BQ623270

Overview
NameBQ623270
Unique NameBQ623270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13374 contig Csv1_Contig13374:834..1499. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_PYRIL (30S ribosomal protein S7P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps7p PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.622e-40
Identity = 74/149 (49.66%), Postives = 96/149 (64.43%), Query Frame = 1
Query:  109 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFS 555
            V LF +W+FE+V V D  L  YI ++       +PHT GRY   RF KA+ PIVERL N +M  GRN GKK  A  IVK A +II+  T QNPIQV+VDA+IN  PRE+ TRI   G+    +VD+SP RR++ A+  +T GAR  +F+
Sbjct:   40 VLLFGKWSFENVVVKDPGLRRYICLKPV----LLPHTEGRYQKHRFGKARIPIVERLINLMMRPGRNTGKKHKAYNIVKRAFDIIYYKTGQNPIQVLVDAIINVAPREEVTRIIMGGIAYTVSVDVSPQRRLDLALRWITEGARTCSFN 184          

HSP 2 Score: 48.1358 bits (113), Expect = 6.622e-40
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVA 664
            F N K I ECLADE+I AA     SYA++K++E+ER+A
Sbjct:  183 FNNPKPIEECLADEIIAAASNDPRSYAVRKREELERIA 220          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_SULTO (30S ribosomal protein S7P OS=Sulfolobus tokodaii GN=rps7p PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.641e-40
Identity = 75/150 (50.00%), Postives = 103/150 (68.67%), Query Frame = 1
Query:  106 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFS 555
            D+K+F +W  + V++ D SL  YIG+       Y+PHT GR+  +RF KA+ PIVERL N++M  GRN GKK++A  IVK A +II L T QNPIQV+V A+ NS PRE+ TRI   G+V   AVD++P RRV+ A+  L  GA+E++F+
Sbjct:   10 DLKVFGKWDTK-VEIRDPSLKKYIGLMPV----YLPHTGGRHEHRRFGKAKLPIVERLINNVMRPGRNKGKKMLAYNIVKTAFDIIALKTGQNPIQVLVKAIENSAPREEVTRIMYGGIVYYVAVDVAPQRRVDLALRHLVMGAKEASFN 154          

HSP 2 Score: 43.8986 bits (102), Expect = 6.641e-40
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVA 664
            F N K I E LA+E+I AA     S+AI+KK+EIER+A
Sbjct:  153 FNNPKPIEEALAEEIIAAASNDPKSFAIRKKEEIERIA 190          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_SULSO (30S ribosomal protein S7P OS=Sulfolobus solfataricus GN=rps7p PE=3 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 6.641e-40
Identity = 73/150 (48.67%), Postives = 102/150 (68.00%), Query Frame = 1
Query:  106 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFS 555
            D+K+F +W  + V++ D SL  YI +       Y+PHT GR+  +RF KA+ PIVERL N +M  GRN GKK +A  IVK A +II+L T QNPIQV+V A+ NS PRE+ TRI   G+V   AVD+SP RR++ A+  + TGA++++F+
Sbjct:    9 DIKVFGKWDTK-VEIRDPSLKKYISLMPV----YLPHTGGRHEHRRFGKAKVPIVERLINQIMRPGRNKGKKHLAYNIVKLAFDIIYLKTGQNPIQVLVRAIENSAPREEVTRIMYGGIVYYVAVDVSPQRRIDLALRHIATGAKDASFN 153          

HSP 2 Score: 45.4394 bits (106), Expect = 6.641e-40
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVA 664
            F N K I E LA+E+I AA   S S+AIK+K+EIER+A
Sbjct:  152 FNNPKPIEEVLAEEIIAAANNDSKSFAIKRKEEIERIA 189          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_DESMO (30S ribosomal protein S7P OS=Desulfurococcus mobilis GN=rps7p PE=3 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 2.493e-39
Identity = 72/149 (48.32%), Postives = 101/149 (67.79%), Query Frame = 1
Query:  106 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            ++KLFN+W+++ ++V D SL  YI ++      Y+PHT GR+  +RF K   PIVERL N +M  GRN GKK +A  IVK A +IIH+ T +NPIQV+V A+ N+ PRE+ TRI   G+    +VD++PLRR++ A+  LT GAR  AF
Sbjct:   13 EIKLFNKWSYDFIEVRDPSLKKYICLKPV----YLPHTGGRHEHRRFGKTHVPIVERLINKVMRPGRNMGKKHLAYHIVKKAFDIIHIKTGENPIQVLVRAIENAAPREETTRIMYGGITYHVSVDVAPLRRIDLALRHLTEGARMKAF 157          

