BQ623270

Overview
NameBQ623270
Unique NameBQ623270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13374 contig Csv1_Contig13374:834..1499. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS5B_DROME (40S ribosomal protein S5b OS=Drosophila melanogaster GN=RpS5b PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 5.372e-74
Identity = 106/149 (71.14%), Postives = 129/149 (86.58%), Query Frame = 1
Query:  106 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            ++KLF RW  +D+ ++DISL DYI V+  K A Y+PH+AGRY+ KRFRKAQCPIVERLT+ LMM GR+NGKKL+A RIVKHA EIIHLLT +NP+QV V+A++NSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ TGARE+AF
Sbjct:   42 EIKLFGRWACDDISISDISLQDYIAVKE-KFARYLPHSAGRYAAKRFRKAQCPIVERLTSGLMMKGRSNGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLICTGAREAAF 189          

HSP 2 Score: 77.0258 bits (188), Expect = 5.372e-74
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            FRNIKT+AECLADELINAAKGSSNSYAIKKKDE+ERVAK
Sbjct:  189 FRNIKTVAECLADELINAAKGSSNSYAIKKKDELERVAK 227          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS5_CAEEL (40S ribosomal protein S5 OS=Caenorhabditis elegans GN=rps-5 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 9.148e-74
Identity = 110/155 (70.97%), Postives = 131/155 (84.52%), Query Frame = 1
Query:   88 PSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            P+    +V LF +W+ + V V+DISL DYI V+  K A Y+PH+AGR+ V+RFRKA CPIVERL NSLMMHGRNNGKKLM VRIVKHA EII+LLT +NP+QV+V+AVINSGPRED+TRIG AG VRRQAVD++PLRRVNQAI+LL TGARE+AF
Sbjct:   16 PATEAPEVALFGKWSLQSVNVSDISLVDYIPVKE-KSAKYLPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREAAF 169          

HSP 2 Score: 77.0258 bits (188), Expect = 9.148e-74
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            FRN+KTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK
Sbjct:  169 FRNVKTIAECLADELINAAKGSSNSYAIKKKDELERVAK 207          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS5_NICPL (40S ribosomal protein S5 (Fragment) OS=Nicotiana plumbaginifolia GN=RPS5 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.784e-72
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = 1
Query:  214 HTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            HTAGRY  KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTD NPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRV+QAIYLLTTGARESAF
Sbjct:    1 HTAGRYQAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVSQAIYLLTTGARESAF 113          

HSP 2 Score: 78.1814 bits (191), Expect = 3.784e-72
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK
Sbjct:  113 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 151          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS5_YEAST (40S ribosomal protein S5 OS=Saccharomyces cerevisiae GN=RPS5 PE=1 SV=3)

HSP 1 Score: 219.935 bits (559), Expect = 4.109e-71
Identity = 105/157 (66.88%), Postives = 130/157 (82.80%), Query Frame = 1
Query:   82 QDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            ++  Q   ++KLFN+W+FE+V+V D SL DY+ V   +   +V HTAGRY+ KRFRKAQCPI+ERLTNSLMM+GRNNGKKL AVRI+KH ++II++LTDQNPIQV+VDA+ N+GPRED TR+G  G  RRQAVD+SPLRRVNQAI LLT GARE+AF
Sbjct:   31 EEVQQAQTEIKLFNKWSFEEVEVKDASLVDYVQV---RQPIFVAHTAGRYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAF 184          

HSP 2 Score: 69.707 bits (169), Expect = 4.109e-71
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            FRNIKTIAE LA+ELINAAKGSS SYAIKKKDE+ERVAK
Sbjct:  184 FRNIKTIAETLAEELINAAKGSSTSYAIKKKDELERVAK 222          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS5B_SCHPO (40S ribosomal protein S5-B OS=Schizosaccharomyces pombe GN=rps5b PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.096e-68
Identity = 106/148 (71.62%), Postives = 124/148 (83.78%), Query Frame = 1
Query:  109 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            +KLFN++ FE V+V DISL DYI +   +    +PHTAGR+  KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHA EII LLTDQNP+QV+VDAV   GPRED+TRIGSAG VRRQAVD+SPLRRVNQA+ L+T GARE+AF
Sbjct:   18 IKLFNKFPFEGVEVKDISLVDYITIGNGQP---LPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAF 162          

