BQ623254

Overview
NameBQ623254
Unique NameBQ623254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2880 contig Csv1_Contig2880:781..1467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EFTU_BURP0 (Elongation factor Tu OS=Burkholderia pseudomallei (strain 1106a) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 56/202 (27.72%), Postives = 95/202 (47.03%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 597
            D    +P++DV+ I G GTV  GRVE GV+K G    IV    +  TT    VEM  + L +   GDNVG  ++    +D++RG V   +K       ++FT++V +++     G  + P  + +      +  ++   I      EL K+ + +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  210 DGAFLMPVEDVFSISGRGTVVTGRVERGVIKVGEEIEIVGIKATAKTT-CTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVL--AKPGSITPHTHFTAEVYVLSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSI------ELPKDKEMVMPGDNVSITVKLIAPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EFTU_BURMS (Elongation factor Tu OS=Burkholderia mallei (strain SAVP1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 56/202 (27.72%), Postives = 95/202 (47.03%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 597
            D    +P++DV+ I G GTV  GRVE GV+K G    IV    +  TT    VEM  + L +   GDNVG  ++    +D++RG V   +K       ++FT++V +++     G  + P  + +      +  ++   I      EL K+ + +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  210 DGAFLMPVEDVFSISGRGTVVTGRVERGVIKVGEEIEIVGIKATAKTT-CTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVL--AKPGSITPHTHFTAEVYVLSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSI------ELPKDKEMVMPGDNVSITVKLIAPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EFTU_BURMA (Elongation factor Tu OS=Burkholderia mallei GN=tuf1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 56/202 (27.72%), Postives = 95/202 (47.03%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 597
            D    +P++DV+ I G GTV  GRVE GV+K G    IV    +  TT    VEM  + L +   GDNVG  ++    +D++RG V   +K       ++FT++V +++     G  + P  + +      +  ++   I      EL K+ + +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  210 DGAFLMPVEDVFSISGRGTVVTGRVERGVIKVGEEIEIVGIKATAKTT-CTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVL--AKPGSITPHTHFTAEVYVLSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSI------ELPKDKEMVMPGDNVSITVKLIAPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EFTU_BURM9 (Elongation factor Tu OS=Burkholderia mallei (strain NCTC 10229) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 56/202 (27.72%), Postives = 95/202 (47.03%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 597
            D    +P++DV+ I G GTV  GRVE GV+K G    IV    +  TT    VEM  + L +   GDNVG  ++    +D++RG V   +K       ++FT++V +++     G  + P  + +      +  ++   I      EL K+ + +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  210 DGAFLMPVEDVFSISGRGTVVTGRVERGVIKVGEEIEIVGIKATAKTT-CTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVL--AKPGSITPHTHFTAEVYVLSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSI------ELPKDKEMVMPGDNVSITVKLIAPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EFTU_BURM7 (Elongation factor Tu OS=Burkholderia mallei (strain NCTC 10247) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 56/202 (27.72%), Postives = 95/202 (47.03%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 597
            D    +P++DV+ I G GTV  GRVE GV+K G    IV    +  TT    VEM  + L +   GDNVG  ++    +D++RG V   +K       ++FT++V +++     G  + P  + +      +  ++   I      EL K+ + +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  210 DGAFLMPVEDVFSISGRGTVVTGRVERGVIKVGEEIEIVGIKATAKTT-CTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVL--AKPGSITPHTHFTAEVYVLSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSI------ELPKDKEMVMPGDNVSITVKLIAPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EFTU_BACST (Elongation factor Tu OS=Bacillus stearothermophilus GN=tuf PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 54/202 (26.73%), Postives = 92/202 (45.54%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLK---PGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 597
            DKP  +P++DV+ I G GTV  GRVE G LK   P  I+        T V  VEM  + L +A  GDN+G  ++ VS  +++RG V   +K       + F +QV ++    + G  + P    +      +  ++   I    G E+      +  GD   + +    P+ +E  +      +F++R+  +TV  G +  +
Sbjct:  208 DKPFMMPIEDVFSITGRGTVATGRVERGTLKVGDPVEIIGLSDEPKATTVTGVEMFRKLLDQAEAGDNIGALLRGVSRDEVERGQVL--AKPGSITPHTKFKAQVYVLTK--EEGGRHTPFFSNYRPQFYFRTTDVTGIITLPEGVEM------VMPGDNVEMTVELIAPIAIEEGT------KFSIREGGRTVGAGSVSEI 393          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EFTU_AYWBP (Elongation factor Tu OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=tuf PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 56/201 (27.86%), Postives = 95/201 (47.26%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLT--TEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 597
