BQ623254

Overview
NameBQ623254
Unique NameBQ623254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2880 contig Csv1_Contig2880:781..1467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_PODCU (Elongation factor 1-alpha OS=Podospora curvicolla GN=TEF PE=3 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 5.171e-90
Identity = 155/201 (77.11%), Postives = 181/201 (90.05%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 603
            DKPLRLPLQDVYKIGGIGTVPVGR+ETG+LKPGM+VTF PS +TTEVKSVEMHHE L E +PGDNVGFNVKNVSVK+++RG VA +SK+DP  GA++F +QVI++NHPGQ+G GYAPVLDCHT+HIA KFAE+L KIDRR+GK +E+ PKF+K+GDA  VKMIP+KPM VE F+EYPPLGRFAVRDMRQTVAVGVIK V+K
Sbjct:  242 DKPLRLPLQDVYKIGGIGTVPVGRIETGILKPGMVVTFAPSNVTTEVKSVEMHHEQLSEGVPGDNVGFNVKNVSVKEIRRGNVAGDSKNDPPLGAASFDAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLQKIDRRTGKAVEESPKFIKSGDAAIVKMIPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKKVEK 442          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_DANRE (Elongation factor 1-alpha OS=Danio rerio GN=eef1a PE=2 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 5.171e-90
Identity = 161/202 (79.70%), Postives = 179/202 (88.61%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 606
            DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM+VTF P+ +TTEVKSVEMHHESL EA PGDNVGFNVKNVSVKD++RG VA +SK+DP   A+NF +QVII+NHPGQI  GYAPVLDCHT+HIA KFAE+  KIDRRSGK+LE  PK LK+GDA  V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKSV+KK
Sbjct:  243 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPANVTTEVKSVEMHHESLTEATPGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPMEAANFNAQVIILNHPGQISQGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDNPKALKSGDAAIVEMVPGKPMCVESFSTYPPLGRFAVRDMRQTVAVGVIKSVEKK 444          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A2_OSCTI (Elongation factor 1-alpha 2 OS=Oscheius tipulae GN=eft-2 PE=3 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 5.171e-90
Identity = 158/206 (76.70%), Postives = 182/206 (88.35%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 618
            D+PLRLPLQDVYKIGGIGTVPVGRVETGV+KPGM+VTF P  +TTEVKSVEMHHESL EA PGDNVGFNVKNVSVKD++RG V S+SK+DPAK + +FT+QVI+MNHPGQIG GY PVLDCHT+HIA KFAE+  K+DRR+GK++E  PKFLK+GDAG V++IPTKP+ VE F++Y PLGRFAVRDMRQTVAVGVIK V K D SG
Sbjct:  243 DRPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAQPGDNVGFNVKNVSVKDIRRGSVCSDSKNDPAKESKSFTAQVIVMNHPGQIGAGYTPVLDCHTAHIACKFAELKEKVDRRTGKKVEDPPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDDGSG 448          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_PODAN (Elongation factor 1-alpha OS=Podospora anserina GN=TEF PE=3 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 8.820e-90
Identity = 153/201 (76.12%), Postives = 181/201 (90.05%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 603
            DKPLRLPLQDVYKIGGIGTVPVGR+ETG+LKPGM+VTF PS +TTEVKSVEMHHE L E +PGDNVGFNVKNVSVK+++RG VA +SK+DP  GA++F +QVI++NHPGQ+G GYAPVLDCHT+HIA KF+E+L KIDRR+GK +E+ PKF+K+GDA  VKM+P+KPM VE F+EYPPLGRFAVRDMRQTVAVGVIK V+K
