BQ623254

Overview
NameBQ623254
Unique NameBQ623254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2880 contig Csv1_Contig2880:781..1467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_PUCGR (Elongation factor 1-alpha OS=Puccinia graminis GN=TEF PE=3 SV=2)

HSP 1 Score: 312.383 bits (799), Expect = 1.457e-84
Identity = 149/203 (73.40%), Postives = 174/203 (85.71%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 609
            DKPLRLPLQDVYKIGGIGTVPVGRVETG +K GM+VTF P+ +TTEVKSVEMHHE L   +PGDNVGFNVKNVSVKD++RG V  ++K DP K A++F +QVI++NHPGQIGNGY PVLDCHT+HIA KF  +  KIDRR+GK LE+ PKF+K+GDA  VKM+P+K M VE F++YPPLGRFAVRDMRQTVAVGVIKSV+K D
Sbjct:  240 DKPLRLPLQDVYKIGGIGTVPVGRVETGTIKAGMVVTFAPANVTTEVKSVEMHHEQLEAGMPGDNVGFNVKNVSVKDIRRGNVCGDTKCDPPKEAASFVAQVIVLNHPGQIGNGYCPVLDCHTAHIACKFDTLQQKIDRRTGKALEEAPKFVKSGDACLVKMVPSKAMCVEPFADYPPLGRFAVRDMRQTVAVGVIKSVEKTD 442          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 3.589e-83
Identity = 149/203 (73.40%), Postives = 170/203 (83.74%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 609
            DKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGM + F P+ +  E KSVEMHHE L EA+PGDNVGFN+K VSVKD++RG VAS++K+DPAK A+ F SQVIIMNHPGQI  GY PVLDCHT+HIA KF  I  KIDRR+GK  E+ PKF+KNGDA  V +IPTK + VE F EYPPLGR+AVRDM+QTVAVGVIK V+KKD
Sbjct:  232 DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMSIQFAPNKVIAECKSVEMHHEQLPEAVPGDNVGFNIKGVSVKDIRRGNVASDAKNDPAKEAATFYSQVIIMNHPGQIQAGYTPVLDCHTAHIACKFETIHDKIDRRTGKSQEENPKFIKNGDAALVTLIPTKALCVEVFQEYPPLGRYAVRDMKQTVAVGVIKKVEKKD 434          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_DICDI (Elongation factor 1-alpha OS=Dictyostelium discoideum GN=eef1a1 PE=1 SV=2)

