BQ623274

Overview
NameBQ623274
Unique NameBQ623274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623274_ssr414 microsatellite BQ623274_ssr414:414..427. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2046 contig Csv1_Contig2046:142..631. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Match: GRS10_ORYSJ (Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. japonica GN=GRXS10 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.627e-17
Identity = 42/81 (51.85%), Postives = 56/81 (69.14%), Query Frame = 2
Query:    2 NPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELD-IESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 241
            NPVV++SK++C Y   VK L K++G    V+ELD + + G ++Q  L   TGQ TVPNVFIGGKHIGGC   V+ H+ G+L
Sbjct:   70 NPVVIYSKSWCSYSMEVKALFKRIGVQPHVIELDQLGAQGPQLQKVLERLTGQSTVPNVFIGGKHIGGCTDTVKLHRKGEL 150          
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Match: TRXR3_HUMAN (Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 2.774e-17
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 2
Query:    8 VVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 241
            VV+FSK+YC + TRVKEL   LG    V+ELD   DG+++Q  L+E T Q+TVPN+F+   H+GGCD   + +Q G L
Sbjct:  179 VVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLL 256          
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Match: GRXC5_ARATH (Glutaredoxin-C5, chloroplastic OS=Arabidopsis thaliana GN=GRXC5 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.072e-17
Identity = 43/81 (53.09%), Postives = 54/81 (66.67%), Query Frame = 2
Query:    2 NPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELD-IESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 241
            N VV++SKT+C YCT VK L K+LG    VVELD +   G ++Q  L   TGQ TVPNVF+ GKHIGGC   V+ ++ G L
Sbjct:   80 NTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDL 160          
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Match: GRXC8_ORYSJ (Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.798e-16
Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 2
Query:    8 VVVFSKTYCGYCTRVKELLKQLGTSFK--VVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 241
            VV+FSK+YC YC R K + K+L    +  VVELD   DG +IQ AL++  G+RTVP VF+ GKH+GG D  VE ++ GKL
Sbjct:   45 VVIFSKSYCPYCRRAKAVFKELELKKEPYVVELDQREDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAYESGKL 124          
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Match: GRXC4_ARATH (Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.349e-16
Identity = 39/78 (50.00%), Postives = 52/78 (66.67%), Query Frame = 2
Query:    8 VVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 241
            +V+FSK+YC YC + K + ++L     VVELD   DG  IQ AL E  G+RTVP VFI GKH+GG D  V+ ++ G+L
Sbjct:   44 IVIFSKSYCPYCKKAKSVFRELDQVPYVVELDEREDGWSIQTALGEIVGRRTVPQVFINGKHLGGSDDTVDAYESGEL 121          
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Match: GLRX2_BOVIN (Glutaredoxin-2, mitochondrial OS=Bos taurus GN=GLRX2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.068e-16
Identity = 40/82 (48.78%), Postives = 52/82 (63.41%), Query Frame = 2
Query:    2 NPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 247
            N VV+FSKT C YCT  K L   +  ++KVVELD+   GS+ Q AL + TG+RTVP +F+ G  IGG       H+ GKL+P
Sbjct:   61 NCVVIFSKTSCSYCTMAKNLFHDMNVNYKVVELDMLEYGSQFQDALHKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLP 142          
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Match: GLRX2_HUMAN (Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=GLRX2 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.006e-16
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 2
Query:    2 NPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 247
            N VV+FSKT C YCT  K+L   +  ++KVVELD+   G++ Q AL + TG+RTVP +F+ G  IGG       H+ GKL+P
Sbjct:   67 NCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLP 148          
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Match: GLRX2_PONAB (Glutaredoxin-2, mitochondrial OS=Pongo abelii GN=GLRX2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.232e-16
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 2
Query:    2 NPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 247
            N VV+FSKT C YCT  K+L + +  ++KVVELD+   G++ Q AL + TG RTVP +F+ G  IGG       H+ GKL+P
Sbjct:   64 NCVVIFSKTSCSYCTMAKKLFRDMNVNYKVVELDLLEYGNQFQDALYKMTGGRTVPRIFVNGTFIGGATDTHRLHKEGKLLP 145          
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Match: GRXC3_ARATH (Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.925e-16
Identity = 40/80 (50.00%), Postives = 51/80 (63.75%), Query Frame = 2
Query:    2 NPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 241
            N +V+FSK+YC YC R K +  QL     VVELD   DG +IQ  L E+ G+RTVP VF+ GKHIGG D +    + G+L
Sbjct:   44 NKIVIFSKSYCPYCLRSKRIFSQLKEEPFVVELDQREDGDQIQYELLEFVGRRTVPQVFVNGKHIGGSDDLGAALESGQL 123          
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Match: GLRX2_RAT (Glutaredoxin-2, mitochondrial OS=Rattus norvegicus GN=Glrx2 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 4.429e-15
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 2
Query:    2 NPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 247
            N VV+FSK+ C YC+  K++   +  ++KVVELD+   GS+ Q AL + TG+RTVP +F+ G  IGG       H+ GKL+P
Sbjct:   60 NCVVIFSKSSCSYCSMAKKIFHDMNVNYKVVELDMVEYGSQFQEALYKMTGERTVPRIFVNGIFIGGAADTHRLHKEGKLLP 141          
The following BLAST results are available for this feature:
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
GRS10_ORYSJ1.627e-1751.85Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. ... [more]
TRXR3_HUMAN2.774e-1750.00Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 ... [more]
GRXC5_ARATH8.072e-1753.09Glutaredoxin-C5, chloroplastic OS=Arabidopsis thal... [more]
GRXC8_ORYSJ1.798e-1652.50Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN... [more]
GRXC4_ARATH2.349e-1650.00Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 P... [more]
GLRX2_BOVIN3.068e-1648.78Glutaredoxin-2, mitochondrial OS=Bos taurus GN=GLR... [more]
GLRX2_HUMAN4.006e-1647.56Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=G... [more]
GLRX2_PONAB5.232e-1647.56Glutaredoxin-2, mitochondrial OS=Pongo abelii GN=G... [more]
GRXC3_ARATH8.925e-1650.00Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 P... [more]
GLRX2_RAT4.429e-1545.12Glutaredoxin-2, mitochondrial OS=Rattus norvegicus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00365 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00365 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623274 ID=BQ623274; Name=BQ623274; organism=Citrus sinensis; type=EST; length=489bp
CAATCCCGTCGTCGTCTTCAGCAAAACCTACTGTGGTTATTGTACAAGGG
TGAAGGAGTTGCTTAAACAGCTTGGAACGAGTTTCAAAGTCGTAGAATTG
GATATTGAAAGTGATGGAAGTAAAATTCAAGCAGCTCTGGCAGAGTGGAC
TGGGCAGAGAACCGTACCCAATGTGTTCATTGGGGGAAAACACATCGGTG
GCTGCGACACTGTAGTAGAGAAGCACCAAGGAGGAAAGCTGGTCCCCCTT
CTTCGTGATGCCGGTGCCCTCGCCCTTGCTGACAAATGATAATTTTGCTC
CGTTAAGATCAGAACCACAAGTTCGTGTACATGGGCTGAAGTGAAGAAAT
GCAACAATATTAAAGTGACCAATTATATGGTGTGTAAAAGTAACAATCGA
TGTCCACTTTATTTGTGTGTGTGTGTGGGGGGTTTATAGACATTTCTCTG
CTTGATTGGAAGGAAAATGAGAGATATGCATGCGTTGCT
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