Sbjct:  242 DKPLRLPLQDVYKIGGIGTVPVGRIETGILKPGMVVTFAPSNVTTEVKSVEMHHEQLAEGVPGDNVGFNVKNVSVKEIRRGNVAGDSKNDPPMGAASFDAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELLQKIDRRTGKAVEESPKFIKSGDAAIVKMVPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKKVEK 442          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A3_OSCTI (Elongation factor 1-alpha 3 OS=Oscheius tipulae GN=eft-3 PE=3 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 8.820e-90
Identity = 159/206 (77.18%), Postives = 180/206 (87.38%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 618
            D+PLRLPLQDVYKIGGIGTVPVGRVETGV+KPGM+VTF P  +TTEVKSVEMHHESL EA PGDNVGFNVKNVSVKD++RG V S+SK+DPAK + NFT+QVI+MNHPGQI  GY PVLDCHT+HIA KFAE+  K+DRR+GK  E  PKFLK+GDAG V++IPTKP  VE+F++Y PLGRFAVRDMRQTVAVGVIKSV K D SG
Sbjct:  244 DRPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPQNVTTEVKSVEMHHESLPEASPGDNVGFNVKNVSVKDIRRGSVCSDSKNDPAKESKNFTAQVIVMNHPGQISAGYTPVLDCHTAHIACKFAELKEKVDRRTGKSTEASPKFLKSGDAGIVELIPTKPPCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVTKDDGSG 449          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A1_OSCTI (Elongation factor 1-alpha 1 OS=Oscheius tipulae GN=eft-1 PE=3 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 8.820e-90
Identity = 158/206 (76.70%), Postives = 182/206 (88.35%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 618
            D+PLRLPLQDVYKIGGIGTVPVGRVETGV+KPGM+VTF P  +TTEVKSVEMHHESL EA PGDNVGFNVKNVSVKD++RG V S+SK+DPAK + +FT+QVI+MNHPGQIG GY PVLDCHT+HIA KFAE+  K+DRR+GK++E  PKFLK+GDAG V++IPTKP+ VE F++Y PLGRFAVRDMRQTVAVGVIK V K D SG
Sbjct:  243 DRPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAQPGDNVGFNVKNVSVKDIRRGSVCSDSKNDPAKESKSFTAQVIVMNHPGQIGAGYTPVLDCHTAHIACKFAELKEKVDRRTGKKVEDLPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDDGSG 448          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_ARTSA (Elongation factor 1-alpha OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 328.946 bits (842), Expect = 1.505e-89
Identity = 154/205 (75.12%), Postives = 184/205 (89.76%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPS 615
            +KPLRLPLQDVYKIGGIGTVPVGRVETG++KPGMIVTF P+ +TTEVKSVEMHHESL +A PGDNVGFNVKNVSVK+L+RGYVAS+SK++PA+G+ +F +QVI++NHPGQI NGY PVLDCHT+HIA KFAEI  K DRR+GK  E EPKF+K+GDA  + ++P+KP+ VE FS++PPLGRFAVRDMRQTVAVGVIKSV+ KDP+
Sbjct:  243 EKPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMIVTFAPANITTEVKSVEMHHESLEQASPGDNVGFNVKNVSVKELRRGYVASDSKNNPARGSQDFFAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEAEPKFIKSGDAAMITLVPSKPLCVEAFSDFPPLGRFAVRDMRQTVAVGVIKSVNFKDPT 447          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_AURPU (Elongation factor 1-alpha OS=Aureobasidium pullulans GN=TEF1 PE=3 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 1.965e-89
Identity = 154/206 (74.76%), Postives = 180/206 (87.38%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 618
            DKPLRLPLQDVYKIGGIGTVPVGRVETG +K GM+VTF P+G+TTEVKSVEMHHE L E LPGDNVGFNVKNVSVK+++RG VA +SK+DP KG  +F +QVI++NHPGQ+G GYAPVLDCHT+HIA KF+E++ KIDRR+GK +E  PKF+K+GDA  VKM+P+KPM VE F++YPPLGRFAVRDMRQTVAVGVIKSV K D  G
Sbjct:  240 DKPLRLPLQDVYKIGGIGTVPVGRVETGTIKGGMVVTFAPAGVTTEVKSVEMHHEQLSEGLPGDNVGFNVKNVSVKEIRRGNVAGDSKNDPPKGCDSFNAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELVEKIDRRTGKSVEAAPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVAKSDKQG 445          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A1_HORSE (Elongation factor 1-alpha 1 OS=Equus caballus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 1.965e-89
