BQ623270

Overview
NameBQ623270
Unique NameBQ623270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13374 contig Csv1_Contig13374:834..1499. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_METTP (30S ribosomal protein S7P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps7p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.966e-33
Identity = 57/148 (38.51%), Postives = 97/148 (65.54%), Query Frame = 1
Query:  109 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            +K+F +W   +V++ D+S+  YI ++       V HT GR++ ++F+K++  +VERL N +M   +N G+K +A RIV+ A +IIH  T +NP+ V+V A+ N+GPRE+  R+   G+   +AVD +P RRV+ A+ L+  GA +++F
Sbjct:    1 MKVFGKWDASEVEIPDLSVKGYINLKPR----IVLHTGGRHAKQQFKKSELHVVERLINKMMRKEKNTGQKQIAYRIVEEAFDIIHSRTKENPLSVLVRAISNAGPREEVVRLKYGGITVPKAVDTAPQRRVDTALMLIAKGAWQASF 144          

HSP 2 Score: 43.5134 bits (101), Expect = 3.966e-33
Identity = 20/39 (51.28%), Postives = 28/39 (71.79%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            F++ ++I  CLADE+I AA     S+A+ +KD IERVAK
Sbjct:  144 FKSRRSIQNCLADEIIAAANYDVKSFAVSRKDSIERVAK 182          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_METBF (30S ribosomal protein S7P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps7p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.966e-33
Identity = 57/148 (38.51%), Postives = 93/148 (62.84%), Query Frame = 1
Query:  109 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            +K+F +W   +V+V D+ +  Y+ +        VPH++G+++ ++F K++  IVERL N+LM    N GKK   +R V+ A +I+   T QNPIQV+VDA+ N+GPRE+  R+   G+   +AVD +P RRV+ A+  ++ G   +AF
Sbjct:    1 MKIFGKWDPTEVEVRDLGIKRYVSLTPV----IVPHSSGKHARQQFNKSEISIVERLANNLMRTEINTGKKQKTLRAVEEAFDIVSKKTKQNPIQVLVDAIANAGPREEVVRLKYGGISVPKAVDTAPQRRVDTALRYISMGTNNAAF 144          

HSP 2 Score: 46.2098 bits (108), Expect = 3.966e-33
Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 2
Query:  542 NLLFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            N  F++ +++AECLA ELI AA   + S+AI +KD  ERVAK
Sbjct:  141 NAAFKSKRSVAECLATELIGAANRDTKSFAINRKDAKERVAK 182          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_HALSA (30S ribosomal protein S7P OS=Halobacterium salinarium GN=rps7p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.707e-33
Identity = 69/160 (43.12%), Postives = 99/160 (61.88%), Query Frame = 1
Query:   73 AQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            A+S+D  +   + KLF +W   ++   D S   Y+ V      T V HT GR++ K+F+K++  IVERL N LM  G N GKK  A++IV+ A +I+H  TD+NPIQV+V AV N+ PRE+  R+   G+   QAVD +P RRV+QA+  L  GA  ++F
Sbjct:   16 AESEDTQEVAANAKLFGKWDVAEIHYEDPSTRRYLAV------TPVAHTMGRHAQKQFKKSEISIVERLANRLMKTGANAGKKQQALKIVRDAFDIVHERTDENPIQVLVSAVENAAPREETVRLKYGGISVPQAVDTAPQRRVDQALKFLADGAHSASF 169          

HSP 2 Score: 30.4166 bits (67), Expect = 6.707e-33
Identity = 17/38 (44.74%), Postives = 23/38 (60.53%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVA 664
            F+     AE LA++L  AA  +  +YAI +K E ERVA
Sbjct:  169 FKTPTDAAEALANQLAGAADYNVQTYAIGQKKEKERVA 206          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_HALMA (30S ribosomal protein S7P OS=Haloarcula marismortui GN=rps7p PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.710e-33
Identity = 69/165 (41.82%), Postives = 95/165 (57.58%), Query Frame = 1
Query:   58 ATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            A A  A+  +P       KLF  W   D++ +D S   YI V      T + HT GR++ K+F+K++  IVERL N LM    N GKK +A  IV  A E++H  TD+NPIQV+V AV NS PRE+  R+   G+   +AVD++P RRV+QA+  L  G    +F
Sbjct:    9 ADADAAEESEPETAR--AKLFGEWDITDIEYSDPSTERYITV------TPIAHTMGRHADKQFKKSEISIVERLINRLMQTDENTGKKQLATSIVTEAFELVHERTDENPIQVLVSAVENSAPREETVRLKYGGISVPKAVDVAPQRRVDQALKFLAEGVYGGSF 165          

