BQ623257

Overview
NameBQ623257
Unique NameBQ623257
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623257_ssr417 microsatellite BQ623257_ssr417:417..428. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5285 contig Csv1_Contig5285:374..902. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT_STAAC (Transketolase OS=Staphylococcus aureus (strain COL) GN=tkt PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.209e-15
Identity = 35/72 (48.61%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    4 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVI 219
            +W  F++QS+ YKESV+P++V+ RV+IE  S  GW K VG+ GK I ID FGASAP   + +++G T E ++
Sbjct:  585 NWNAFEQQSEEYKESVIPSSVTKRVAIEMASPLGWHKYVGTAGKVIAIDGFGASAPGDLVVEKYGFTKENIL 656          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT_PHYPO (Transketolase OS=Physarum polycephalum GN=tkt PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.209e-15
Identity = 41/71 (57.75%), Postives = 48/71 (67.61%), Query Frame = 1
Query:   16 FDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAA 228
            FD+Q   YKE VLP++   RV IEAG T  W K VG +GK IGIDRFG SAP   + K  GITA+AV+ AA
Sbjct:  588 FDQQPAEYKEEVLPSSCKKRVVIEAGVTPLWHKYVGLEGKIIGIDRFGTSAPGATVLKTLGITADAVVAAA 658          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT2_VIBVY (Transketolase 2 OS=Vibrio vulnificus (strain YJ016) GN=tkt2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.209e-15
Identity = 39/76 (51.32%), Postives = 54/76 (71.05%), Query Frame = 1
Query:   10 ELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 237
            + FD+Q  AY+ESVLP+ V+AR++IEAG T  W K VG  G+ IG+  FG SAPA ++++ FG T E V+  AKE+
Sbjct:  586 DAFDKQDAAYRESVLPSDVTARIAIEAGITDFWYKYVGFDGRIIGMTTFGESAPADQLFEMFGFTVENVVNTAKEL 661          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT2_PASMU (Transketolase 2 OS=Pasteurella multocida GN=tktB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.209e-15
Identity = 38/78 (48.72%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    4 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 237
            S  +FD+Q  AY+ESVLP+ ++ RV+IEAG    W K VG +G+ +G++ FG SAPA +++K FG T E V+  AKE+
Sbjct:  590 STNVFDKQDAAYRESVLPSHITKRVAIEAGIADFWYKYVGFEGRVVGMNSFGESAPADQLFKLFGFTVENVVAKAKEI 667          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT_BACSU (Transketolase OS=Bacillus subtilis GN=tkt PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 7.148e-15
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    4 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 231
            S + F++QSD YK  VLPA V  R++IE GS+FGW K  G +G  +GIDRFGASAP   I  E+G +   V+   K
Sbjct:  587 SMDRFEKQSDEYKNEVLPADVKKRLAIEMGSSFGWGKYTGLEGDVLGIDRFGASAPGETIINEYGFSVPNVVNRVK 662          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT1_VIBF1 (Transketolase 1 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=tkt1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.148e-15
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    4 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 237
            S + FD+Q + Y+E+V P+AV+ R++IEAG    W K VG  GK IG+  FG SAPA +++K FG T E V+  AKE+
Sbjct:  585 STDAFDKQDEGYREAVFPSAVTKRIAIEAGIADFWYKYVGFGGKIIGMTTFGESAPADELFKMFGFTTENVVNTAKEL 662          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT1_ECOLI (Transketolase 1 OS=Escherichia coli (strain K12) GN=tktA PE=1 SV=5)

HSP 1 Score: 80.1073 bits (196), Expect = 7.148e-15
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    4 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 237
