BQ623270

Overview
NameBQ623270
Unique NameBQ623270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13374 contig Csv1_Contig13374:834..1499. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_METMP (30S ribosomal protein S7P OS=Methanococcus maripaludis GN=rps7p PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.801e-37
Identity = 72/148 (48.65%), Postives = 92/148 (62.16%), Query Frame = 1
Query:  106 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESA 549
            ++KLF +W  E V V D SL  YI V        VPHTAGR S K F K++  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA ESA
Sbjct:    2 EIKLFGKWDSETVAVKDPSLKSYISVAPV----LVPHTAGRNSKKSFDKSKMNIVERLANKLMANQNNTGKKHETLAIVEEALTIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASESA 145          

HSP 2 Score: 45.8246 bits (107), Expect = 3.801e-37
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 2
Query:  554 RNIKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAK 667
            +N KT+A+CLADELI A+K     S+A+KKK+E ERVA+
Sbjct:  147 KNKKTVAQCLADELIFASKADMQKSFAVKKKEEKERVAQ 185          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_METM5 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps7p PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.153e-36
Identity = 71/148 (47.97%), Postives = 92/148 (62.16%), Query Frame = 1
Query:  106 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESA 549
            ++KLF +W  E V V D SL  YI V        VPHTAGR + K F KA+  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA +SA
Sbjct:    2 EIKLFGKWDSETVTVKDPSLKSYISVAPV----LVPHTAGRNTKKSFDKAKMNIVERLANKLMANQNNTGKKHETLAIVEEALAIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASDSA 145          

HSP 2 Score: 43.8986 bits (102), Expect = 3.153e-36
Identity = 21/39 (53.85%), Postives = 31/39 (79.49%), Query Frame = 2
Query:  554 RNIKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAK 667
            +N KT+A+CLADE+I A+K     S+A++KK+E ERVA+
Sbjct:  147 KNKKTVAQCLADEIIFASKADMQKSFAVRKKEEKERVAQ 185          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_METM7 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps7p PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.107e-36
Identity = 70/148 (47.30%), Postives = 92/148 (62.16%), Query Frame = 1
Query:  106 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESA 549
            ++KLF +W  E V V D SL  Y+ V        VPHTAGR S K F K++  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA +SA
Sbjct:    2 EIKLFGKWDSETVTVKDPSLKSYVSVAPV----LVPHTAGRNSKKSFDKSKMNIVERLANKLMANQENTGKKHETLAIVEEALTIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASQSA 145          

HSP 2 Score: 43.8986 bits (102), Expect = 4.107e-36
Identity = 21/39 (53.85%), Postives = 31/39 (79.49%), Query Frame = 2
Query:  554 RNIKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAK 667
            +N KT+A+CLADE+I A+K     S+A++KK+E ERVA+
Sbjct:  147 KNKKTVAQCLADEIIFASKADMQKSFAVRKKEEKERVAQ 185          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_METM6 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps7p PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.107e-36
Identity = 70/148 (47.30%), Postives = 92/148 (62.16%), Query Frame = 1
Query:  106 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESA 549
            ++KLF +W  E V V D SL  Y+ V        VPHTAGR S K F K++  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA +SA
Sbjct:    2 EIKLFGKWDSETVTVKDPSLKSYVSVTPV----LVPHTAGRNSKKSFDKSKMNIVERLANKLMANQNNTGKKHETLAIVEEALTIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASQSA 145          

HSP 2 Score: 43.8986 bits (102), Expect = 4.107e-36
Identity = 21/39 (53.85%), Postives = 31/39 (79.49%), Query Frame = 2
Query:  554 RNIKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAK 667
            +N KT+A+CLADE+I A+K     S+A++KK+E ERVA+
Sbjct:  147 KNKKTVAQCLADEIIFASKADMQKSFAVRKKEEKERVAQ 185          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_ARCFU (30S ribosomal protein S7P OS=Archaeoglobus fulgidus GN=rps7p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.539e-35
Identity = 65/149 (43.62%), Postives = 94/149 (63.09%), Query Frame = 1
Query:  106 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            ++ +F ++   +VQ++D +L  YI ++      YVPH  GR++   F K +  IVERL N +M  G N GKK++A  IVK A EII   T +NPIQV+VDA+IN+GPRE+  R+   G+   +AVD S  RRV+ A+  +  GAR +AF
Sbjct:    9 ELLVFGKYDPSEVQISDPALESYICLEPK----YVPHNHGRHANVPFAKQKVFIVERLINKVMRKGHNTGKKILAYNIVKEAFEIIEKKTKKNPIQVLVDAIINAGPREEVVRLKYGGIAVPKAVDTSSSRRVDIALRNIAEGARRAAF 153          

