BQ623262

Overview
NameBQ623262
Unique NameBQ623262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9230 contig Csv1_Contig9230:409..1047. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.399e-19
Identity = 64/174 (36.78%), Postives = 92/174 (52.87%), Query Frame = 2
Query:    2 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 496
            VI+ R+AMLGA+G + PE+L + G+   E +  WF+ G  I   G  +Y  +           ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA+PVNNN
Sbjct:   79 VIHSRWAMLGALGCVFPELLARNGVKFGEAS--WFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAG----GPLGE---VTDPIYPGGSFDPL----------ALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNN 233          
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.052e-19
Identity = 65/174 (37.36%), Postives = 90/174 (51.72%), Query Frame = 2
Query:    2 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 496
            VI+ R+AMLGA+G + PE+L K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP  NN
Sbjct:   99 VIHSRWAMLGALGCVTPELLAKNGVKFGEAV--WFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG----GPLGE---VEDPIYPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNN 253          
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.571e-18
Identity = 63/174 (36.21%), Postives = 92/174 (52.87%), Query Frame = 2
Query:    2 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 496
            VI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP              +  ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP ++L DH+ADPVNNN
Sbjct:  100 VIHCRWAMLGALGCVFPELLARNGVKFGEAG--WFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAG----GPLGE---IVDPLYPGGSFDPL----------GLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNN 254          
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.571e-18
Identity = 64/174 (36.78%), Postives = 91/174 (52.30%), Query Frame = 2
Query:    2 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 496
            VI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP              +  ++  + K+KE+KNGRLAM ++ G+FV  +VTG GP +NL DHLADPVNNN
Sbjct:   62 VIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG----GPLGE---VVDPLYPGGSFDPL----------GLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNN 216          
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.052e-18
Identity = 69/179 (38.55%), Postives = 91/179 (50.84%), Query Frame = 2
Query:    2 VINGRYAMLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 508
            +I+ R+A+LGA+G + PE+L + AG+  Q     WF+ G  I   G  NY  +   +          +++ LMG AE  R    AN GS G    L    Y GG  DP               D  +  + K+KE+KNGRLAM + LG+FVQ +VTG GP QNL DHLADP  N    S
Sbjct:   84 LIHARWALLGALGILTPELLSQYAGV--QFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR----ANGGSEGFLDDLD-TLYPGGPFDPL----------GLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFAS 245          
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.052e-18
Identity = 63/174 (36.21%), Postives = 89/174 (51.15%), Query Frame = 2
Query:    2 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 496
            VI+ R+ MLGA+G + PE+  + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G         Y GGS DP               D ++  + ++KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  100 VIHCRWTMLGALGCVFPELFARNGVKFGEAV--WFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGEVID---PLYPGGSFDPL----------GLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254          
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.680e-18
Identity = 62/170 (36.47%), Postives = 87/170 (51.18%), Query Frame = 2
Query:    2 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 511
            V+NGR+AMLG  G + PE+L KAGL+    A  W +       G   Y+A   T   + M+   + E RR+QD  NPGS+ +     F+ Y     +  Y             + K       KE+ NGRLAMLA LG+ VQ  V G GP++NL  HLADP +N ++ ++
Sbjct:   76 VVNGRWAMLGVAGMLIPEVLTKAGLM---NAPEWLRL-----PGKETYFASSSTALRVHMSST-YVEIRRWQDIKNPGSVNQDPI--FKSYSLPPHECGYPGRVFNPLNFAPLENKE------KELANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWHNTIIQTI 228          
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.797e-18
Identity = 63/175 (36.00%), Postives = 85/175 (48.57%), Query Frame = 2
Query:    2 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 496
            +I+ R  +LGA+G + PE+L     I    A  WF+ G  I   G  NY  +P  +          +++ LMG  E  R     N G  G     G +  Y G + DP               D  +  + K+KE+KNGRLAM A LG+FVQ +VTG GP +NL DHLA+P  NN
Sbjct:  106 LIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR----VNGGPAGE----GLDPLYPGEAFDPL----------GLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENN 262          
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.797e-18
Identity = 62/174 (35.63%), Postives = 89/174 (51.15%), Query Frame = 2
Query:    2 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 496
            VI+ R+AMLGA+G + PE+  + G+   E    W + G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP              +D ++  + K+KE KNGRLAM ++ G+F+Q +VTG GP +NL DHL DPVNNN
Sbjct:  101 VIHCRWAMLGALGCVFPELFARNGVKFGEAV--WLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAG----GPLG---VVVDPLYPGGSFDPL----------GLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNN 255          
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.018e-17
Identity = 62/174 (35.63%), Postives = 86/174 (49.43%), Query Frame = 2
Query:    2 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 496
            VI+GR+AMLGA+G I PE+L K   +  +  + WF+ G  I   G  +Y  +P  +           ++ LMG  E  R      PG               G G+  Y             D  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct:   97 VIHGRWAMLGALGCIFPEVLEKWVKVDFKEPV-WFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253          
The following BLAST results are available for this feature:
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
CB21_SOYBN5.399e-1936.78Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB23_POLMU7.052e-1937.36Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_WHEAT1.571e-1836.21Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PEA1.571e-1836.78Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB2_DUNTE2.052e-1838.55Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_PETSP2.052e-1836.21Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB120_HORVU2.680e-1836.47Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB2_DUNSA7.797e-1836.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PETSP7.797e-1835.63Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB23_SOLLC1.018e-1735.63Chlorophyll a-b binding protein 13, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00353 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00353 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623262 ID=BQ623262; Name=BQ623262; organism=Citrus sinensis; type=EST; length=639bp
GGTCATCAACGGTCGTTATGCCATGTTGGGAGCTGTGGGAGCCATTGCAC
CGGAGATTCTTGGCAAGGCAGGCCTCATTCCGCAAGAAACTGCCCTGGCC
TGGTTCCAAACCGGTGTGATCCCCCCAGCGGGAACATACAACTACTGGGC
AGACCCTTACACACTTTTCGTCCTGGAAATGGCACTCATGGGATTTGCCG
AGCACCGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGGGCAGGCAA
TACTTCCTCGGATTCGAGAAATACTTGGGAGGATCCGGCGATCCGGCTTA
CCCTGGAGGACCTCTATTCAACCCTCTGGGTCTTGGGAAAGATGAGAAGT
CAATGAAGGATTTCAAGCTCAAGGAAGTGAAGAATGGAAGATTGGCAATG
TTGGCAATCTTGGGTTACTTTGTTCAAGGTCTTGTTACAGGAGTTGGGCC
TTACCAGAACCTATTGGATCACTTGGCTGATCCTGTAAACAACAATGTTT
TGACTAGCCTCAAGTTTCACTGAGAGAGAAATTTCTTGGTCATTGCTTGG
AATTATATATTCCAAGCCTTGGCATCCCCCACTCTGTTCTATTCTACTTT
CCCCATTGGAAAATTATCTATGTGAGAAGTGAATGTAAC
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