BQ623257

Overview
NameBQ623257
Unique NameBQ623257
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623257_ssr417 microsatellite BQ623257_ssr417:417..428. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5285 contig Csv1_Contig5285:374..902. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT1_VIBPA (Transketolase 1 OS=Vibrio parahaemolyticus GN=tkt1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.592e-14
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    4 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 237
            S + FD+Q  AY+E+VLP+ V+AR++IEAG    W K VG  G+ IG+  FG SAPA ++++ FG T E V+  AKE+
Sbjct:  585 STDAFDKQDAAYREAVLPSDVTARIAIEAGIADFWYKYVGFDGRIIGMTTFGESAPADQLFEMFGFTVENVVNTAKEL 662          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT_STRPN (Probable transketolase OS=Streptococcus pneumoniae GN=tkt PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.716e-14
Identity = 36/78 (46.15%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    4 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 237
            S ++FD+Q  AYKE +LP AV  RV++E G++  W K VG  G  +GID FGASAPA K+  E+G T E ++   + +
Sbjct:  580 STDVFDKQDAAYKEEILPNAVRRRVAVEMGASQNWYKYVGLDGAVLGIDTFGASAPAPKVLAEYGFTVENLVKVVRNL 657          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT2_VIBVU (Transketolase 2 OS=Vibrio vulnificus GN=tkt2 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.716e-14
Identity = 37/76 (48.68%), Postives = 53/76 (69.74%), Query Frame = 1
Query:   10 ELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 237
            + FD+Q  AY+E+VLP+ V+AR++IEAG    W K VG  G+ IG+  FG SAPA ++++ FG T E V+  AKE+
Sbjct:  586 DTFDKQDAAYREAVLPSDVTARIAIEAGIADFWYKYVGFDGRIIGMTTFGESAPADQLFEMFGFTVENVVNTAKEL 661          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT1_VIBVU (Transketolase 1 OS=Vibrio vulnificus GN=tkt1 PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.716e-14
Identity = 37/76 (48.68%), Postives = 53/76 (69.74%), Query Frame = 1
Query:   10 ELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 237
            + FD+Q  AY+E+VLP+ V+AR++IEAG    W K VG  G+ IG+  FG SAPA ++++ FG T E V+  AKE+
Sbjct:  587 DTFDKQDAAYREAVLPSDVTARIAIEAGIADFWYKYVGFDGRIIGMTTFGESAPADQLFEMFGFTVENVVNTAKEL 662          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT1_PASMU (Transketolase 1 OS=Pasteurella multocida GN=tktA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.716e-14
Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    4 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 237
            S  +FD+Q  AY+ESVLP+ ++ RV+IEAG    W K VG +G+ +G++ FG SAPA +++K FG T E ++  AK +
Sbjct:  590 STNVFDKQDAAYRESVLPSHITKRVAIEAGIADFWYKYVGFEGRVVGMNSFGESAPADQLFKLFGFTVENIVEKAKAI 667          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT2_ECOLI (Transketolase 2 OS=Escherichia coli (strain K12) GN=tktB PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.548e-14
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    4 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 237
            S ++FD Q + Y+ESVLP+ V+ARV++EAG    W K VG KG  +G+  +G SAPA K++  FG TAE ++  A +V
Sbjct:  584 STDIFDAQDEEYRESVLPSNVAARVAVEAGIADYWYKYVGLKGAIVGMTGYGESAPADKLFPFFGFTAENIVAKAHKV 661          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT2_VIBPA (Transketolase 2 OS=Vibrio parahaemolyticus GN=tkt2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.903e-14
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    4 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 237