HSP 1 Score: 305.449 bits (781), Expect = 1.781e-82
Identity = 148/207 (71.50%), Postives = 174/207 (84.06%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKE---PKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDP 612
            DKPLR+PLQDVYKIGGIGTVPVGRVETG++KPGM+VTF P+GL+TEVKSVEMHHE L EA PGDNVGFNVKNVSVK++KRG VA +SK+DP +    F +QVI++NHPGQI  GY+PVLDCHT+HIA KF EI+ K+DRR+G  + KE      LKNGDA  V++ P++PM VE+F+EYPPLGRFAVRDMRQTVAVGVIKS  KK P
Sbjct:  231 DKPLRIPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPAGLSTEVKSVEMHHEQLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAP 437          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_ENTHI (Elongation factor 1-alpha OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 5.183e-82
Identity = 141/200 (70.50%), Postives = 176/200 (88.00%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELE-KEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 597
            DKPLRLPLQDVYKI GIGTVPVGRVETG+LKPG IV F PSG+++E KS+EMHH +L +A+PGDNVGFNV+N++VKD+KRG VAS++K+ PA G  +FT+QVI+MNHPGQI  GY PVLDCHTSHIA KF E+L+KIDRR+GK +E  EP+++KNGD+  VK++PTKP+ VE F+++PPLGRFAVRDM+QTVAVGV+K+V
Sbjct:  229 DKPLRLPLQDVYKISGIGTVPVGRVETGILKPGTIVQFAPSGVSSECKSIEMHHTALAQAIPGDNVGFNVRNLTVKDIKRGNVASDAKNQPAVGCEDFTAQVIVMNHPGQIRKGYTPVLDCHTSHIACKFEELLSKIDRRTGKSMEGGEPEYIKNGDSALVKIVPTKPLCVEEFAKFPPLGRFAVRDMKQTVAVGVVKAV 428          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_PLAFK (Elongation factor 1-alpha OS=Plasmodium falciparum (isolate K1 / Thailand) GN=MEF-1 PE=3 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 4.388e-81
Identity = 140/203 (68.97%), Postives = 173/203 (85.22%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 609
            DKPLR+PLQ VYKIGGIGTVPVGRVETG+LK GM++ F PS + +E KSVEMH E L EA PGDN+GFNVKNVSVK++KRGYVAS++K++PAKG S FT+QVII+NHPG+I NGY P+LDCHTSHI+ KF  I +KID+RSGK +E+ PK +K+GD+  V + P KPMVVETF+EYPPLGRFA+RDMRQT+AVG+I  + +K+
Sbjct:  229 DKPLRIPLQGVYKIGGIGTVPVGRVETGILKAGMVLNFAPSAVVSECKSVEMHKEVLEEARPGDNIGFNVKNVSVKEIKRGYVASDTKNEPAKGCSKFTAQVIILNHPGEIKNGYTPLLDCHTSHISCKFLNIDSKIDKRSGKVVEENPKAIKSGDSALVSLEPKKPMVVETFTEYPPLGRFAIRDMRQTIAVGIINQLKRKN 431          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.277e-80
Identity = 141/201 (70.15%), Postives = 167/201 (83.08%), Query Frame = 1
Query:    4 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 606
            KPLRLPLQDVYKIGGIGTVPVGRVETGVLK GM++TF P G + E KSVEMHHE + EA PG+NVGFNVK +SVKD+KRG+VAS+SK+DPA    +F S  I+MNHPG+I  GY PV+DCHT+HIA KF E+LTK D+RSGK  E+ PKFLK GDAG +++ P+KP+ VETF+ Y PLGRFAVRDMRQTVAVGVI+ + KK
Sbjct:  232 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKAGMVITFAPKGCSAECKSVEMHHEEVPEAAPGNNVGFNVKGLSVKDIKRGFVASDSKNDPATDTESFVSHTIVMNHPGEIKAGYTPVIDCHTAHIACKFEELLTKADKRSGKMTEENPKFLKAGDAGLIRLSPSKPLCVETFATYAPLGRFAVRDMRQTVAVGVIQEIKKK 432          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_SPOFR (Elongation factor 1-alpha (Fragment) OS=Spodoptera frugiperda PE=1 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 8.275e-80
Identity = 137/185 (74.05%), Postives = 163/185 (88.11%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVR 555
            DKPLRLPLQDVYKIGGIGTVPVGRVETG+LKPG IV F P+ +TTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVK+L+RGYVA +SK++P KGA++FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAEI  K+DRR+GK  E  PK +K+GDA  V ++P+KP+ VE+F E+PPLGRFAVR
Sbjct:  229 DKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_HELZE (Elongation factor 1-alpha (Fragment) OS=Heliothis zea PE=3 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 7.005e-79
Identity = 136/185 (73.51%), Postives = 162/185 (87.57%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVR 555
            DK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG IV F P+ +TTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVK+L+RGYVA +SK++P KGA++FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAEI  K+DRR+GK  E  PK +K+GDA  V ++P+KP+ VE+F E+PPLGRFAVR
Sbjct:  229 DKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_HELVI (Elongation factor 1-alpha (Fragment) OS=Heliothis virescens PE=3 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 7.005e-79
Identity = 136/185 (73.51%), Postives = 162/185 (87.57%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVR 555
            DK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG IV F P+ +TTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVK+L+RGYVA +SK++P KGA++FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAEI  K+DRR+GK  E  PK +K+GDA  V ++P+KP+ VE+F E+PPLGRFAVR
Sbjct:  229 DKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_HELGL (Elongation factor 1-alpha (Fragment) OS=Helicoverpa gelotopoeon PE=3 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 7.005e-79
Identity = 136/185 (73.51%), Postives = 162/185 (87.57%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVR 555
            DK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG IV F P+ +TTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVK+L+RGYVA +SK++P KGA++FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAEI  K+DRR+GK  E  PK +K+GDA  V ++P+KP+ VE+F E+PPLGRFAVR
Sbjct:  229 DKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
The following BLAST results are available for this feature:
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_PUCGR1.457e-8473.40Elongation factor 1-alpha OS=Puccinia graminis GN=... [more]
EF1A_TETPY3.589e-8373.40Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A_DICDI1.781e-8271.50Elongation factor 1-alpha OS=Dictyostelium discoid... [more]
EF1A_ENTHI5.183e-8270.50Elongation factor 1-alpha OS=Entamoeba histolytica... [more]
EF1A_PLAFK4.388e-8168.97Elongation factor 1-alpha OS=Plasmodium falciparum... [more]
EF1A1_EUPCR1.277e-8070.15Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]
EF1A_SPOFR8.275e-8074.05Elongation factor 1-alpha (Fragment) OS=Spodoptera... [more]
EF1A_HELZE7.005e-7973.51Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELVI7.005e-7973.51Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELGL7.005e-7973.51Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00345 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00345 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623254 ID=BQ623254; Name=BQ623254; organism=Citrus sinensis; type=EST; length=687bp
GACAAGCCTCTCCGTCTCCCCCTTCAGGATGTCTACAAGATTGGTGGTAT
TGGAACTGTCCCTGTTGGCCGTGTTGAAACTGGTGTACTCAAGCCCGGTA
TGATAGTCACATTCGGTCCATCTGGATTGACTACTGAAGTTAAGTCAGTT
GAGATGCACCATGAGTCTCTCCTGGAGGCACTTCCTGGTGATAATGTGGG
GTTCAACGTTAAGAATGTTTCAGTGAAGGATCTTAAGCGTGGTTACGTTG
CATCTAACTCCAAGGATGATCCCGCCAAGGGGGCATCCAACTTCACCTCC
CAAGTTATCATCATGAACCACCCTGGCCAGATTGGAAACGGTTATGCACC
TGTTCTTGATTGCCACACTTCCCACATTGCTGTCAAGTTTGCTGAAATCT
TGACCAAGATTGACAGGCGATCTGGTAAGGAGCTGGAGAAGGAGCCCAAA
TTCTTAAAGAATGGTGATGCTGGGTTTGTTAAGATGATTCCCACCAAGCC
TATGGTTGTGGAAACTTTCTCCGAATATCCCCCACTTGGTCGTTTTGCTG
TGAGAGACATGCGCCAGACTGTCGCTGTTGGAGTCATCAAGAGCGTGGAC
AAGAAGGATCCATCTGGAGCCAAGGTAACCAAGTCTGCTGCCAAGAAGAA
GTGAACCGTGCTGGTATCTTTGTCTGCAAGTAATGTG
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