HSP 2 Score: 37.3502 bits (85), Expect = 6.710e-33
Identity = 18/38 (47.37%), Postives = 24/38 (63.16%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVA 664
            F+   T AE LA +LI AA     +YA+ +K+E ERVA
Sbjct:  165 FKTTTTAAEALAQQLIGAANDDVQTYAVNQKEEKERVA 202          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_METMA (30S ribosomal protein S7P OS=Methanosarcina mazei GN=rps7p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.725e-33
Identity = 57/147 (38.78%), Postives = 94/147 (63.95%), Query Frame = 1
Query:  112 KLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            K+F +W   +V+V D+ +  Y+ +        VPH++G+++ ++F K++  IVERL N+LM    N GKK + +R V+ A +II+  T QNPIQ++VDA+ N+GPRE+  R+   G+   +AVD +P RRV+ A+  ++ G   +AF
Sbjct:    6 KIFGKWDPTEVEVRDLGIKRYVSLAPV----IVPHSSGKHARQQFNKSEISIVERLANNLMRTETNTGKKQVTLRAVEEAFDIINRKTQQNPIQILVDAIANAGPREEVVRLKYGGISVPKAVDTAPQRRVDTALRYISMGTNAAAF 148          

HSP 2 Score: 43.5134 bits (101), Expect = 6.725e-33
Identity = 20/39 (51.28%), Postives = 29/39 (74.36%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            F++ +++AECLA ELI AA   + S++I +KD  ERVAK
Sbjct:  148 FKSKRSVAECLATELIGAANRDTKSFSINRKDAKERVAK 186          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_METAC (30S ribosomal protein S7P OS=Methanosarcina acetivorans GN=rps7p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.758e-33
Identity = 57/147 (38.78%), Postives = 94/147 (63.95%), Query Frame = 1
Query:  112 KLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            K+F +W   +V+V D+ +  Y+ +        VPH++G+++ ++F K++  IVERL N+LM    N GKK + +R V+ A +I++  T QNPIQV+VDA+ N+GPRE+  R+   G+   +AVD +P RRV+ A+  ++ G   +AF
Sbjct:    6 KIFGKWDPTEVEVKDLGIKRYVSLTPV----IVPHSSGKHARQQFNKSEISIVERLANNLMRTETNTGKKQVTLRAVEEAFDIVNKKTKQNPIQVLVDAIANAGPREEVVRLKYGGISVPKAVDTAPQRRVDTALRYISMGTNAAAF 148          

HSP 2 Score: 43.5134 bits (101), Expect = 8.758e-33
Identity = 20/39 (51.28%), Postives = 29/39 (74.36%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            F++ +++AECLA ELI AA   + S++I +KD  ERVAK
Sbjct:  148 FKSKRSVAECLATELIGAANRDTKSFSINRKDAKERVAK 186          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_METBU (30S ribosomal protein S7P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps7p PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 3.283e-32
Identity = 58/147 (39.46%), Postives = 97/147 (65.99%), Query Frame = 1
Query:  112 KLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            KLF +W   +V+V D  +  Y+ +        VPHT+G+++ ++F K+   IVERL N++M + +N GKK +A+RIV  A +I++  T +NP+QV+V+AV N+GPRE+  R+   G+   +AVD +P RRV+ A+  ++ G+ ++AF
Sbjct:    3 KLFGKWDLTEVEVADAGIKRYVNLDPV----IVPHTSGKHARQQFNKSDITIVERLVNNVMRNAQNTGKKQIALRIVDEAFDIVNSKTKKNPVQVLVEAVSNAGPREEVVRLKYGGISVPKAVDTAPQRRVDHALRNISIGSNQTAF 145          

HSP 2 Score: 38.1206 bits (87), Expect = 3.283e-32
Identity = 18/39 (46.15%), Postives = 27/39 (69.23%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            F++ ++ AECLA ELI A+   +  ++I +KD  ERVAK
Sbjct:  145 FKSKRSAAECLASELIAASNRDAKCFSINRKDGKERVAK 183          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_METHJ (30S ribosomal protein S7P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps7p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.270e-32
Identity = 61/140 (43.57%), Postives = 89/140 (63.57%), Query Frame = 1
Query:  115 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTG 534
            LFNRW   +V + D  ++ Y+ +    ++  VPH+ GR + + F KA   IVERL N LM    N GKK +A+RIV+ A EI+H  T +NPI+V+ DAV N+GPRE+  R+   G+   ++VD +P+RRVN A+ L+  G
Sbjct:   12 LFNRWDTSEVTIRDPGIARYVNL----NSMMVPHSCGRLTRQEFHKANMLIVERLINQLMRTEVNTGKKQLAIRIVRDAFEIVHQKTKKNPIEVLCDAVANAGPREETVRLKYGGINVPKSVDTAPMRRVNTAVGLIAAG 147          

HSP 2 Score: 38.1206 bits (87), Expect = 4.270e-32
Identity = 18/35 (51.43%), Postives = 24/35 (68.57%), Query Frame = 2
Query:  563 KTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            K +A  LA+ELI AA G    Y++ K++E ERVAK
Sbjct:  157 KPVANALAEELIAAANGDVKCYSVAKREERERVAK 191          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_METB6 (30S ribosomal protein S7P OS=Methanoregula boonei (strain 6A8) GN=rps7p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.710e-31
Identity = 63/161 (39.13%), Postives = 96/161 (59.63%), Query Frame = 1
Query:   67 VVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESA 549
            V AQ +  + P     LFN+W   +V+V D SL  Y+ +        +PH+ G++S + F KA   IVERL N LM    N GKK +A+ IV+ A E+I+  T +NPI+V+V+A+ N+GPRE+  R+   G+   ++VD +PLRRV+ AI  +     +S+
Sbjct:    6 VKAQPEGDAAPQSKALLFNKWDVSEVKVTDPSLVRYVNLTPQ----IIPHSCGKFSRQEFNKANMMIVERLINRLMQTENNTGKKQLAIGIVRDAFELINKKTKRNPIEVLVEAIGNTGPREETVRLKYGGINVPKSVDTAPLRRVDSAIGFIAEAVWKSS 162          

