BQ623270

Overview
NameBQ623270
Unique NameBQ623270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13374 contig Csv1_Contig13374:834..1499. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_THEAC (30S ribosomal protein S7P OS=Thermoplasma acidophilum GN=rps7p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.812e-31
Identity = 56/146 (38.36%), Postives = 90/146 (61.64%), Query Frame = 1
Query:  115 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            LFN++    V+++D  +  YI V++A +     HT GR+S     K    +VERL N LM   +  GKK  A +I + A +II   T QNP+Q++++A+ N+GPRE+ TR+   G+   ++VD+SP RRV++A+  + TGA  ++F
Sbjct:    2 LFNKYDVNAVEIHDPGMVKYINVKSALNL----HTGGRFSSYYAGKINMNVVERLINKLMRSEKWTGKKYSAYKITEEAFQIIAEKTKQNPLQILINAIENAGPREEVTRLKYGGIAVPKSVDVSPSRRVDEALRNIATGATNASF 143          

HSP 2 Score: 47.7506 bits (112), Expect = 7.812e-31
Identity = 22/42 (52.38%), Postives = 31/42 (73.81%), Query Frame = 2
Query:  542 NLLFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            N  F++ K+I  CLADE++ AA+    S+AI KK+EIERVA+
Sbjct:  140 NASFKSKKSIVNCLADEIMAAARNDPTSFAISKKEEIERVAQ 181          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_CENSY (30S ribosomal protein S7P OS=Cenarchaeum symbiosum GN=rps7p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.322e-30
Identity = 68/155 (43.87%), Postives = 92/155 (59.35%), Query Frame = 1
Query:  115 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMH---------GRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            LF +W   D++V D  L   I ++       +P+T GR ++KRF KA   IVERL N  MMH         GR  GKK+ ++  VK A EII+L T +NP++V+V AV NS P ED TRI   G V   +VD+SPLRRV+ A+  +  G +E+AF
Sbjct:    9 LFRKWDLSDIEVVDPGLKTAISLRKMT----LPYTYGRSALKRFNKADANIVERLANK-MMHFGKKYAKNTGRMAGKKMGSINTVKTAFEIINLKTGRNPVEVLVRAVENSAPNEDTTRIVYGGTVYHVSVDVSPLRRVDLALRFIADGVKEAAF 158          

HSP 2 Score: 38.1206 bits (87), Expect = 1.322e-30
Identity = 17/39 (43.59%), Postives = 30/39 (76.92%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            FR  K++ E LA+ LI AA  ++++ ++KKK+E+ER+A+
Sbjct:  158 FRKPKSLEEFLAEHLILAANNTTDAPSVKKKNELERIAQ 196          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_METLZ (30S ribosomal protein S7P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps7p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.953e-30
Identity = 56/136 (41.18%), Postives = 86/136 (63.24%), Query Frame = 1
Query:  109 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI 516
            + LFN+W   +V V D  +  Y+ + +    T VP + GR + ++F K++  IVERL N LM    N GKK+M  ++V  A ++I+  T QNP+QV+VDAV N+GPRE+  R+   G+   ++VD +P+RRVN A+
Sbjct:   10 ILLFNKWDMSEVVVKDAGMVRYVTITS----TEVPSSCGRLTQQQFTKSEMAIVERLINRLMQQEYNTGKKMMCTKMVMDAFDVINKKTKQNPLQVLVDAVANAGPREETVRLKYGGINVPKSVDSAPIRRVNTAL 141          

HSP 2 Score: 39.6614 bits (91), Expect = 4.953e-30
Identity = 17/29 (58.62%), Postives = 24/29 (82.76%), Query Frame = 2
Query:  581 LADELINAAKGSSNSYAIKKKDEIERVAK 667
            LADELI AAKG +  +++ KK+E+ER+AK
Sbjct:  163 LADELIMAAKGDAKCFSVGKKEEVERIAK 191          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_PYRFU (30S ribosomal protein S7P OS=Pyrococcus furiosus GN=rps7p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.420e-29
Identity = 66/168 (39.29%), Postives = 93/168 (55.36%), Query Frame = 1
Query:   97 PHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            PH ++K+  RW+ EDV+V D SL  YI ++       +PHT GR++ K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISP+RR++ A+  +  GA    +
Sbjct:   12 PH-EIKVMGRWSTEDVEVRDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEQRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCY 174          