            S + FD+Q  AY+ESVLP AV+ARV++EAG    W K VG  G  +G+  FG SAPA  +++EFG T + V+  AKE+
Sbjct:  585 STDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFGFTVDNVVAKAKEL 662          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT_STAES (Transketolase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=tkt PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.219e-14
Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    4 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 237
            +W  F++QS  YKES+LP+ V+ R++IE  S  GW K VG +GK IGI+ FGASAP   + +++G T E ++   + +
Sbjct:  585 NWYAFEQQSSEYKESILPSDVTKRIAIEMASPLGWHKYVGIEGKVIGINSFGASAPGDLVVEKYGFTKENILKQVRSL 662          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT_STAEQ (Transketolase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=tkt PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.219e-14
Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    4 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 237
            +W  F++QS  YKES+LP+ V+ R++IE  S  GW K VG +GK IGI+ FGASAP   + +++G T E ++   + +
Sbjct:  585 NWYAFEQQSSEYKESILPSDVTKRIAIEMASPLGWHKYVGIEGKVIGINSFGASAPGDLVVEKYGFTKENILKQVRSL 662          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT1_VIBVY (Transketolase 1 OS=Vibrio vulnificus (strain YJ016) GN=tkt1 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.219e-14
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 1
Query:   10 ELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 237
            + FD+Q  AY+ESVLP+ V+AR++IEAG    W K VG  G+ IG+  FG SAPA ++++ FG T E V+  AKE+
Sbjct:  587 DAFDKQDAAYRESVLPSDVTARIAIEAGIADFWYKYVGFDGRIIGMTTFGESAPADQLFEMFGFTVENVVNTAKEL 662          
The following BLAST results are available for this feature:
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
TKT_STAAC3.209e-1548.61Transketolase OS=Staphylococcus aureus (strain COL... [more]
TKT_PHYPO3.209e-1557.75Transketolase OS=Physarum polycephalum GN=tkt PE=2... [more]
TKT2_VIBVY3.209e-1551.32Transketolase 2 OS=Vibrio vulnificus (strain YJ016... [more]
TKT2_PASMU3.209e-1548.72Transketolase 2 OS=Pasteurella multocida GN=tktB P... [more]
TKT_BACSU7.148e-1550.00Transketolase OS=Bacillus subtilis GN=tkt PE=3 SV=... [more]
TKT1_VIBF17.148e-1548.72Transketolase 1 OS=Vibrio fischeri (strain ATCC 70... [more]
TKT1_ECOLI7.148e-1550.00Transketolase 1 OS=Escherichia coli (strain K12) G... [more]
TKT_STAES1.219e-1443.59Transketolase OS=Staphylococcus epidermidis (strai... [more]
TKT_STAEQ1.219e-1443.59Transketolase OS=Staphylococcus epidermidis (strai... [more]
TKT1_VIBVY1.219e-1450.00Transketolase 1 OS=Vibrio vulnificus (strain YJ016... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00348 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00348 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623257 ID=BQ623257; Name=BQ623257; organism=Citrus sinensis; type=EST; length=529bp
GTTTCTTGGGAGCTTTTTGATGAGCAATCAGATGCCTACAAGGAAAGTGT
GCTTCCGGCTGCTGTCTCAGCTAGAGTTAGCATTGAAGCTGGATCTACAT
TTGGGTGGGAGAAGATTGTTGGAAGCAAAGGAAAGGCCATCGGCATTGAC
CGATTCGGTGCTAGTGCACCAGCAGGCAAAATATACAAGGAGTTTGGTAT
CACCGCGGAGGCTGTTATCACTGCAGCCAAAGAAGTCTGCTAAGCTTGGT
TAGTCAAAAACTTCTTATTATTCCATATGCATTTGGGAATTGGTGATTAC
AGTGAAGAGACCATTCCCAAGAGAGTTGCTTCATTATGGTCTCTCTTGTT
TTAATAAAAGCAAGATTATTTTTCTTCCTTTTGCTTATTATTCCACTGCA
GAGCATCGTAGATTGAAGAGAGAGAGAGGGAGAGAGAGTAGGGCTTGTTC
ATGTTCATGAATTTGTATCAAACTCTTGGACCTATCTTGAGATTTGTAAT
GTTTCCTGTTGATTTTGATGCAAATTTGC
back to top