Identity = 161/202 (79.70%), Postives = 179/202 (88.61%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 606
            DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM+VTF P  +TTEVKSVEMHHE+L EALPGDNVGFNVKNVSVKD++RG VA +SK+DP   A+ FT+QVII+NHPGQI  GYAPV DCHT+HIA KFAE+  KIDRRSGK+LE  PKFLK+GDA  V M+P KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+VDKK
Sbjct:  243 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVPDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_STYLE (Elongation factor 1-alpha OS=Stylonychia lemnae GN=EFAA PE=3 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.566e-89
Identity = 156/206 (75.73%), Postives = 181/206 (87.86%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 618
            DKPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGM++TF P  +TTE KSVEMHHESL EA PGDNVGF VKN+SVKDL+RGYVAS+SK+DPAK  +NF +QVI++NHPGQI  GYAPVLDCHT+HIA KF EI +K+DRRSGK LE+EPKF+K+G+A  V+M+P KPM VE F++YPPLGRFAVRDM+QTVAVGVIK V KK+  G
Sbjct:  231 DKPLRLPLQDVYKIGGIGTVPVGRVETGLLKPGMVLTFAPMNITTECKSVEMHHESLTEAEPGDNVGFTVKNLSVKDLRRGYVASDSKNDPAKDTTNFLAQVIVLNHPGQIQKGYAPVLDCHTAHIACKFDEIESKVDRRSGKVLEEEPKFIKSGEAALVRMVPQKPMCVEAFNQYPPLGRFAVRDMKQTVAVGVIKEVVKKEQKG 436          
The following BLAST results are available for this feature:
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_PODCU5.171e-9077.11Elongation factor 1-alpha OS=Podospora curvicolla ... [more]
EF1A_DANRE5.171e-9079.70Elongation factor 1-alpha OS=Danio rerio GN=eef1a ... [more]
EF1A2_OSCTI5.171e-9076.70Elongation factor 1-alpha 2 OS=Oscheius tipulae GN... [more]
EF1A_PODAN8.820e-9076.12Elongation factor 1-alpha OS=Podospora anserina GN... [more]
EF1A3_OSCTI8.820e-9077.18Elongation factor 1-alpha 3 OS=Oscheius tipulae GN... [more]
EF1A1_OSCTI8.820e-9076.70Elongation factor 1-alpha 1 OS=Oscheius tipulae GN... [more]
EF1A_ARTSA1.505e-8975.12Elongation factor 1-alpha OS=Artemia salina PE=1 S... [more]
EF1A_AURPU1.965e-8974.76Elongation factor 1-alpha OS=Aureobasidium pullula... [more]
EF1A1_HORSE1.965e-8979.70Elongation factor 1-alpha 1 OS=Equus caballus GN=E... [more]
EF1A_STYLE2.566e-8975.73Elongation factor 1-alpha OS=Stylonychia lemnae GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00345 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00345 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623254 ID=BQ623254; Name=BQ623254; organism=Citrus sinensis; type=EST; length=687bp
GACAAGCCTCTCCGTCTCCCCCTTCAGGATGTCTACAAGATTGGTGGTAT
TGGAACTGTCCCTGTTGGCCGTGTTGAAACTGGTGTACTCAAGCCCGGTA
TGATAGTCACATTCGGTCCATCTGGATTGACTACTGAAGTTAAGTCAGTT
GAGATGCACCATGAGTCTCTCCTGGAGGCACTTCCTGGTGATAATGTGGG
GTTCAACGTTAAGAATGTTTCAGTGAAGGATCTTAAGCGTGGTTACGTTG
CATCTAACTCCAAGGATGATCCCGCCAAGGGGGCATCCAACTTCACCTCC
CAAGTTATCATCATGAACCACCCTGGCCAGATTGGAAACGGTTATGCACC
TGTTCTTGATTGCCACACTTCCCACATTGCTGTCAAGTTTGCTGAAATCT
TGACCAAGATTGACAGGCGATCTGGTAAGGAGCTGGAGAAGGAGCCCAAA
TTCTTAAAGAATGGTGATGCTGGGTTTGTTAAGATGATTCCCACCAAGCC
TATGGTTGTGGAAACTTTCTCCGAATATCCCCCACTTGGTCGTTTTGCTG
TGAGAGACATGCGCCAGACTGTCGCTGTTGGAGTCATCAAGAGCGTGGAC
AAGAAGGATCCATCTGGAGCCAAGGTAACCAAGTCTGCTGCCAAGAAGAA
GTGAACCGTGCTGGTATCTTTGTCTGCAAGTAATGTG
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