HSP 2 Score: 72.0182 bits (175), Expect = 4.096e-68
Identity = 33/39 (84.62%), Postives = 39/39 (100.00%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            FRN+K+I+ECLA+E+INAAKGSSNSYAIKKKDE+ERVAK
Sbjct:  162 FRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAK 200          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS5A_SCHPO (40S ribosomal protein S5-A OS=Schizosaccharomyces pombe GN=rps5a PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.096e-68
Identity = 106/148 (71.62%), Postives = 124/148 (83.78%), Query Frame = 1
Query:  109 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            +KLFN++ FE V+V DISL DYI +   +    +PHTAGR+  KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHA EII LLTDQNP+QV+VDAV   GPRED+TRIGSAG VRRQAVD+SPLRRVNQA+ L+T GARE+AF
Sbjct:   18 IKLFNKFPFEGVEVKDISLVDYITIGNGQP---LPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAF 162          

HSP 2 Score: 72.0182 bits (175), Expect = 4.096e-68
Identity = 33/39 (84.62%), Postives = 39/39 (100.00%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            FRN+K+I+ECLA+E+INAAKGSSNSYAIKKKDE+ERVAK
Sbjct:  162 FRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAK 200          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS5_DICDI (40S ribosomal protein S5 OS=Dictyostelium discoideum GN=rps5 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 2.004e-64
Identity = 99/149 (66.44%), Postives = 121/149 (81.21%), Query Frame = 1
Query:  106 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            +V LF +W++  V   DISL DYI V   K   + PH+AGRY+  RFRKAQCPIVERL NS+MM GRN GKK+MAVRI++ A EII+LLTD+NP+QV+V+AV+NSGPRED+TRIGSAG VRRQAVD+SP+RRVN A+YLLT G R +AF
Sbjct:    4 EVALFGKWSYSGVTCPDISLQDYICV---KKNVFTPHSAGRYNKVRFRKAQCPIVERLANSMMMFGRNAGKKVMAVRIIEQAFEIIYLLTDKNPLQVLVEAVMNSGPREDSTRIGSAGTVRRQAVDVSPMRRVNHAVYLLTQGTRAAAF 149          

HSP 2 Score: 66.2402 bits (160), Expect = 2.004e-64
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            FRNI+T+AECLADELINA+KGS NSY+IK+KD +ER AK
Sbjct:  149 FRNIRTVAECLADELINASKGSPNSYSIKQKDALERTAK 187          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS5_ENTHI (40S ribosomal protein S5 (Fragment) OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.292e-44
Identity = 68/106 (64.15%), Postives = 88/106 (83.02%), Query Frame = 1
Query:  235 VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            +K FRK QCPIVERL   +M HG+N+GKKL+A+R+V+ + EIIHLLT++NPIQV+VDA+IN+ PRED+TR+G+ G VR QAVD+SPLRR+N A+YLL  G R  AF
Sbjct:    2 IKPFRKIQCPIVERLVCCMMQHGKNSGKKLLAMRVVEESFEIIHLLTEKNPIQVLVDAIINASPREDSTRVGTGGNVRGQAVDVSPLRRINHALYLLIMGCRCGAF 107          

HSP 2 Score: 53.9138 bits (128), Expect = 1.292e-44
Identity = 23/38 (60.53%), Postives = 33/38 (86.84%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVA 664
            FRN K++AECLADE++NA+K  + S+AI KK+++ERVA
Sbjct:  107 FRNSKSLAECLADEIVNASKSYTGSFAIMKKEDLERVA 144          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_AERPE (30S ribosomal protein S7P OS=Aeropyrum pernix GN=rps7p PE=3 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.506e-42
Identity = 72/149 (48.32%), Postives = 101/149 (67.79%), Query Frame = 1
Query:  109 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFS 555
            ++LF +W++  V+V D SL  YI ++      ++PHT GR+  +RF KA+ PIVERL N LM  GRN GKK +A  IVK A +II+  T +NPIQV+V A+ NS PRED T+I   G+  R +VD++P RRV+QA+  +  GAR+ AF+
Sbjct:   21 IRLFGKWSWVGVEVRDPSLKRYINLKPV----WLPHTGGRHEKRRFGKAEVPIVERLMNKLMRPGRNGGKKHLAYNIVKTAFDIIYFETGENPIQVLVKAIENSAPREDTTKITYGGITYRVSVDVAPQRRVDQALKFIADGARQCAFN 165          