HSP 2 Score: 50.447 bits (119), Expect = 1.539e-35
Identity = 22/39 (56.41%), Postives = 32/39 (82.05%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            F++ ++IA+CLADE+I AA   S S+A+ KK+E+ERVAK
Sbjct:  153 FKSKRSIAQCLADEIIAAANNESRSFAVAKKEEVERVAK 191          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_METST (30S ribosomal protein S7P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps7p PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.405e-35
Identity = 67/147 (45.58%), Postives = 96/147 (65.31%), Query Frame = 1
Query:  112 KLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            KLF++W   +V V D+ L +Y+ +        VPHT GR+  ++F K++  IVERL N +M   RN+GKK  A  IV+ A+EII+  T QNP+QV+V AV N+ PRE+ TRI   G+  + AVDI+P RRV+ ++  +T GA +SAF
Sbjct:    4 KLFDKWDVTEVTVEDMGLQNYVCLDEI----VVPHTMGRHVKRQFAKSKVSIVERLMNKIMRTERNSGKKNKAYSIVEDALEIINNKTKQNPVQVLVKAVENTAPREETTRIKYGGIGYQIAVDIAPQRRVDLSLGFITKGAMQSAF 146          

HSP 2 Score: 45.4394 bits (106), Expect = 3.405e-35
Identity = 20/39 (51.28%), Postives = 31/39 (79.49%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            F+N K+ A+CLADE++ A+   S S+A++KK+E ERVA+
Sbjct:  146 FKNKKSAAQCLADEILLASDEDSRSFAVQKKEEKERVAR 184          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_METTH (30S ribosomal protein S7P OS=Methanobacterium thermoautotrophicum GN=rps7p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.528e-35
Identity = 64/146 (43.84%), Postives = 98/146 (67.12%), Query Frame = 1
Query:  115 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            +F++W  ++V+V D+ L+ YI + +      VPHT GR+  ++F K++  IVERL N +M   RN+GKK  A +IV+ A EII+  T +NP+Q++V AV N+ PRE+ TRI   G+  + AVDISP RRV+ ++  +T GA ++AF
Sbjct:    4 VFDKWELDEVKVEDMGLAKYICLDSI----LVPHTMGRHVKRQFAKSKVSIVERLINKVMRTERNSGKKNKAYKIVQEAFEIINRRTKENPVQILVKAVENTSPREETTRIKYGGIGYQVAVDISPQRRVDLSLGFITRGAMQAAF 145          

HSP 2 Score: 44.669 bits (104), Expect = 7.528e-35
Identity = 20/39 (51.28%), Postives = 32/39 (82.05%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            F+N K+I ECLA+E++ AA+  + S+AI+KK+E ER+A+
Sbjct:  145 FKNKKSIEECLANEIMLAAEYDTRSFAIQKKEEKERIAR 183          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_CALMQ (30S ribosomal protein S7P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps7p PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.272e-34
Identity = 62/149 (41.61%), Postives = 92/149 (61.74%), Query Frame = 1
Query:  109 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFS 555
            + LF +W   DV + D  L  Y+ ++       +PHT G+Y  ++F KA  PI+ER+ N LM  GRN GKK  A +I+K A +II++ T +NP+QV VDAV+N  PRE+ TR+   G+    +VD+ P RR++ AI  +  GAR  +F+
Sbjct:   40 ILLFGKWNVNDVVIRDPGLRRYMCLKPM----LLPHTEGKYQNRKFGKAMIPIIERMMNQLMKPGRNAGKKQKAYKILKTAFDIIYVATGKNPVQVFVDAVVNVAPREEITRVIYGGIAYPVSVDVGPTRRLDLAIRWIAEGARACSFN 184          

HSP 2 Score: 44.2838 bits (103), Expect = 1.272e-34
Identity = 20/38 (52.63%), Postives = 28/38 (73.68%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVA 664
            F N + I ECLA+E+I AA     SYA++++DE+ERVA
Sbjct:  183 FNNPRPIEECLANEIIAAANNDPASYALRRRDEMERVA 220          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_KORCO (30S ribosomal protein S7P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps7p PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.161e-34
Identity = 72/166 (43.37%), Postives = 99/166 (59.64%), Query Frame = 1
Query:   91 SQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLM------------MHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            S P   +KLF RW+++D+++ + +L + I ++      Y+PHT GR+  K+F K + PIVERL N LM            ++ +N GKKL A+R VK+A EII L T +NPIQV +DA+ NS  RE+ TRI   GV    AVD SP R V+ AI  +  GA   AF
Sbjct:    5 SNPETQIKLFGRWSYDDLRIENAALKNVISLKPV----YLPHTGGRHEHKKFGKLEIPIVERLVNRLMGQAMNSGSRKDHVNSKNQGKKLKAMRTVKYAFEIIELRTGKNPIQVFLDAIENSIIREEVTRIMYGGVSYFHAVDTSPSRMVDLAIRHIAQGAAMKAF 166          