HSP 2 Score: 39.2762 bits (90), Expect = 1.420e-29
Identity = 20/39 (51.28%), Postives = 26/39 (66.67%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            +RN  + AE LA+E+I AA     SYA  KK EIER+A+
Sbjct:  174 YRNKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAE 212          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_HALMO (30S ribosomal protein S7P OS=Halococcus morrhuae GN=rps7p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.139e-29
Identity = 65/165 (39.39%), Postives = 98/165 (59.39%), Query Frame = 1
Query:   73 AQSQDPSQPH-----YDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            +++ +P QP         KLF RW    ++ +D S   YI V      T V HT GR++ K+F+K++  IVERL N LM    N GKK  A RIV++A ++I   T+++P+QV+V AV N+ PRE+  R+   G+   QAVD++P RRV+QA+  +  G   ++F
Sbjct:    4 SEAPEPDQPAGAEEATGAKLFERWDVTGIEYDDPSTERYITV------TPVEHTMGRHAGKQFQKSEISIVERLINRLMQTDENTGKKQQATRIVRNAFDLIAERTEESPVQVLVSAVENAAPREETVRLKYGGISVPQAVDVAPQRRVDQALKFIAEGTHSASF 162          

HSP 2 Score: 30.4166 bits (67), Expect = 3.139e-29
Identity = 15/38 (39.47%), Postives = 23/38 (60.53%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVA 664
            F++     E LA++L  AA     +YA+ +K+E ERVA
Sbjct:  162 FKSPTDAHEALAEQLTGAANYDVQTYAVNQKEEKERVA 199          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_PYRHO (30S ribosomal protein S7P OS=Pyrococcus horikoshii GN=rps7p PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.312e-29
Identity = 67/168 (39.88%), Postives = 93/168 (55.36%), Query Frame = 1
Query:   97 PHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            PH ++K+  RW+ EDV+V D SL  YI ++       +PHT GR++ K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISPLRR++ A+  +  GA    +
Sbjct:   15 PH-EIKVMGRWSTEDVEVKDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCY 177          

HSP 2 Score: 36.965 bits (84), Expect = 5.312e-29
Identity = 19/39 (48.72%), Postives = 25/39 (64.10%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            +R   + AE LA+E+I AA     SYA  KK EIER+A+
Sbjct:  177 YRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAE 215          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_PYRAB (30S ribosomal protein S7P OS=Pyrococcus abyssi GN=rps7p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.919e-29
Identity = 66/168 (39.29%), Postives = 93/168 (55.36%), Query Frame = 1
Query:   97 PHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            PH ++K+  RW+ EDV+V D SL  YI ++       +PHT GR++ K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISP+RR++ A+  +  GA    +
Sbjct:   12 PH-EIKVMGRWSTEDVEVRDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCY 174          

HSP 2 Score: 36.965 bits (84), Expect = 6.919e-29
Identity = 19/39 (48.72%), Postives = 25/39 (64.10%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            +R   + AE LA+E+I AA     SYA  KK EIER+A+
Sbjct:  174 YRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAE 212          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_PICTO (30S ribosomal protein S7P OS=Picrophilus torridus GN=rps7p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.040e-29
Identity = 53/149 (35.57%), Postives = 87/149 (58.39%), Query Frame = 1
Query:  106 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            D  +  ++    +Q++D+ L+ YI +    ++ +  HT GRYS     K     +ERL N LM   +  GKK  A R++K A EI+   T QNP+QV+++A+ NS PRE+ TR+   G+   ++VD+SP RR+++A+  +  GA   +F
Sbjct:    2 DRLIMGKYDVSGIQIHDMGLAKYINL----NSYFNLHTGGRYSNYSAGKRNVNTIERLLNKLMRTEKWTGKKYSAYRVLKEAFEIVEQKTKQNPVQVLINAIENSAPREEVTRLKYGGIAVPKSVDVSPSRRLDEALRNICIGATSKSF 146          

HSP 2 Score: 45.8246 bits (107), Expect = 9.040e-29
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVA 664
            F++   I ECLA+E+I A++   NSYA+ KK+EIERVA
Sbjct:  146 FKSKVPIEECLANEIILASRNDGNSYAVSKKEEIERVA 183          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_NATPD (30S ribosomal protein S7P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps7p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.529e-28
Identity = 60/147 (40.82%), Postives = 89/147 (60.54%), Query Frame = 1
Query:  112 KLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            +LF  W   +++ +D S   YI V      T + HT GR+S K+F+K++  IVERL N LM    N GKK  A +IV+ A +I+   TD+NP+QV+V AV N+GPRE+  R+   G+   +AVD++P RRV+ A+  +  G    +F
Sbjct:   22 QLFGEWEIGEIEYDDPSTRRYITV------TPIAHTMGRHSEKQFKKSEISIVERLINRLMQTDENTGKKQQATKIVREAFDIVAERTDENPVQVLVTAVENAGPREETVRLKYGGISVPKAVDVAPQRRVDLALKFIAEGTYNDSF 162          

