BQ623257

Overview
NameBQ623257
Unique NameBQ623257
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623257_ssr417 microsatellite BQ623257_ssr417:417..428. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5285 contig Csv1_Contig5285:374..902. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT_HAEIN (Transketolase OS=Haemophilus influenzae GN=tktA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.950e-16
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 1
Query:   16 FDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 237
            FD+Q  AY+ESVLPAAV+ RV+IEAG    W K VG  G+ IG++ FG SAPA +++K FG T E V+  AKE+
Sbjct:  591 FDKQDAAYRESVLPAAVTKRVAIEAGIADFWYKYVGFNGRVIGMNSFGESAPADQLFKLFGFTVENVVAKAKEI 664          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT2_VIBF1 (Transketolase 2 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=tkt2 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.444e-16
Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    4 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 237
            S + FD+Q +AY+E+VLP+AV+ R++IEAG    W K VG  GK IG+  FG SAPA +++K FG T E V+  AKE+
Sbjct:  584 STDAFDKQDEAYREAVLPSAVTKRIAIEAGIADFWYKYVGFGGKIIGMTTFGESAPADELFKMFGFTTENVVNTAKEL 661          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT2_VIBCH (Transketolase 2 OS=Vibrio cholerae GN=tkt2 PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 8.444e-16
Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    4 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 237
            S + FD+Q  AY+E+VLPAAV+ R++IEAG    W K VG  G+ IG+  FG SAPAG+++K FG T E V+  AKE+
Sbjct:  585 STDAFDKQDAAYREAVLPAAVTKRIAIEAGIADFWYKYVGFGGRIIGMTSFGESAPAGELFKLFGFTTENVVKQAKEL 662          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT1_VIBCH (Transketolase 1 OS=Vibrio cholerae GN=tkt1 PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 8.444e-16
Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    4 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 237
            S + FD+Q  AY+E+VLPAAV+ R++IEAG    W K VG  G+ IG+  FG SAPAG+++K FG T E V+  AKE+
Sbjct:  586 STDAFDKQDAAYREAVLPAAVTKRIAIEAGIADFWYKYVGFGGRIIGMTSFGESAPAGELFKLFGFTTENVVKQAKEL 663          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT_DICDI (Transketolase OS=Dictyostelium discoideum GN=tkt-1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.457e-15
Identity = 38/75 (50.67%), Postives = 52/75 (69.33%), Query Frame = 1
Query:   10 ELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKE 234
            ELFD QS+ YK+SVLP+    R+++EAG T  W K VG  GK IGIDRFG SAP   + K+ G+T+E ++  +K+
Sbjct:  587 ELFDRQSNEYKQSVLPSGCRNRIAMEAGVTSFWYKYVGLDGKVIGIDRFGMSAPGNAVMKQLGMTSENLVNISKQ 661          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT_STAAW (Transketolase OS=Staphylococcus aureus (strain MW2) GN=tkt PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.209e-15
Identity = 35/72 (48.61%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    4 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVI 219
            +W  F++QS+ YKESV+P++V+ RV+IE  S  GW K VG+ GK I ID FGASAP   + +++G T E ++
Sbjct:  585 NWNAFEQQSEEYKESVIPSSVTKRVAIEMASPLGWHKYVGTAGKVIAIDGFGASAPGDLVVEKYGFTKENIL 656          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT_STAAS (Transketolase OS=Staphylococcus aureus (strain MSSA476) GN=tkt PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.209e-15
Identity = 35/72 (48.61%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    4 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVI 219