HSP 2 Score: 39.2762 bits (90), Expect = 2.493e-39
Identity = 18/32 (56.25%), Postives = 24/32 (75.00%), Query Frame = 2
Query:  569 IAECLADELINAAKGSSNSYAIKKKDEIERVA 664
            I E LA+E++ AA     SYAI+KK+EIER+A
Sbjct:  163 IEEALAEEIVLAASNDPKSYAIQKKEEIERIA 194          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_METKA (30S ribosomal protein S7P OS=Methanopyrus kandleri GN=rps7p PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 5.513e-39
Identity = 71/150 (47.33%), Postives = 100/150 (66.67%), Query Frame = 1
Query:  103 YDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            Y++K+F +W   +V+V D  L DYI ++      Y+PHT GR++ KRF KA+ PIVERL N +M   +N GKK +A  IVK A +IIH  T +NPIQV+V A+ N+ PRE+ T I   G+   +AVD SP RR++ A+ L+T GA++ AF
Sbjct:   11 YEMKVFGKWDPTEVEVRDPGLKDYICLKPM----YLPHTGGRHAKKRFAKAEVPIVERLINRVMRTEKNTGKKHLAYNIVKRAFDIIHERTGENPIQVLVQALENAAPREETTTIIYGGISYHEAVDSSPQRRLDIALRLITEGAQQRAF 156          

HSP 2 Score: 45.4394 bits (106), Expect = 5.513e-39
Identity = 20/39 (51.28%), Postives = 31/39 (79.49%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            FRN K I ECLA+E+I AA+  +  ++I++K+EIER+A+
Sbjct:  156 FRNPKPIEECLAEEIIAAARYDTECHSIRRKEEIERIAE 194          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_THENV (30S ribosomal protein S7P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps7p PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.164e-39
Identity = 70/147 (47.62%), Postives = 95/147 (64.63%), Query Frame = 1
Query:  115 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFS 555
            LF +W+FE+V V D  L  YI ++       +PHT GRY   RF KA+ PIVERL N +M  GRN GKK  A  IVK A +I++  T QNPIQV +DA++N+ PRE+ TRI   G+    +VD+SP RR++ A+  +T GAR  +F+
Sbjct:   42 LFGKWSFENVVVRDPGLRRYICLKPV----VLPHTEGRYQNYRFGKARIPIVERLINLMMRPGRNAGKKHKAYNIVKRAFDIVYYKTGQNPIQVFIDAIVNTAPREEITRIIMGGIAYSVSVDVSPQRRLDLALRWITEGARACSFN 184          

HSP 2 Score: 48.1358 bits (113), Expect = 7.164e-39
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVA 664
            F N K I ECLADEL+ AA     SYA++K++E+ER+A
Sbjct:  183 FNNPKPIEECLADELVAAAANDPKSYAVRKREELERIA 220          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_DESK1 (30S ribosomal protein S7P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps7p PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 7.183e-39
Identity = 72/149 (48.32%), Postives = 103/149 (69.13%), Query Frame = 1
Query:  106 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            ++KLFN+W+++ ++V D SL  YI ++      Y+PH+ GR+  KRF KA  PIVERL N++M  GRN GKK +A  IVK + E+I+L T +NP+QV+V A+ N+ PRE+ TRI   G+    +VDI+PLRR++ A+  LT GAR  AF
Sbjct:   13 EIKLFNKWSYDFIEVRDPSLKKYICLKPV----YLPHSGGRHEHKRFGKALVPIVERLINNVMRPGRNMGKKHLAYNIVKKSFELIYLKTGENPLQVLVRAIENAAPREETTRIMYGGITYHVSVDIAPLRRIDLALRHLTEGARLKAF 157          

HSP 2 Score: 40.0466 bits (92), Expect = 7.183e-39
Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVA 664
            F N  +I E LA+E+  AA     SYA++KK+EIER+A
Sbjct:  157 FHNPISIEEALAEEIALAASNDPKSYAVQKKEEIERIA 194          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_PYRAE (30S ribosomal protein S7P OS=Pyrobaculum aerophilum GN=rps7p PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.334e-39
Identity = 69/149 (46.31%), Postives = 96/149 (64.43%), Query Frame = 1
Query:  109 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFS 555
            + LF +W++EDV V D  L  YI ++       +PHT GRY   RF KA+ PIVERL N +M  GRN GKK  A  IVK A ++I+  T +NP+QV +DA+IN+ PRE+ TRI   G+    +VD+SP RR++ A+  +T GAR  +F+
Sbjct:   39 ILLFGKWSYEDVVVRDPGLRRYICLKPV----ILPHTEGRYQNTRFGKARIPIVERLINLMMRPGRNTGKKHKAYNIVKRAFDLIYYKTGKNPLQVFIDAIINTAPREEITRIIMGGIAYSVSVDVSPQRRLDLALRWITEGARACSFN 183          

HSP 2 Score: 47.7506 bits (112), Expect = 9.334e-39
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVA 664
            F N K I ECLADE+I AA     SYA++K++E+ER+A
Sbjct:  182 FNNPKPIEECLADEIIAAAANDPKSYAVRKREELERIA 219          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_METJA (30S ribosomal protein S7P OS=Methanocaldococcus jannaschii GN=rps7p PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.590e-38
Identity = 74/148 (50.00%), Postives = 100/148 (67.57%), Query Frame = 1
Query:  106 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESA 549
            ++K+F RW+ +DV V D  L +YI +       YVPHTAGRY+ ++F KA+  IVERL N +M    N GKKL A++IV++A EII   T QNPIQV+VDA+ N+GPRED TRI   G+V  Q+VD S LRR++ A+  +  GA  +A
Sbjct:    5 EIKVFGRWSTKDVVVKDPGLRNYINLTPI----YVPHTAGRYTKRQFEKAKMNIVERLVNKVMRREENTGKKLKALKIVENAFEIIEKRTKQNPIQVLVDAIENAGPREDTTRISYGGIVYLQSVDCSSLRRIDVALRNIALGAYMAA 148          