            DKP  +P++DV+ I G GTV  GRVE G +K G  V       T  T V +VEM  + L  A  GDNVG  ++ ++ +D++RG V   +K    K  S F +QV ++    + G  +      +      +  +I   +      EL+ + K +  GD   + +    P+ +E  +      +F++R+  +TV  G +  +
Sbjct:  208 DKPFLMPVEDVFTITGRGTVVTGRVERGQVKAGDEVEIVGLKETRKTIVTAVEMFKKDLEFAQAGDNVGALLRGINREDVQRGQVL--AKPGSVKPHSKFIAQVYVLTK--EEGGRHTAFFSQYRPQFYFRTTDITGVV------ELQGDVKMVMPGDNAELVVTLNNPIAIEEGT------KFSIREGGKTVGAGSVSKL 392          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EFTU_ARATH (Elongation factor Tu, chloroplastic OS=Arabidopsis thaliana GN=TUFA PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 56/199 (28.14%), Postives = 91/199 (45.73%), Query Frame = 1
Query:    7 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTE--VKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 597
            P  L ++DV+ I G GTV  GRVE G +K G  V       T    V  VEM  + L EAL GDNVG  ++ +   D++RG V +     P     +   + II     + G  ++P    +     ++  ++  K+ +    + ++E K +  GD   + +    P+  E         RFA+R+  +TV  GVI ++
Sbjct:  287 PFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDLVGLRETRSYTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAK----PGSITPHTKFEAIIYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTKIM-NDKDEESKMVMPGDRVKIVVELIVPVACEQGM------RFAIREGGKTVGAGVIGTI 474          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EFTU3_STRRA (Elongation factor Tu-3 OS=Streptomyces ramocissimus GN=tuf3 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 55/201 (27.36%), Postives = 92/201 (45.77%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYP--PLGRFAVRDMRQTVAVGVIKSV 597
            D P  LP+++V  I G GTV  G VE G ++ G  V    +GL T V  +E   + + EA  GDNV   ++ V    ++RG+V   +        S F++QV +++   + G    PV   +     ++ A+++  +D                G+ G  +   T  M+VE   E P  P   FA+R+  +TV  G + ++
Sbjct:  207 DAPFLLPVENVLTITGRGTVVTGAVERGTVRVGNRVEVLGAGLETVVTGLETFGKPMDEAQAGDNVALLLRGVPRDAVRRGHVV--AAPGSVVPRSRFSAQVYVLS--AREGGRTTPVTSGYRPQFYIRTADVVGDVDL---------------GEVGVARPGETVSMIVELGREVPLEPGLGFAIREGGRTVGAGTVTAL 388          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EFTU1_STRAW (Elongation factor Tu 1 OS=Streptomyces avermitilis GN=tuf1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 54/204 (26.47%), Postives = 93/204 (45.59%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM---IVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 603
            DKP  +P++DV+ I G GTV  GR+E GVLK      IV       TT V  +EM  + L E   G+NVG  ++ +  +D++RG V    K       + F +Q  I++     G  + P  + +      +  ++   +    G E+      +  GD   + +   +P+ +E         +FA+R+  +TV  G +  ++K
Sbjct:  210 DKPFLMPIEDVFTITGRGTVVTGRIERGVLKVNETVDIVGIKTEKTTTTVTGIEMFRKLLDEGQAGENVGLLLRGIKREDVERGQVI--IKPGSVTPHTEFEAQAYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEM------VMPGDNTEMTVELIQPVAMEEGL------KFAIREGGRTVGAGQVTKINK 397          
The following BLAST results are available for this feature:
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_BURP08.165e-1127.72Elongation factor Tu OS=Burkholderia pseudomallei ... [more]
EFTU_BURMS8.165e-1127.72Elongation factor Tu OS=Burkholderia mallei (strai... [more]
EFTU_BURMA8.165e-1127.72Elongation factor Tu OS=Burkholderia mallei GN=tuf... [more]
EFTU_BURM98.165e-1127.72Elongation factor Tu OS=Burkholderia mallei (strai... [more]
EFTU_BURM78.165e-1127.72Elongation factor Tu OS=Burkholderia mallei (strai... [more]
EFTU_BACST8.165e-1126.73Elongation factor Tu OS=Bacillus stearothermophilu... [more]
EFTU_AYWBP8.165e-1127.86Elongation factor Tu OS=Aster yellows witches'-bro... [more]
EFTU_ARATH8.165e-1128.14Elongation factor Tu, chloroplastic OS=Arabidopsis... [more]
EFTU3_STRRA8.165e-1127.36Elongation factor Tu-3 OS=Streptomyces ramocissimu... [more]
EFTU1_STRAW8.165e-1126.47Elongation factor Tu 1 OS=Streptomyces avermitilis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00345 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00345 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623254 ID=BQ623254; Name=BQ623254; organism=Citrus sinensis; type=EST; length=687bp
GACAAGCCTCTCCGTCTCCCCCTTCAGGATGTCTACAAGATTGGTGGTAT
TGGAACTGTCCCTGTTGGCCGTGTTGAAACTGGTGTACTCAAGCCCGGTA
TGATAGTCACATTCGGTCCATCTGGATTGACTACTGAAGTTAAGTCAGTT
GAGATGCACCATGAGTCTCTCCTGGAGGCACTTCCTGGTGATAATGTGGG
GTTCAACGTTAAGAATGTTTCAGTGAAGGATCTTAAGCGTGGTTACGTTG
CATCTAACTCCAAGGATGATCCCGCCAAGGGGGCATCCAACTTCACCTCC
CAAGTTATCATCATGAACCACCCTGGCCAGATTGGAAACGGTTATGCACC
TGTTCTTGATTGCCACACTTCCCACATTGCTGTCAAGTTTGCTGAAATCT
TGACCAAGATTGACAGGCGATCTGGTAAGGAGCTGGAGAAGGAGCCCAAA
TTCTTAAAGAATGGTGATGCTGGGTTTGTTAAGATGATTCCCACCAAGCC
TATGGTTGTGGAAACTTTCTCCGAATATCCCCCACTTGGTCGTTTTGCTG
TGAGAGACATGCGCCAGACTGTCGCTGTTGGAGTCATCAAGAGCGTGGAC
AAGAAGGATCCATCTGGAGCCAAGGTAACCAAGTCTGCTGCCAAGAAGAA
GTGAACCGTGCTGGTATCTTTGTCTGCAAGTAATGTG
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