            S + FD+Q   Y+E+VLP+ V+AR++IEAG    W K VG  G+ IG+  FG SAPA ++++ FG T E V+  AKE+
Sbjct:  584 STDAFDKQDADYREAVLPSDVTARIAIEAGIADFWYKYVGFDGRIIGMTTFGESAPADQLFEMFGFTVENVVNTAKEL 661          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT_MYCLE (Transketolase OS=Mycobacterium leprae GN=tkt PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.348e-13
Identity = 35/76 (46.05%), Postives = 52/76 (68.42%), Query Frame = 1
Query:   10 ELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 237
            E F+ Q   Y++SVLP +VSARV++EAG    W K+VG  GK + I+ +G SA    +++E+G T EAV+ AA++V
Sbjct:  621 EWFESQPYEYRDSVLPPSVSARVAVEAGVAQCWHKLVGDTGKIVSIEHYGESADYQTLFREYGFTPEAVVAAAEQV 696          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKTP_RALEH (Transketolase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbTP PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.003e-13
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 1
Query:   10 ELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 231
            ELF  Q  AY++SVLP  +  R+S+EAG+T+ W  +VG +G A+GID FG SAPA  +Y+ FG+T   V  AA+
Sbjct:  592 ELFYAQDAAYRDSVLPPGLP-RISVEAGATWYWRGVVGEQGLALGIDSFGESAPAEALYQHFGLTPAHVAAAAR 664          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKTC_RALEH (Transketolase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbTC PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 8.738e-13
Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 1
Query:   10 ELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 231
            ELF  Q  AY+++VLP  +  RVS+EAG T+ W  +VG +G A+GID FG SAPA  +Y+ FG+T   V  AA+
Sbjct:  592 ELFYAQDVAYRDTVLPPGLP-RVSVEAGGTWFWRGVVGEQGLALGIDTFGESAPAEALYQHFGLTPAHVAAAAR 664          
The following BLAST results are available for this feature:
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
TKT1_VIBPA1.592e-1448.72Transketolase 1 OS=Vibrio parahaemolyticus GN=tkt1... [more]
TKT_STRPN2.716e-1446.15Probable transketolase OS=Streptococcus pneumoniae... [more]
TKT2_VIBVU2.716e-1448.68Transketolase 2 OS=Vibrio vulnificus GN=tkt2 PE=3 ... [more]
TKT1_VIBVU2.716e-1448.68Transketolase 1 OS=Vibrio vulnificus GN=tkt1 PE=3 ... [more]
TKT1_PASMU2.716e-1446.15Transketolase 1 OS=Pasteurella multocida GN=tktA P... [more]
TKT2_ECOLI3.548e-1447.44Transketolase 2 OS=Escherichia coli (strain K12) G... [more]
TKT2_VIBPA7.903e-1447.44Transketolase 2 OS=Vibrio parahaemolyticus GN=tkt2... [more]
TKT_MYCLE1.348e-1346.05Transketolase OS=Mycobacterium leprae GN=tkt PE=3 ... [more]
TKTP_RALEH3.003e-1350.00Transketolase, plasmid OS=Ralstonia eutropha (stra... [more]
TKTC_RALEH8.738e-1350.00Transketolase, chromosomal OS=Ralstonia eutropha (... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00348 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00348 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623257 ID=BQ623257; Name=BQ623257; organism=Citrus sinensis; type=EST; length=529bp
GTTTCTTGGGAGCTTTTTGATGAGCAATCAGATGCCTACAAGGAAAGTGT
GCTTCCGGCTGCTGTCTCAGCTAGAGTTAGCATTGAAGCTGGATCTACAT
TTGGGTGGGAGAAGATTGTTGGAAGCAAAGGAAAGGCCATCGGCATTGAC
CGATTCGGTGCTAGTGCACCAGCAGGCAAAATATACAAGGAGTTTGGTAT
CACCGCGGAGGCTGTTATCACTGCAGCCAAAGAAGTCTGCTAAGCTTGGT
TAGTCAAAAACTTCTTATTATTCCATATGCATTTGGGAATTGGTGATTAC
AGTGAAGAGACCATTCCCAAGAGAGTTGCTTCATTATGGTCTCTCTTGTT
TTAATAAAAGCAAGATTATTTTTCTTCCTTTTGCTTATTATTCCACTGCA
GAGCATCGTAGATTGAAGAGAGAGAGAGGGAGAGAGAGTAGGGCTTGTTC
ATGTTCATGAATTTGTATCAAACTCTTGGACCTATCTTGAGATTTGTAAT
GTTTCCTGTTGATTTTGATGCAAATTTGC
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