HSP 2 Score: 38.5058 bits (88), Expect = 2.710e-31
Identity = 18/35 (51.43%), Postives = 25/35 (71.43%), Query Frame = 2
Query:  563 KTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            K  +  LADELI A+KG +  Y++ KK+E ER+AK
Sbjct:  167 KPASAILADELIAASKGDAKCYSVGKKEEKERIAK 201          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_THEVO (30S ribosomal protein S7P OS=Thermoplasma volcanium GN=rps7p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.716e-31
Identity = 57/146 (39.04%), Postives = 90/146 (61.64%), Query Frame = 1
Query:  115 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            LF+++    V+V+D  +  YI V++A +     HT GR+S     K    +VERL N LM   +  GKK  A +I K A +II   T QNP+Q++++A+ N+GPRE+ TR+   G+   ++VD+SP RRV++A+  + TGA  ++F
Sbjct:    2 LFDKYDVNSVEVHDPGMVKYINVKSALNL----HTGGRFSSYYAGKINMNVVERLINKLMRTEKWTGKKYSAYKITKDAFDIIADKTKQNPLQILINAIENAGPREEVTRLKYGGIAVPKSVDVSPSRRVDEALRNIATGATNASF 143          

HSP 2 Score: 49.6766 bits (117), Expect = 2.716e-31
Identity = 23/42 (54.76%), Postives = 33/42 (78.57%), Query Frame = 2
Query:  542 NLLFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            N  F++ K+I  CLADE++ AAK  ++S+AI KK+EIERVA+
Sbjct:  140 NASFKSKKSIVNCLADEIMLAAKNDASSFAISKKEEIERVAQ 181          
The following BLAST results are available for this feature:
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_METTP3.966e-3338.5130S ribosomal protein S7P OS=Methanosaeta thermoph... [more]
RS7_METBF3.966e-3338.5130S ribosomal protein S7P OS=Methanosarcina barker... [more]
RS7_HALSA6.707e-3343.1330S ribosomal protein S7P OS=Halobacterium salinar... [more]
RS7_HALMA6.710e-3341.8230S ribosomal protein S7P OS=Haloarcula marismortu... [more]
RS7_METMA6.725e-3338.7830S ribosomal protein S7P OS=Methanosarcina mazei ... [more]
RS7_METAC8.758e-3338.7830S ribosomal protein S7P OS=Methanosarcina acetiv... [more]
RS7_METBU3.283e-3239.4630S ribosomal protein S7P OS=Methanococcoides burt... [more]
RS7_METHJ4.270e-3243.5730S ribosomal protein S7P OS=Methanospirillum hung... [more]
RS7_METB62.710e-3139.1330S ribosomal protein S7P OS=Methanoregula boonei ... [more]
RS7_THEVO2.716e-3139.0430S ribosomal protein S7P OS=Thermoplasma volcaniu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00361 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00361 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623270 ID=BQ623270; Name=BQ623270; organism=Citrus sinensis; type=EST; length=667bp
CTTATTATTTTATCTCTCTCGCTCTCTCACTCTCTCAAAGCTCTTCAGGT
AAGAATGGCGACTGCTGTAGTGGCACAATCTCAAGACCCATCACAGCCTC
ACTACGATGTGAAGCTCTTCAATAGGTGGACTTTCGAGGATGTTCAGGTC
AATGACATCTCGTTGAGTGATTATATTGGCGTGCAAGCGGCCAAGCACGC
TACTTATGTGCCTCACACTGCTGGGAGGTACTCAGTTAAGCGTTTCCGGA
AGGCCCAATGTCCCATTGTTGAGAGGCTTACGAACTCTCTTATGATGCAC
GGTCGTAACAACGGCAAGAAATTGATGGCTGTCAGGATTGTTAAGCATGC
CATGGAGATCATTCACCTTTTGACCGACCAGAACCCAATTCAAGTCATTG
TTGATGCTGTCATCAACAGTGGTCCAAGGGAAGATGCTACCCGTATTGGA
TCTGCTGGTGTTGTTAGGCGTCAGGCTGTGGATATTTCCCCATTGCGCCG
TGTGAATCAAGCGATCTATCTACTCACCACTGGTGCTCGTGAATCTGCTT
TTTCGTAACATCAAGACTATTGCCGAATGCTTGGCCGATGAACTCATTAA
TGCTGCCAAGGGGTCATCTAACAGCTATGCGATCAAGAAGAAGGATGAGA
TTGAGAGAGTGGCAAAG
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