            +W  F++QS+ YKESV+P++V+ RV+IE  S  GW K VG+ GK I ID FGASAP   + +++G T E ++
Sbjct:  585 NWNAFEQQSEEYKESVIPSSVTKRVAIEMASPLGWHKYVGTAGKVIAIDGFGASAPGDLVVEKYGFTKENIL 656          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT_STAAR (Transketolase OS=Staphylococcus aureus (strain MRSA252) GN=tkt PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.209e-15
Identity = 35/72 (48.61%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    4 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVI 219
            +W  F++QS+ YKESV+P++V+ RV+IE  S  GW K VG+ GK I ID FGASAP   + +++G T E ++
Sbjct:  585 NWNAFEQQSEEYKESVIPSSVTKRVAIEMASPLGWHKYVGTAGKVIAIDGFGASAPGDLVVEKYGFTKENIL 656          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT_STAAN (Transketolase OS=Staphylococcus aureus (strain N315) GN=tkt PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.209e-15
Identity = 35/72 (48.61%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    4 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVI 219
            +W  F++QS+ YKESV+P++V+ RV+IE  S  GW K VG+ GK I ID FGASAP   + +++G T E ++
Sbjct:  585 NWNAFEQQSEEYKESVIPSSVTKRVAIEMASPLGWHKYVGTAGKVIAIDGFGASAPGDLVVEKYGFTKENIL 656          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT_STAAM (Transketolase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=tkt PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.209e-15
Identity = 35/72 (48.61%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    4 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVI 219
            +W  F++QS+ YKESV+P++V+ RV+IE  S  GW K VG+ GK I ID FGASAP   + +++G T E ++
Sbjct:  585 NWNAFEQQSEEYKESVIPSSVTKRVAIEMASPLGWHKYVGTAGKVIAIDGFGASAPGDLVVEKYGFTKENIL 656          
The following BLAST results are available for this feature:
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
TKT_HAEIN4.950e-1655.41Transketolase OS=Haemophilus influenzae GN=tktA PE... [more]
TKT2_VIBF18.444e-1651.28Transketolase 2 OS=Vibrio fischeri (strain ATCC 70... [more]
TKT2_VIBCH8.444e-1652.56Transketolase 2 OS=Vibrio cholerae GN=tkt2 PE=3 SV... [more]
TKT1_VIBCH8.444e-1652.56Transketolase 1 OS=Vibrio cholerae GN=tkt1 PE=3 SV... [more]
TKT_DICDI2.457e-1550.67Transketolase OS=Dictyostelium discoideum GN=tkt-1... [more]
TKT_STAAW3.209e-1548.61Transketolase OS=Staphylococcus aureus (strain MW2... [more]
TKT_STAAS3.209e-1548.61Transketolase OS=Staphylococcus aureus (strain MSS... [more]
TKT_STAAR3.209e-1548.61Transketolase OS=Staphylococcus aureus (strain MRS... [more]
TKT_STAAN3.209e-1548.61Transketolase OS=Staphylococcus aureus (strain N31... [more]
TKT_STAAM3.209e-1548.61Transketolase OS=Staphylococcus aureus (strain Mu5... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00348 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00348 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623257 ID=BQ623257; Name=BQ623257; organism=Citrus sinensis; type=EST; length=529bp
GTTTCTTGGGAGCTTTTTGATGAGCAATCAGATGCCTACAAGGAAAGTGT
GCTTCCGGCTGCTGTCTCAGCTAGAGTTAGCATTGAAGCTGGATCTACAT
TTGGGTGGGAGAAGATTGTTGGAAGCAAAGGAAAGGCCATCGGCATTGAC
CGATTCGGTGCTAGTGCACCAGCAGGCAAAATATACAAGGAGTTTGGTAT
CACCGCGGAGGCTGTTATCACTGCAGCCAAAGAAGTCTGCTAAGCTTGGT
TAGTCAAAAACTTCTTATTATTCCATATGCATTTGGGAATTGGTGATTAC
AGTGAAGAGACCATTCCCAAGAGAGTTGCTTCATTATGGTCTCTCTTGTT
TTAATAAAAGCAAGATTATTTTTCTTCCTTTTGCTTATTATTCCACTGCA
GAGCATCGTAGATTGAAGAGAGAGAGAGGGAGAGAGAGTAGGGCTTGTTC
ATGTTCATGAATTTGTATCAAACTCTTGGACCTATCTTGAGATTTGTAAT
GTTTCCTGTTGATTTTGATGCAAATTTGC
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