HSP 2 Score: 31.5722 bits (70), Expect = 1.529e-28
Identity = 15/38 (39.47%), Postives = 22/38 (57.89%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVA 664
            F+    + E LA +LI AA     +Y + +K+E ERVA
Sbjct:  162 FKTTTPVEEALAHQLIGAANYDLQAYPVSQKEEQERVA 199          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS7_NANEQ (30S ribosomal protein S7P OS=Nanoarchaeum equitans GN=rps7p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.703e-28
Identity = 63/154 (40.91%), Postives = 83/154 (53.90%), Query Frame = 1
Query:  109 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGR-----------NNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGA 537
            +KLF RW +EDV V D  L DYI ++       +P++ GR+   RF KA+ PI+ERL   LM  G              GKK  A +I+    EII   T QNP++V V A+ N+ PRE+ T I   G    +AVD SP RRV+ AI  +  GA
Sbjct:    3 MKLFGRWDYEDVTVEDPGLRDYINLKPM----LIPYSGGRHQKHRFGKAKIPIIERLAGRLMTSGHLGKKHKWTSEHQTGKKYNAYKIIIRTFEIIEKRTKQNPLKVFVKAIENAAPREETTTIEYGGARYPKAVDCSPQRRVDLAIRHMVWGA 152          

HSP 2 Score: 38.5058 bits (88), Expect = 9.703e-28
Identity = 19/34 (55.88%), Postives = 25/34 (73.53%), Query Frame = 2
Query:  566 TIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            +I E LA+E+INA   S  SYAIK+K EIE+ A+
Sbjct:  162 SIEEALAEEIINAYNNSLKSYAIKRKLEIEKTAE 195          
The following BLAST results are available for this feature:
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_THEAC7.812e-3138.3630S ribosomal protein S7P OS=Thermoplasma acidophi... [more]
RS7_CENSY1.322e-3043.8730S ribosomal protein S7P OS=Cenarchaeum symbiosum... [more]
RS7_METLZ4.953e-3041.1830S ribosomal protein S7P OS=Methanocorpusculum la... [more]
RS7_PYRFU1.420e-2939.2930S ribosomal protein S7P OS=Pyrococcus furiosus G... [more]
RS7_HALMO3.139e-2939.3930S ribosomal protein S7P OS=Halococcus morrhuae G... [more]
RS7_PYRHO5.312e-2939.8830S ribosomal protein S7P OS=Pyrococcus horikoshii... [more]
RS7_PYRAB6.919e-2939.2930S ribosomal protein S7P OS=Pyrococcus abyssi GN=... [more]
RS7_PICTO9.040e-2935.5730S ribosomal protein S7P OS=Picrophilus torridus ... [more]
RS7_NATPD1.529e-2840.8230S ribosomal protein S7P OS=Natronomonas pharaoni... [more]
RS7_NANEQ9.703e-2840.9130S ribosomal protein S7P OS=Nanoarchaeum equitans... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00361 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00361 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623270 ID=BQ623270; Name=BQ623270; organism=Citrus sinensis; type=EST; length=667bp
CTTATTATTTTATCTCTCTCGCTCTCTCACTCTCTCAAAGCTCTTCAGGT
AAGAATGGCGACTGCTGTAGTGGCACAATCTCAAGACCCATCACAGCCTC
ACTACGATGTGAAGCTCTTCAATAGGTGGACTTTCGAGGATGTTCAGGTC
AATGACATCTCGTTGAGTGATTATATTGGCGTGCAAGCGGCCAAGCACGC
TACTTATGTGCCTCACACTGCTGGGAGGTACTCAGTTAAGCGTTTCCGGA
AGGCCCAATGTCCCATTGTTGAGAGGCTTACGAACTCTCTTATGATGCAC
GGTCGTAACAACGGCAAGAAATTGATGGCTGTCAGGATTGTTAAGCATGC
CATGGAGATCATTCACCTTTTGACCGACCAGAACCCAATTCAAGTCATTG
TTGATGCTGTCATCAACAGTGGTCCAAGGGAAGATGCTACCCGTATTGGA
TCTGCTGGTGTTGTTAGGCGTCAGGCTGTGGATATTTCCCCATTGCGCCG
TGTGAATCAAGCGATCTATCTACTCACCACTGGTGCTCGTGAATCTGCTT
TTTCGTAACATCAAGACTATTGCCGAATGCTTGGCCGATGAACTCATTAA
TGCTGCCAAGGGGTCATCTAACAGCTATGCGATCAAGAAGAAGGATGAGA
TTGAGAGAGTGGCAAAG
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