HSP 2 Score: 40.4318 bits (93), Expect = 2.161e-34
Identity = 20/39 (51.28%), Postives = 32/39 (82.05%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSN-SYAIKKKDEIERVA 664
            FR+ +++AE LA+E+I AA+   N S+AI++K+EIER+A
Sbjct:  166 FRSPRSLAEALAEEIIAAAEYDRNRSFAIRRKEEIERIA 204          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_META3 (30S ribosomal protein S7P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps7p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.787e-34
Identity = 64/148 (43.24%), Postives = 96/148 (64.86%), Query Frame = 1
Query:  106 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESA 549
            ++KLFN+W   ++ V D SL  YI ++      +VPHT+GR S + F KA+  IVERL N+LM   +N G+K + + IV+ A EII   T++NP++V+V+A+ N GPRE+ TRI   G+   Q+VD+SP RR++ A+  +  G   SA
Sbjct:    2 EIKLFNKWDTTEIVVKDPSLRHYINLEPI----FVPHTSGRNSGRMFEKAKMNIVERLVNNLMRAEQNTGQKQVTLSIVEEAFEIIEKRTNENPVKVLVEALENGGPREETTRISYGGIAFLQSVDVSPSRRLDTALRNIAIGTLNSA 145          

HSP 2 Score: 40.817 bits (94), Expect = 4.787e-34
Identity = 20/44 (45.45%), Postives = 32/44 (72.73%), Query Frame = 2
Query:  539 VNLLFRNIKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAK 667
            +N   +N K+ A+CLADE++ A+K     S+A++KK+E ERVA+
Sbjct:  142 LNSAHKNKKSAAQCLADEIMFASKADMQRSFAVRKKEEKERVAQ 185          
The following BLAST results are available for this feature:
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_METMP3.801e-3748.6530S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METM53.153e-3647.9730S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METM74.107e-3647.3030S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METM64.107e-3647.3030S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_ARCFU1.539e-3543.6230S ribosomal protein S7P OS=Archaeoglobus fulgidu... [more]
RS7_METST3.405e-3545.5830S ribosomal protein S7P OS=Methanosphaera stadtm... [more]
RS7_METTH7.528e-3543.8430S ribosomal protein S7P OS=Methanobacterium ther... [more]
RS7_CALMQ1.272e-3441.6130S ribosomal protein S7P OS=Caldivirga maquilinge... [more]
RS7_KORCO2.161e-3443.3730S ribosomal protein S7P OS=Korarchaeum cryptofil... [more]
RS7_META34.787e-3443.2430S ribosomal protein S7P OS=Methanococcus aeolicu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00361 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00361 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623270 ID=BQ623270; Name=BQ623270; organism=Citrus sinensis; type=EST; length=667bp
CTTATTATTTTATCTCTCTCGCTCTCTCACTCTCTCAAAGCTCTTCAGGT
AAGAATGGCGACTGCTGTAGTGGCACAATCTCAAGACCCATCACAGCCTC
ACTACGATGTGAAGCTCTTCAATAGGTGGACTTTCGAGGATGTTCAGGTC
AATGACATCTCGTTGAGTGATTATATTGGCGTGCAAGCGGCCAAGCACGC
TACTTATGTGCCTCACACTGCTGGGAGGTACTCAGTTAAGCGTTTCCGGA
AGGCCCAATGTCCCATTGTTGAGAGGCTTACGAACTCTCTTATGATGCAC
GGTCGTAACAACGGCAAGAAATTGATGGCTGTCAGGATTGTTAAGCATGC
CATGGAGATCATTCACCTTTTGACCGACCAGAACCCAATTCAAGTCATTG
TTGATGCTGTCATCAACAGTGGTCCAAGGGAAGATGCTACCCGTATTGGA
TCTGCTGGTGTTGTTAGGCGTCAGGCTGTGGATATTTCCCCATTGCGCCG
TGTGAATCAAGCGATCTATCTACTCACCACTGGTGCTCGTGAATCTGCTT
TTTCGTAACATCAAGACTATTGCCGAATGCTTGGCCGATGAACTCATTAA
TGCTGCCAAGGGGTCATCTAACAGCTATGCGATCAAGAAGAAGGATGAGA
TTGAGAGAGTGGCAAAG
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