HSP 2 Score: 50.8322 bits (120), Expect = 1.506e-42
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVA 664
            F N K I ECLA+ELI AA+G   SYAI++K+EIER+A
Sbjct:  164 FNNPKPIEECLAEELILAARGDPRSYAIRQKEEIERIA 201          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS5_ENCCU (40S ribosomal protein S5 OS=Encephalitozoon cuniculi GN=RPS5 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.608e-41
Identity = 70/149 (46.98%), Postives = 102/149 (68.46%), Query Frame = 1
Query:  106 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            ++ LF ++++E+V+VN++SL  YI +        VPH A   +     KA+ PI ER   SLM HGRN+GKK +A+ I + A  IIH +T +NP+QV+VDA++NSGPRED  RIG AG +RR +VD+SPL+R++ AI  L+ G R ++F
Sbjct:   22 EINLFEKYSYEEVKVNNVSLRPYINLS---RRGIVPHAATTITKGTTGKARIPIAERFVCSLMRHGRNSGKKRLAINIFEDACFIIHSMTKKNPLQVLVDAIVNSGPREDTARIGRAGSMRRTSVDVSPLKRISIAISNLSAGIRNASF 167          

HSP 2 Score: 49.2914 bits (116), Expect = 3.608e-41
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 2
Query:  542 NLLFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            N  FRN  T+AE +A+ELI A+  S NSYA+ KK EIER+A+
Sbjct:  164 NASFRNRITLAEAIANELIAASTNSQNSYAVNKKKEIERIAQ 205          
The following BLAST results are available for this feature:
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS5B_DROME5.372e-7471.1440S ribosomal protein S5b OS=Drosophila melanogast... [more]
RS5_CAEEL9.148e-7470.9740S ribosomal protein S5 OS=Caenorhabditis elegans... [more]
RS5_NICPL3.784e-7296.4640S ribosomal protein S5 (Fragment) OS=Nicotiana p... [more]
RS5_YEAST4.109e-7166.8840S ribosomal protein S5 OS=Saccharomyces cerevisi... [more]
RS5B_SCHPO4.096e-6871.6240S ribosomal protein S5-B OS=Schizosaccharomyces ... [more]
RS5A_SCHPO4.096e-6871.6240S ribosomal protein S5-A OS=Schizosaccharomyces ... [more]
RS5_DICDI2.004e-6466.4440S ribosomal protein S5 OS=Dictyostelium discoide... [more]
RS5_ENTHI1.292e-4464.1540S ribosomal protein S5 (Fragment) OS=Entamoeba h... [more]
RS7_AERPE1.506e-4248.3230S ribosomal protein S7P OS=Aeropyrum pernix GN=r... [more]
RS5_ENCCU3.608e-4146.9840S ribosomal protein S5 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00361 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00361 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623270 ID=BQ623270; Name=BQ623270; organism=Citrus sinensis; type=EST; length=667bp
CTTATTATTTTATCTCTCTCGCTCTCTCACTCTCTCAAAGCTCTTCAGGT
AAGAATGGCGACTGCTGTAGTGGCACAATCTCAAGACCCATCACAGCCTC
ACTACGATGTGAAGCTCTTCAATAGGTGGACTTTCGAGGATGTTCAGGTC
AATGACATCTCGTTGAGTGATTATATTGGCGTGCAAGCGGCCAAGCACGC
TACTTATGTGCCTCACACTGCTGGGAGGTACTCAGTTAAGCGTTTCCGGA
AGGCCCAATGTCCCATTGTTGAGAGGCTTACGAACTCTCTTATGATGCAC
GGTCGTAACAACGGCAAGAAATTGATGGCTGTCAGGATTGTTAAGCATGC
CATGGAGATCATTCACCTTTTGACCGACCAGAACCCAATTCAAGTCATTG
TTGATGCTGTCATCAACAGTGGTCCAAGGGAAGATGCTACCCGTATTGGA
TCTGCTGGTGTTGTTAGGCGTCAGGCTGTGGATATTTCCCCATTGCGCCG
TGTGAATCAAGCGATCTATCTACTCACCACTGGTGCTCGTGAATCTGCTT
TTTCGTAACATCAAGACTATTGCCGAATGCTTGGCCGATGAACTCATTAA
TGCTGCCAAGGGGTCATCTAACAGCTATGCGATCAAGAAGAAGGATGAGA
TTGAGAGAGTGGCAAAG
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