BQ623262

Overview
NameBQ623262
Unique NameBQ623262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9230 contig Csv1_Contig9230:409..1047. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.330e-20
Identity = 68/175 (38.86%), Postives = 91/175 (52.00%), Query Frame = 2
Query:    2 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 496
            VI+ R+AMLGA+G   PE+L K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R       G +G     G +  Y GG+ DP               D  S  + K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DH+ADPV NN
Sbjct:   99 VIHSRWAMLGALGCTFPELLEKNGVKFGEAV--WFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYR----VGGGPLGE----GLDPLYPGGAFDPL----------GLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253          
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.088e-19
Identity = 65/174 (37.36%), Postives = 92/174 (52.87%), Query Frame = 2
Query:    2 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 496
            VI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct:  102 VIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG----GPLGE---VVDPLYPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 256          
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.421e-19
Identity = 65/174 (37.36%), Postives = 90/174 (51.72%), Query Frame = 2
Query:    2 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 496
            VI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y   P          ++  ++ LMG  E  R       G +G    +    Y GG+ DP               D  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  112 VIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAG----GPLGE---VTDPIYPGGNFDPL----------GLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 266          
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.421e-19
Identity = 65/174 (37.36%), Postives = 92/174 (52.87%), Query Frame = 2
Query:    2 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 496
            VI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP              +D ++  + K+K +KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  101 VIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGE---VVDPLYPGGSFDPL----------GLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255          
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.856e-19
Identity = 66/174 (37.93%), Postives = 92/174 (52.87%), Query Frame = 2
Query:    2 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 496
            VI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R         +G    +    Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ LVTG GP +NL DHLADPVNNN
Sbjct:  100 VIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----EPLGE---VVDPLYPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNN 254          
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.856e-19
Identity = 65/174 (37.36%), Postives = 91/174 (52.30%), Query Frame = 2
Query:    2 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 496
            VI+  +AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:   40 VIHSTWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG----GPLGE---VTDPIYPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 194          
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.424e-19
Identity = 65/174 (37.36%), Postives = 90/174 (51.72%), Query Frame = 2
Query:    2 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 496
            VI+ R+AMLGA+G + PE+  + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G         Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  100 VIHCRWAMLGALGCVFPELFARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGEVID---PLYPGGSFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254          
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.165e-19
Identity = 65/174 (37.36%), Postives = 91/174 (52.30%), Query Frame = 2
Query:    2 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 496
            VI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA PVNNN
Sbjct:   97 VIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG----GPLGE---VTDPIYPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNN 251          
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.165e-19
Identity = 65/174 (37.36%), Postives = 92/174 (52.87%), Query Frame = 2
Query:    2 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 496
            VI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+K GRLAML++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct:   99 VIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLGE---VVDPLYPGGSFDPL----------GLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNN 253          
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.399e-19
Identity = 65/174 (37.36%), Postives = 92/174 (52.87%), Query Frame = 2
Query:    2 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 496
            VI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R         +G    +    Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  101 VIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----EPLGE---VVDPLYPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255          
The following BLAST results are available for this feature:
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
CB215_PEA8.330e-2038.86Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB28_PEA1.088e-1937.36Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB2A_PINSY1.421e-1937.36Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB25_TOBAC1.421e-1937.36Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB25_NICPL1.856e-1937.93Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB22_CUCSA1.856e-1937.36Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB24_PETSP2.424e-1937.36Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_SOYBN3.165e-1937.36Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB22_MAIZE3.165e-1937.36Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_NICPL5.399e-1937.36Chlorophyll a-b binding protein C, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00353 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00353 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623262 ID=BQ623262; Name=BQ623262; organism=Citrus sinensis; type=EST; length=639bp
GGTCATCAACGGTCGTTATGCCATGTTGGGAGCTGTGGGAGCCATTGCAC
CGGAGATTCTTGGCAAGGCAGGCCTCATTCCGCAAGAAACTGCCCTGGCC
TGGTTCCAAACCGGTGTGATCCCCCCAGCGGGAACATACAACTACTGGGC
AGACCCTTACACACTTTTCGTCCTGGAAATGGCACTCATGGGATTTGCCG
AGCACCGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGGGCAGGCAA
TACTTCCTCGGATTCGAGAAATACTTGGGAGGATCCGGCGATCCGGCTTA
CCCTGGAGGACCTCTATTCAACCCTCTGGGTCTTGGGAAAGATGAGAAGT
CAATGAAGGATTTCAAGCTCAAGGAAGTGAAGAATGGAAGATTGGCAATG
TTGGCAATCTTGGGTTACTTTGTTCAAGGTCTTGTTACAGGAGTTGGGCC
TTACCAGAACCTATTGGATCACTTGGCTGATCCTGTAAACAACAATGTTT
TGACTAGCCTCAAGTTTCACTGAGAGAGAAATTTCTTGGTCATTGCTTGG
AATTATATATTCCAAGCCTTGGCATCCCCCACTCTGTTCTATTCTACTTT
CCCCATTGGAAAATTATCTATGTGAGAAGTGAATGTAAC
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