HSP 2 Score: 39.2762 bits (90), Expect = 1.590e-38
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 2
Query:  563 KTIAECLADELINAAKGS-SNSYAIKKKDEIERVAK 667
            K I E LA+E+I AA+G    SYA++KK+E ERVA+
Sbjct:  153 KPIEEALAEEIIAAARGDMQKSYAVRKKEETERVAQ 188          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_SULAC (30S ribosomal protein S7P OS=Sulfolobus acidocaldarius GN=rps7p PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 5.964e-38
Identity = 73/150 (48.67%), Postives = 102/150 (68.00%), Query Frame = 1
Query:  106 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFS 555
            +VK+F +W  + V+V D SL  YI + +     Y+PHT GR+  +RF K++ PIVERL N+LM  GRN GKK++A  IVK   +II + T QNPIQV+V A+ N+ PRE+ TRI   G+V   AVD++P RRV+ A+  L TGA E++F+
Sbjct:   11 NVKVFGKWDTK-VEVRDPSLKKYIDLMSI----YLPHTGGRHEHRRFGKSRIPIVERLINNLMRPGRNKGKKMLAYNIVKTTFDIIAVKTGQNPIQVLVRAIENAAPREEVTRIMYGGIVYYVAVDVAPQRRVDLALRHLVTGASEASFN 155          

HSP 2 Score: 43.1282 bits (100), Expect = 5.964e-38
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVA 664
            F N K I E LA+E+I AA   + S AI+KK+EIER+A
Sbjct:  154 FNNPKPIEEALAEEIIAAANNDNKSVAIRKKEEIERIA 191          
The following BLAST results are available for this feature:
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_PYRIL6.622e-4049.6630S ribosomal protein S7P OS=Pyrobaculum islandicu... [more]
RS7_SULTO6.641e-4050.0030S ribosomal protein S7P OS=Sulfolobus tokodaii G... [more]
RS7_SULSO6.641e-4048.6730S ribosomal protein S7P OS=Sulfolobus solfataric... [more]
RS7_DESMO2.493e-3948.3230S ribosomal protein S7P OS=Desulfurococcus mobil... [more]
RS7_METKA5.513e-3947.3330S ribosomal protein S7P OS=Methanopyrus kandleri... [more]
RS7_THENV7.164e-3947.6230S ribosomal protein S7P OS=Thermoproteus neutrop... [more]
RS7_DESK17.183e-3948.3230S ribosomal protein S7P OS=Desulfurococcus kamch... [more]
RS7_PYRAE9.334e-3946.3130S ribosomal protein S7P OS=Pyrobaculum aerophilu... [more]
RS7_METJA1.590e-3850.0030S ribosomal protein S7P OS=Methanocaldococcus ja... [more]
RS7_SULAC5.964e-3848.6730S ribosomal protein S7P OS=Sulfolobus acidocalda... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00361 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00361 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623270 ID=BQ623270; Name=BQ623270; organism=Citrus sinensis; type=EST; length=667bp
CTTATTATTTTATCTCTCTCGCTCTCTCACTCTCTCAAAGCTCTTCAGGT
AAGAATGGCGACTGCTGTAGTGGCACAATCTCAAGACCCATCACAGCCTC
ACTACGATGTGAAGCTCTTCAATAGGTGGACTTTCGAGGATGTTCAGGTC
AATGACATCTCGTTGAGTGATTATATTGGCGTGCAAGCGGCCAAGCACGC
TACTTATGTGCCTCACACTGCTGGGAGGTACTCAGTTAAGCGTTTCCGGA
AGGCCCAATGTCCCATTGTTGAGAGGCTTACGAACTCTCTTATGATGCAC
GGTCGTAACAACGGCAAGAAATTGATGGCTGTCAGGATTGTTAAGCATGC
CATGGAGATCATTCACCTTTTGACCGACCAGAACCCAATTCAAGTCATTG
TTGATGCTGTCATCAACAGTGGTCCAAGGGAAGATGCTACCCGTATTGGA
TCTGCTGGTGTTGTTAGGCGTCAGGCTGTGGATATTTCCCCATTGCGCCG
TGTGAATCAAGCGATCTATCTACTCACCACTGGTGCTCGTGAATCTGCTT
TTTCGTAACATCAAGACTATTGCCGAATGCTTGGCCGATGAACTCATTAA
TGCTGCCAAGGGGTCATCTAACAGCTATGCGATCAAGAAGAAGGATGAGA
TTGAGAGAGTGGCAAAG
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