpha 1 OS=Gallus gallus GN=EEF1A PE=2 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 2.321e-90
Identity = 163/202 (80.69%), Postives = 180/202 (89.11%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 606
            DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM+VTF P  +TTEVKSVEMHHE+L EALPGDNVGFNVKNVSVKD++RG VA +SK+DP   A+ FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFAE+  KIDRRSGK+LE  PKFLK+GDA  V MIP KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+VDKK
Sbjct:  243 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A0_XENLA (Elongation factor 1-alpha, somatic form OS=Xenopus laevis GN=eef1as PE=2 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 2.321e-90
Identity = 161/202 (79.70%), Postives = 181/202 (89.60%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 606
            DKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGM+VTF P  +TTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVKD++RG VA +SK+DP   A +FT+QVII+NHPGQIG GYAPVLDCHT+HIA KFAE+  KIDRRSGK+LE  PKFLK+GDA  V MIP KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  243 DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPVNVTTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAGSFTAQVIILNHPGQIGAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDNPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVEKK 444          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A1_RAT (Elongation factor 1-alpha 1 OS=Rattus norvegicus GN=Eef1a1 PE=2 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 3.032e-90
Identity = 162/202 (80.20%), Postives = 180/202 (89.11%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 606
            DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM+VTF P  +TTEVKSVEMHHE+L EALPGDNVGFNVKNVSVKD++RG VA +SK+DP   A+ FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFAE+  KIDRRSGK+LE  PKFLK+GDA  V M+P KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+VDKK
Sbjct:  243 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
The following BLAST results are available for this feature:
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_NEUCR3.581e-9178.11Elongation factor 1-alpha OS=Neurospora crassa GN=... [more]
EF1A2_XENLA3.581e-9180.39Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A_SORMA4.677e-9178.11Elongation factor 1-alpha OS=Sordaria macrospora G... [more]
EF1A_PIRIN7.978e-9175.73Elongation factor 1-alpha OS=Piriformospora indica... [more]
EF1A_EUGGR1.042e-9079.61Elongation factor 1-alpha OS=Euglena gracilis GN=T... [more]
EF1AC_PORPU1.361e-9076.70Elongation factor 1-alpha C OS=Porphyra purpurea G... [more]
EF1A_ARXAD1.777e-9077.83Elongation factor 1-alpha OS=Arxula adeninivorans ... [more]
EF1A_CHICK2.321e-9080.69Elongation factor 1-alpha 1 OS=Gallus gallus GN=EE... [more]
EF1A0_XENLA2.321e-9079.70Elongation factor 1-alpha, somatic form OS=Xenopus... [more]
EF1A1_RAT3.032e-9080.20Elongation factor 1-alpha 1 OS=Rattus norvegicus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00345 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00345 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623254 ID=BQ623254; Name=BQ623254; organism=Citrus sinensis; type=EST; length=687bp
GACAAGCCTCTCCGTCTCCCCCTTCAGGATGTCTACAAGATTGGTGGTAT
TGGAACTGTCCCTGTTGGCCGTGTTGAAACTGGTGTACTCAAGCCCGGTA
TGATAGTCACATTCGGTCCATCTGGATTGACTACTGAAGTTAAGTCAGTT
GAGATGCACCATGAGTCTCTCCTGGAGGCACTTCCTGGTGATAATGTGGG
GTTCAACGTTAAGAATGTTTCAGTGAAGGATCTTAAGCGTGGTTACGTTG
CATCTAACTCCAAGGATGATCCCGCCAAGGGGGCATCCAACTTCACCTCC
CAAGTTATCATCATGAACCACCCTGGCCAGATTGGAAACGGTTATGCACC
TGTTCTTGATTGCCACACTTCCCACATTGCTGTCAAGTTTGCTGAAATCT
TGACCAAGATTGACAGGCGATCTGGTAAGGAGCTGGAGAAGGAGCCCAAA
TTCTTAAAGAATGGTGATGCTGGGTTTGTTAAGATGATTCCCACCAAGCC
TATGGTTGTGGAAACTTTCTCCGAATATCCCCCACTTGGTCGTTTTGCTG
TGAGAGACATGCGCCAGACTGTCGCTGTTGGAGTCATCAAGAGCGTGGAC
AAGAAGGATCCATCTGGAGCCAAGGTAACCAAGTCTGCTGCCAAGAAGAA
GTGAACCGTGCTGGTATCTTTGTCTGCAAGTAATGTG
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